Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 4.4e-169 597.8 290 100.0
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 2.9e-152 542.0 291 88.3
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 5.6e-132 474.6 285 79.3
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 1.1e-124 450.3 282 75.9
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 5.8e-121 438.0 283 74.6
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.7e-120 436.4 280 74.3
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 3.8e-120 435.3 283 73.9
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 4.9e-120 434.9 276 75.0
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 2.4e-119 432.6 276 74.3
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 1.0e-117 427.2 280 72.1
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 5.1e-117 424.9 280 71.8
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 8.7e-117 424.1 280 73.2
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 4.3e-116 421.8 280 71.1
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 8.1e-115 417.5 275 71.6
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 1.4e-114 416.8 279 72.0
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 1.9e-111 406.4 276 70.3
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 2.0e-97 359.8 282 62.4
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 2.6e-97 359.4 270 64.8
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 2.9e-96 355.9 270 63.7
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 8.5e-96 354.4 280 63.2
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 2.5e-95 352.8 283 63.3
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 3.2e-95 352.4 284 62.0
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 3.2e-95 352.4 271 62.4
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 7.2e-95 351.3 279 61.6
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 1.2e-94 350.5 274 62.4
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 1.6e-94 350.1 279 62.0
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 4.6e-94 348.6 244 66.8
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 7.9e-94 347.8 273 60.1
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 1.0e-93 347.4 280 61.1
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 1.0e-93 347.4 276 61.6
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 1.4e-93 347.1 283 60.4
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 1.8e-93 346.7 276 61.6
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.8e-93 346.7 279 60.9
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 1.8e-93 346.7 276 62.7
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.0e-93 345.9 279 60.6
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 5.1e-93 345.1 276 58.3
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 5.1e-93 345.1 276 59.1
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 8.8e-93 344.4 286 59.1
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.1e-92 344.0 286 59.4
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 1.1e-92 344.0 284 60.6
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 1.5e-92 343.6 266 63.5
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.6e-92 342.8 259 64.1
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.6e-92 342.8 275 62.9
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 7.4e-92 341.3 285 59.3
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 7.4e-92 341.3 247 64.4
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 1.3e-91 340.5 275 60.0
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.7e-91 340.1 259 64.1
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.7e-91 340.1 278 58.6
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 2.2e-91 339.7 313 55.3
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 2.8e-91 339.3 280 59.3
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 3.7e-91 339.0 280 58.6
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.7e-91 339.0 280 58.2
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 6.3e-91 338.2 273 61.2
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.4e-90 337.0 280 58.6
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.4e-90 337.0 280 58.6
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.8e-90 336.7 283 57.2
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 2.4e-90 336.3 281 58.7
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 2.4e-90 336.3 334 53.3
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.2e-89 334.0 273 59.0
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.2e-89 334.0 246 63.4
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.5e-89 333.6 271 60.5
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.0e-89 333.2 254 65.4
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 2.0e-89 333.2 276 61.6
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 2.0e-89 333.2 296 55.7
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 4.5e-89 332.0 248 61.7
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.9e-88 329.3 294 55.8
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.8e-88 328.9 294 55.8
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 3.8e-88 328.9 280 57.1
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 5.0e-88 328.6 249 64.3
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 5.0e-88 328.6 249 64.3
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.4e-87 327.0 281 58.0
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 1.4e-87 327.0 278 57.2
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 1.9e-87 326.6 283 56.9
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 1.9e-87 326.6 248 62.5
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 2.5e-87 326.2 275 60.0
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 1.2e-86 323.9 277 58.8
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 1.2e-86 323.9 247 61.1
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 1.6e-86 323.6 307 55.7
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.7e-86 322.8 278 56.5
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 3.6e-86 322.4 246 65.0
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 1.0e-85 320.9 235 63.4
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.4e-85 320.5 280 59.6
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 2.3e-85 319.7 263 61.6
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 2.3e-85 319.7 249 63.1
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 3.0e-85 319.3 263 61.6
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 5.2e-85 318.5 262 60.3
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 1.5e-84 317.0 263 61.2
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.5e-84 317.0 249 62.7
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.5e-84 317.0 277 56.7
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 2.6e-84 316.2 276 58.7
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 2.6e-84 316.2 246 62.2
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 4.4e-84 315.5 277 55.6
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 5.7e-84 315.1 237 63.7
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 9.7e-84 314.3 228 64.5
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 9.7e-84 314.3 284 56.7
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 2.2e-83 313.2 296 56.4
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 2.8e-83 312.8 254 57.5
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 2.8e-83 312.8 310 53.5
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 3.7e-83 312.4 278 56.1
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 8.2e-83 311.2 338 50.3
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.4e-82 310.5 262 59.5
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.2e-81 307.4 285 55.8
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 2.0e-81 306.6 258 58.1
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 4.5e-81 305.4 281 55.5
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 4.5e-81 305.4 281 55.5
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 5.9e-81 305.1 244 62.7
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 5.9e-81 305.1 285 55.4
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 1.3e-80 303.9 274 57.3
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.8e-80 302.4 298 54.0
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.9e-79 300.1 227 63.4
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 3.6e-78 295.8 301 54.8
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 3.0e-77 292.7 317 47.6
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.5e-76 290.4 249 58.6
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 7.5e-76 288.1 251 54.6
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 1.3e-75 287.3 206 66.0
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.2e-70 270.8 238 55.5
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 2.1e-70 270.0 246 52.4
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 7.5e-68 261.5 271 49.8
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 2.4e-66 256.5 246 52.0
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 5.4e-66 255.4 183 66.7
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 4.2e-63 245.7 275 44.7
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 4.2e-63 245.7 275 44.7
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.8e-61 240.4 193 59.6
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 4.4e-60 235.7 194 61.9
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 1.7e-59 233.8 240 48.3
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 8.0e-54 214.9 163 62.0
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 1.0e-53 214.5 158 63.3
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.3e-53 213.4 215 50.2
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 2.0e-52 210.3 199 54.3
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 5.7e-52 208.8 213 51.2
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.4e-50 203.4 162 62.3
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.0e-49 200.3 142 64.1
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 1.5e-47 194.1 244 39.3
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.3e-45 186.8 193 49.2
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 5.2e-45 185.7 214 46.7
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 8.9e-45 184.9 164 58.5
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 1.7e-43 180.6 260 37.7
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 7.0e-42 175.3 191 51.3
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 1.6e-38 164.1 134 57.5
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.1e-37 161.4 117 65.8
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 7.5e-36 155.2 308 35.1
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.5e-31 141.0 123 61.8
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 8.1e-30 135.2 103 59.2
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 1.9e-26 124.0 103 56.3
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 7.6e-20 102.1 99 53.5
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 7.1e-18 95.5 74 58.1
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.6e-17 94.4 276 28.6
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 3.5e-17 93.2 83 61.4
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.0e-16 91.7 86 51.2
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 2.3e-16 90.5 104 43.3
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.9e-15 87.4 77 57.1
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 6.9e-13 79.0 72 51.4
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 1.5e-12 77.8 77 58.4
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 7.6e-12 75.5 36 91.7
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.1e-10 71.6 80 50.0
VMungo1215G0982 Vigna mungo HOM05D003460 ORTHO05D004277 2.8e-06 57.0 32 75.0
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 3.7e-06 56.6 182 28.0


User provided reference genes

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