Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 4.5e-183 644.4 320 100.0
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 2.1e-164 582.4 318 90.6
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 5.4e-160 567.8 318 87.7
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 3.6e-156 555.1 320 85.3
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 2.3e-139 499.2 321 76.3
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 3.2e-136 488.8 323 73.1
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 4.1e-136 488.4 323 73.7
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 5.4e-136 488.0 321 74.1
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 1.2e-132 476.9 328 72.6
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 6.2e-132 474.6 313 74.4
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 1.1e-123 447.2 282 77.0
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 3.4e-122 442.2 291 75.3
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 3.8e-121 438.7 277 75.8
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 2.1e-119 433.0 281 73.3
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 3.0e-118 429.1 280 73.2
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 1.9e-117 426.4 278 74.1
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 3.8e-113 412.1 330 66.1
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 2.4e-112 409.5 319 64.6
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 2.1e-111 406.4 329 61.7
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.6e-108 396.7 321 61.7
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 6.9e-107 391.3 319 61.4
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 9.0e-107 391.0 322 61.2
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 9.0e-107 391.0 319 60.8
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.5e-106 390.2 319 60.8
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 2.0e-106 389.8 321 61.4
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 2.6e-106 389.4 306 61.8
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 4.9e-105 385.2 318 60.4
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.1e-104 384.0 318 59.4
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 7.1e-104 381.3 330 59.7
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 7.1e-104 381.3 336 58.6
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 9.3e-104 380.9 336 58.3
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 2.7e-103 379.4 287 61.7
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 2.7e-103 379.4 317 58.4
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 7.9e-103 377.9 329 62.3
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 7.9e-103 377.9 355 54.4
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 1.3e-102 377.1 292 63.4
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 6.7e-102 374.8 268 67.5
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 8.7e-102 374.4 315 59.7
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 1.5e-101 373.6 325 57.5
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.5e-101 373.6 313 59.7
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 1.5e-101 373.6 274 65.3
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 1.9e-101 373.2 289 65.7
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 2.5e-101 372.9 323 59.8
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 2.1e-100 369.8 329 59.3
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 2.1e-100 369.8 306 60.1
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 6.3e-100 368.2 325 57.8
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 8.2e-100 367.9 325 56.6
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 1.1e-99 367.5 326 58.3
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.8e-99 366.7 315 57.5
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 3.1e-99 365.9 314 58.6
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 3.1e-99 365.9 342 54.4
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 6.9e-99 364.8 377 52.3
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 1.5e-98 363.6 304 58.6
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 2.0e-98 363.2 309 58.9
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 3.4e-98 362.5 315 58.1
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.0e-97 360.9 325 58.5
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 1.0e-97 360.9 249 66.3
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.7e-97 360.1 282 61.3
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 3.8e-97 359.0 282 61.0
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.1e-96 357.5 279 62.7
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 1.4e-96 357.1 306 60.5
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 4.2e-96 355.5 330 55.5
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 7.2e-96 354.8 278 62.9
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 7.2e-96 354.8 312 57.4
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 3.6e-95 352.4 236 68.6
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 6.1e-95 351.7 318 56.3
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 6.1e-95 351.7 318 56.3
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 7.9e-95 351.3 325 58.5
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.0e-94 350.9 324 54.6
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.3e-94 350.5 280 61.4
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.8e-94 350.1 296 59.8
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.3e-94 349.7 282 61.3
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 6.7e-94 348.2 325 58.2
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 1.5e-93 347.1 300 58.3
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 4.3e-93 345.5 323 57.3
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.3e-93 345.5 324 58.6
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 4.3e-93 345.5 323 56.3
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.7e-93 345.1 278 60.4
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 2.8e-92 342.8 359 52.6
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 2.8e-92 342.8 314 54.8
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 1.8e-91 340.1 303 57.8
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.3e-91 338.6 278 59.0
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 1.5e-90 337.0 317 55.2
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 1.5e-90 337.0 300 57.7
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 2.0e-90 336.7 299 56.5
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 2.0e-90 336.7 308 55.5
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 2.6e-90 336.3 250 63.2
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 2.6e-90 336.3 288 59.4
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 3.4e-90 335.9 313 55.3
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 7.7e-90 334.7 303 56.8
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 7.7e-90 334.7 282 58.2
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.0e-89 334.3 284 56.3
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 1.0e-89 334.3 316 54.4
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 1.7e-89 333.6 250 62.8
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 5.0e-89 332.0 314 55.4
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 5.0e-89 332.0 284 58.5
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 5.0e-89 332.0 258 61.6
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 8.5e-89 331.3 315 54.6
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.1e-88 330.9 324 53.1
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 1.1e-88 330.9 379 48.5
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 4.2e-88 328.9 252 59.9
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.2e-87 327.4 295 55.3
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 1.6e-87 327.0 317 53.6
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 2.7e-87 326.2 317 53.3
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.3e-86 323.2 373 50.7
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.9e-86 322.4 324 51.5
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 4.4e-85 318.9 328 54.0
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 2.2e-84 316.6 284 56.3
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 1.1e-83 314.3 329 51.4
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.4e-83 313.9 311 52.4
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.8e-83 313.5 290 55.9
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 5.3e-83 312.0 226 65.9
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 5.9e-82 308.5 278 52.9
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 5.0e-81 305.4 214 69.6
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 2.6e-77 293.1 324 47.5
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 2.9e-73 279.6 310 47.4
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 7.2e-72 275.0 238 57.1
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.5e-69 267.3 264 50.8
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 2.8e-68 263.1 193 66.8
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.4e-67 260.8 225 53.8
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 2.0e-66 256.9 218 59.2
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 1.0e-65 254.6 235 50.6
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 1.0e-65 254.6 235 50.6
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 5.5e-64 248.8 211 58.8
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.7e-63 246.5 213 57.3
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 3.0e-62 243.0 235 50.6
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 1.8e-59 233.8 152 71.1
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 5.9e-58 228.8 201 59.2
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 2.3e-57 226.9 213 55.9
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.0e-54 216.1 144 67.4
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 4.4e-53 212.6 217 51.2
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 3.1e-51 206.5 271 40.2
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 3.5e-50 203.0 161 60.2
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 7.8e-50 201.8 165 61.2
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 7.3e-48 195.3 249 40.2
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.6e-47 194.1 196 55.1
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.7e-47 192.6 214 49.1
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 3.0e-46 189.9 192 49.5
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 9.2e-43 178.3 159 56.6
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 4.0e-38 162.9 146 53.4
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 1.5e-37 161.0 287 36.9
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 3.2e-35 153.3 166 51.8
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.1e-30 138.3 108 58.3
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 3.7e-28 129.8 110 54.5
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 1.4e-27 127.9 140 50.7
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 8.9e-22 108.6 150 46.0
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 4.9e-20 102.8 289 30.8
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.2e-18 98.2 76 63.2
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 2.1e-18 97.4 72 56.9
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.0e-17 93.6 75 57.3
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 5.6e-16 89.4 72 56.9
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 9.6e-16 88.6 105 41.9
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 2.4e-14 84.0 85 50.6
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.6e-13 80.5 119 39.5
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 1.1e-11 75.1 36 91.7
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 2.1e-07 60.8 181 27.1
VMungo1215G0982 Vigna mungo HOM05D003460 ORTHO05D004277 2.4e-06 57.4 31 77.4


User provided reference genes

Program Settings