Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 0.0e+00 1288.5 673 100.0
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 2.1e-251 872.5 691 69.8
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 4.7e-198 695.3 687 59.1
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 8.6e-192 674.5 684 56.7
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 1.5e-188 663.7 686 55.7
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 6.6e-184 648.3 688 54.8
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 1.1e-183 647.5 701 56.8
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 7.5e-180 634.8 688 54.2
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 1.6e-177 627.1 683 54.3
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 6.2e-174 615.1 694 53.7
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 1.1e-173 614.4 680 54.0
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 1.5e-172 610.5 680 54.3
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 2.6e-172 609.8 698 52.7
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 7.6e-172 608.2 711 51.8
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 1.1e-170 604.4 734 53.8
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 3.3e-167 592.8 707 50.4
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 1.3e-160 570.9 685 49.8
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 2.8e-158 563.1 714 49.0
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 3.6e-158 562.8 688 52.0
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 1.3e-155 554.3 711 49.1
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 4.9e-155 552.4 742 47.2
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 1.3e-150 537.7 715 48.8
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 5.3e-149 532.3 705 47.9
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 3.7e-142 509.6 706 46.2
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 1.5e-140 504.2 712 44.7
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 7.6e-140 501.9 710 46.8
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 1.9e-138 497.3 708 44.8
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 4.2e-138 496.1 714 46.6
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 1.2e-137 494.6 597 48.9
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 1.2e-137 494.6 702 46.2
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 6.0e-137 492.3 702 46.3
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.8e-136 490.7 705 46.0
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 5.1e-136 489.2 640 47.7
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 5.7e-135 485.7 698 46.8
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 1.3e-134 484.6 705 45.2
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 2.8e-134 483.4 702 47.0
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.4e-133 481.1 701 46.2
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.4e-133 481.1 700 46.4
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 2.4e-133 480.3 709 44.9
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 1.1e-130 471.5 702 44.2
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 1.9e-130 470.7 710 44.8
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.9e-130 470.7 705 46.1
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 3.5e-129 466.5 700 46.0
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 1.3e-128 464.5 704 44.5
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 1.8e-128 464.2 706 44.2
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 6.7e-128 462.2 704 43.5
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 1.1e-127 461.5 713 43.6
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.5e-127 461.1 716 44.4
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.9e-127 460.7 693 45.5
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 3.3e-127 459.9 726 43.9
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 5.7e-127 459.1 705 42.4
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 2.8e-126 456.8 694 43.7
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 1.1e-125 454.9 655 46.6
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 1.1e-125 454.9 665 45.3
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 7.7e-124 448.7 718 44.8
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.3e-123 448.0 667 44.1
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 2.9e-123 446.8 772 40.8
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 9.4e-122 441.8 662 44.4
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 3.6e-121 439.9 710 42.1
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 5.7e-119 432.6 698 43.6
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.7e-118 429.9 700 44.1
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 8.2e-118 428.7 704 43.6
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 1.8e-117 427.6 723 42.0
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 6.9e-117 425.6 710 41.0
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.2e-116 424.9 715 43.8
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.0e-115 421.8 631 45.3
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 1.7e-115 421.0 814 38.6
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 2.1e-113 414.1 696 41.2
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 3.6e-113 413.3 718 43.2
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 3.0e-112 410.2 703 43.2
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 8.8e-112 408.7 725 38.8
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.1e-111 408.3 705 40.4
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.3e-110 404.8 701 39.9
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 3.7e-110 403.3 704 42.3
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 9.1e-109 398.7 678 41.2
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.6e-108 397.9 713 40.5
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 1.6e-108 397.9 703 41.3
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 2.6e-108 397.1 698 39.0
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.7e-107 394.4 538 48.1
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 1.7e-107 394.4 725 37.9
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 2.2e-107 394.0 617 44.6
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 5.0e-107 392.9 703 40.0
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 6.5e-107 392.5 697 40.2
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 6.5e-107 392.5 725 37.9
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 1.1e-106 391.7 708 39.7
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 1.5e-106 391.3 647 41.7
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 4.2e-106 389.8 759 37.8
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 1.6e-105 387.9 737 38.0
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 2.1e-105 387.5 707 40.7
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 4.7e-105 386.3 806 35.6
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 5.2e-104 382.9 707 40.3
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 2.0e-100 370.9 684 39.2
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 2.2e-99 367.5 703 38.1
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 6.5e-99 365.9 714 38.7
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 1.5e-98 364.8 684 38.0
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 7.2e-98 362.5 715 39.3
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 9.4e-98 362.1 660 38.5
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 9.4e-98 362.1 696 39.8
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 1.6e-97 361.3 708 38.4
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 8.0e-97 359.0 705 38.6
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 1.4e-96 358.2 706 39.0
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 2.6e-95 354.0 660 38.5
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 9.8e-95 352.1 514 46.1
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 2.4e-93 347.4 699 38.1
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 4.1e-93 346.7 770 36.2
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 4.5e-92 343.2 773 35.7
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 5.9e-92 342.8 659 38.4
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 2.9e-91 340.5 666 38.4
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 2.9e-91 340.5 660 39.5
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 6.5e-91 339.3 660 37.0
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 4.2e-90 336.7 705 38.0
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 5.5e-90 336.3 633 37.8
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 1.0e-88 332.0 712 34.4
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 1.2e-87 328.6 662 37.5
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 3.4e-87 327.0 658 36.8
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 3.4e-87 327.0 768 33.9
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 9.8e-87 325.5 657 35.8
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 1.3e-86 325.1 661 37.2
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 6.3e-86 322.8 660 35.9
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 3.1e-85 320.5 665 37.0
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 4.1e-85 320.1 706 36.8
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 5.4e-85 319.7 282 58.5
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 9.2e-85 318.9 659 36.0
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 2.0e-84 317.8 655 35.1
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 2.0e-84 317.8 687 33.8
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 2.7e-84 317.4 674 37.5
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 2.7e-84 317.4 726 35.4
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 1.3e-83 315.1 644 36.8
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 2.3e-83 314.3 712 35.3
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 7.3e-82 309.3 663 35.4
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 9.5e-82 308.9 570 39.1
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 5.7e-79 299.7 688 34.6
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 1.7e-78 298.1 666 36.2
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 2.9e-78 297.4 861 30.2
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 8.3e-78 295.8 632 35.8
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 5.4e-77 293.1 220 68.2
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 7.0e-77 292.7 477 43.4
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 7.3e-74 282.7 376 43.1
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 6.2e-73 279.6 440 48.6
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 1.4e-72 278.5 319 52.4
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 8.9e-72 275.8 565 36.1
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 4.4e-71 273.5 705 33.0
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 9.2e-69 265.8 264 53.0
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 2.7e-68 264.2 569 36.2
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 1.0e-67 262.3 282 51.4
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.3e-67 261.2 223 61.9
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 6.6e-67 259.6 695 33.2
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.1e-64 252.3 682 35.8
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 1.1e-64 252.3 260 53.8
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.5e-63 248.4 215 59.5
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.4e-61 241.9 629 31.2
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 1.9e-61 241.5 450 37.3
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 1.5e-58 231.9 308 42.9
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 5.2e-56 223.4 293 43.7
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 2.3e-51 208.0 167 74.3
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 9.6e-42 176.0 142 64.8
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 1.2e-39 169.1 209 45.5
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 8.4e-38 162.9 138 56.5
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.4e-37 162.2 418 33.3
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.0e-35 154.5 210 49.0
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 2.1e-28 131.7 207 41.5
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.5e-28 131.0 122 53.3
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 5.1e-27 127.1 326 34.0
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 1.1e-24 119.4 223 35.0
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 5.3e-24 117.1 98 64.3
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 2.8e-17 94.7 292 32.5
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 6.9e-16 90.1 449 29.4
PGSC0003DMG400029919 Solanum tuberosum HOM05D003626 ORTHO05D004255 9.0e-16 89.7 448 28.3
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 4.2e-13 80.9 99 46.5
HPP92_001477 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.3e-06 59.3 86 40.7
TAR375G0736 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.8e-06 57.8 108 44.4
HPP92_028446 Vanilla planifolia HOM05D003626 ORTHO05D004255 8.5e-06 56.6 116 38.8


User provided reference genes

Program Settings