Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 1.9e-105 386.0 211 100.0
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 1.5e-78 296.6 211 73.9
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 1.3e-64 250.4 220 66.4
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 3.8e-61 238.8 225 61.8
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 7.1e-60 234.6 216 62.5
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 9.0e-55 217.6 225 58.2
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 3.5e-51 205.7 241 55.2
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 1.9e-49 199.9 220 55.9
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 6.1e-43 178.3 248 47.2
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 1.1e-41 174.1 242 49.6
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 1.3e-40 170.6 237 50.6
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 3.7e-40 169.1 221 45.7
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 4.8e-40 168.7 233 47.2
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 4.8e-40 168.7 233 47.2
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 2.4e-39 166.4 242 46.7
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 5.3e-39 165.2 262 45.4
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 2.6e-38 162.9 262 45.4
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 3.4e-38 162.5 237 45.6
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 7.7e-38 161.4 221 47.1
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 7.7e-38 161.4 195 47.2
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 6.5e-37 158.3 123 67.5
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 4.2e-36 155.6 231 45.5
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 9.4e-36 154.5 246 43.1
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 9.4e-36 154.5 240 44.2
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 1.6e-35 153.7 210 42.9
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 1.6e-35 153.7 252 42.5
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 4.6e-35 152.1 207 45.9
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 1.8e-34 150.2 231 45.0
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 1.8e-34 150.2 240 43.8
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 3.0e-34 149.4 234 47.0
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 8.8e-34 147.9 206 46.1
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 1.1e-33 147.5 233 41.2
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 4.3e-33 145.6 228 43.9
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 4.3e-33 145.6 236 42.4
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 5.7e-33 145.2 245 42.0
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 5.7e-33 145.2 237 41.4
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 7.4e-33 144.8 176 48.9
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 9.7e-33 144.4 239 45.2
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 1.7e-32 143.7 169 51.5
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 1.7e-32 143.7 151 51.0
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 2.2e-32 143.3 238 41.6
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 3.7e-32 142.5 246 42.7
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 6.3e-32 141.7 223 40.8
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 8.2e-32 141.4 217 44.2
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 8.2e-32 141.4 216 43.1
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 1.1e-31 141.0 215 42.3
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 1.1e-31 141.0 227 43.2
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 1.1e-31 141.0 238 41.6
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 1.4e-31 140.6 232 41.8
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.8e-31 140.2 223 43.9
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 1.8e-31 140.2 223 43.9
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 1.8e-31 140.2 193 44.0
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 2.4e-31 139.8 228 42.5
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 4.1e-31 139.0 215 42.3
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 6.9e-31 138.3 210 41.9
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 9.1e-31 137.9 217 42.4
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 9.1e-31 137.9 241 40.2
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 1.2e-30 137.5 154 50.6
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.5e-30 137.1 218 42.7
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 1.5e-30 137.1 221 44.3
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 2.6e-30 136.3 192 43.8
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 2.6e-30 136.3 216 43.5
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 2.6e-30 136.3 216 43.5
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 2.6e-30 136.3 224 42.9
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 3.4e-30 136.0 217 41.0
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 3.4e-30 136.0 159 46.5
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 4.5e-30 135.6 207 43.5
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 5.9e-30 135.2 215 43.3
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 5.9e-30 135.2 217 41.0
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 7.7e-30 134.8 192 43.2
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 7.7e-30 134.8 215 41.4
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 1.0e-29 134.4 187 44.9
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 2.2e-29 133.3 209 42.6
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.2e-29 133.3 205 42.0
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 2.9e-29 132.9 214 41.6
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 3.8e-29 132.5 215 42.8
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 3.8e-29 132.5 265 37.4
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 3.8e-29 132.5 233 39.9
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.8e-29 132.5 78 74.4
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 5.0e-29 132.1 232 39.2
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 5.0e-29 132.1 79 73.4
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 5.0e-29 132.1 164 45.7
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 8.5e-29 131.3 208 40.9
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 8.5e-29 131.3 208 40.9
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 1.1e-28 131.0 209 41.1
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 1.9e-28 130.2 201 42.8
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.9e-28 130.2 229 38.9
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.9e-28 130.2 205 42.4
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 4.2e-28 129.0 217 41.0
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 5.5e-28 128.6 78 71.8
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 7.2e-28 128.3 77 72.7
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 7.2e-28 128.3 234 39.7
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.2e-27 127.5 78 70.5
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 2.1e-27 126.7 222 39.6
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 2.1e-27 126.7 79 73.4
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 2.1e-27 126.7 254 37.0
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 2.1e-27 126.7 230 39.1
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.7e-27 126.3 205 45.9
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.7e-27 126.3 218 39.4
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 3.6e-27 125.9 191 41.9
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 3.6e-27 125.9 228 38.6
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 4.7e-27 125.6 223 40.8
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 6.1e-27 125.2 77 70.1
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 6.1e-27 125.2 243 37.9
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 1.4e-26 124.0 213 37.1
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.8e-26 123.6 209 40.2
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 3.9e-26 122.5 206 40.3
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 5.1e-26 122.1 227 41.9
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 5.1e-26 122.1 212 40.6
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 1.1e-25 120.9 137 47.4
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 1.1e-25 120.9 78 67.9
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.1e-25 120.9 216 39.8
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.0e-25 120.2 223 38.1
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 2.6e-25 119.8 209 40.7
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 2.6e-25 119.8 209 40.7
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 3.3e-25 119.4 78 64.1
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.3e-25 119.4 149 46.3
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 1.3e-24 117.5 216 41.2
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 1.3e-24 117.5 77 67.5
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 2.8e-24 116.3 216 40.3
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 8.2e-24 114.8 67 73.1
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 3.1e-23 112.8 212 39.6
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 4.1e-23 112.5 146 46.6
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 7.0e-23 111.7 219 34.7
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 1.5e-22 110.5 207 40.6
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 1.5e-22 110.5 78 65.4
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 3.5e-22 109.4 252 35.3
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 4.5e-22 109.0 85 60.0
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 2.2e-21 106.7 119 52.9
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 5.0e-21 105.5 85 57.6
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 3.2e-20 102.8 81 54.3
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 5.5e-20 102.1 186 41.4
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 7.2e-20 101.7 78 59.0
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 9.4e-20 101.3 78 59.0
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 1.2e-19 100.9 206 34.5
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 6.7e-18 95.1 77 57.1
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 7.5e-17 91.7 77 53.2
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.4e-15 87.4 183 36.6
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 3.5e-14 82.8 80 50.0
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 1.6e-11 73.9 209 32.1
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 3.6e-11 72.8 156 36.5
TPR.G1736 Trifolium pratense HOM05D004801 ORTHO05D005747 2.4e-07 60.1 114 43.0
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 1.6e-06 57.4 163 30.1


User provided reference genes

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