Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G103400 Phaseolus vulgaris HOM05D000141 ORTHO05D010125 2.2e-31 138.3 67 100.0
Phvul.001G130300 Phaseolus vulgaris HOM05D000141 ORTHO05D000780 2.7e-13 78.2 53 77.4
Medtr7g091290 Medicago truncatula HOM05D000141 ORTHO05D000780 3.5e-13 77.8 61 72.1
arahy.Tifrunner.gnm1.ann1.JU456M Arachis hypogaea HOM05D000141 ORTHO05D000780 7.9e-13 76.6 61 70.5
arahy.Tifrunner.gnm1.ann1.SFU112 Arachis hypogaea HOM05D000141 ORTHO05D000780 7.9e-13 76.6 61 70.5
TPR.G18240 Trifolium pratense HOM05D000141 ORTHO05D000780 3.9e-12 74.3 61 68.9
Psat3g073920 Pisum sativum HOM05D000141 ORTHO05D000780 6.7e-12 73.6 54 72.2
Ca_08441_v3 Cicer arietinum L. HOM05D000141 ORTHO05D000780 1.5e-11 72.4 54 70.4
Glyma.19G137500 Glycine max HOM05D000141 ORTHO05D000780 1.9e-11 72.0 61 68.9
Lj1g0025747 Lotus japonicus HOM05D000141 ORTHO05D000780 1.9e-11 72.0 54 68.5
Glyma.03G134900 Glycine max HOM05D000141 ORTHO05D000780 1.3e-10 69.3 61 67.2
arahy.Tifrunner.gnm1.ann1.ID7CKM Arachis hypogaea HOM05D007788 ORTHO05D010125 1.8e-09 65.5 60 65.0
AT3G10310 Arabidopsis thaliana HOM05D000141 ORTHO05D000780 6.9e-09 63.5 52 67.3
HanXRQChr10g0283351 Helianthus annuus HOM05D000141 ORTHO05D000780 6.9e-09 63.5 55 61.8
AL3G21640 Arabidopsis lyrata HOM05D000141 ORTHO05D000780 9.0e-09 63.2 52 67.3
BcaC05g29478 Brassica carinata HOM05D000141 ORTHO05D000780 9.0e-09 63.2 52 67.3
BcaNung06563 Brassica carinata HOM05D000141 ORTHO05D000780 9.0e-09 63.2 52 67.3
A05p38830 Brassica napus HOM05D000141 ORTHO05D000780 9.0e-09 63.2 52 67.3
C05p57860 Brassica napus HOM05D000141 ORTHO05D000780 9.0e-09 63.2 52 67.3
BolC5t34441H Brassica oleracea HOM05D000141 ORTHO05D000780 9.0e-09 63.2 52 67.3
BraA05t22674Z Brassica rapa HOM05D000141 ORTHO05D000780 9.0e-09 63.2 52 67.3
RcHm_v2.0_Chr3g0483041 Rosa chinensis HOM05D000141 ORTHO05D000780 9.0e-09 63.2 55 61.8
TWI53G1155 Tripterygium wilfordii HOM05D000141 ORTHO05D000780 9.0e-09 63.2 58 62.1
ECA236G0558 Erigeron canadensis HOM05D000141 ORTHO05D000780 1.2e-08 62.8 58 60.3
Carub.0003s0949 Capsella rubella HOM05D000141 ORTHO05D000780 2.0e-08 62.0 52 65.4
Haze_19824 Corylus avellana HOM05D000141 ORTHO05D000780 2.0e-08 62.0 60 60.0
Haze_19829 Corylus avellana HOM05D000141 ORTHO05D000780 2.0e-08 62.0 60 60.0
QL05p062269 Quercus lobata HOM05D000141 ORTHO05D000780 2.0e-08 62.0 60 58.3
QL07p001610 Quercus lobata HOM05D000141 ORTHO05D000780 2.0e-08 62.0 60 58.3
Sp3g08570 Schrenkiella parvula HOM05D000141 ORTHO05D000780 2.0e-08 62.0 48 68.8
TWI74G1537 Tripterygium wilfordii HOM05D000141 ORTHO05D000780 2.0e-08 62.0 59 61.0
Thhalv10019993m.g Eutrema salsugineum HOM05D000141 ORTHO05D000780 2.6e-08 61.6 58 62.1
FvH4_6g24140 Fragaria vesca HOM05D000141 ORTHO05D000780 2.6e-08 61.6 55 61.8
FAN14G3678 Fragaria x ananassa HOM05D000141 ORTHO05D000780 2.6e-08 61.6 55 61.8
THA.LOC104804702 Tarenaya hassleriana HOM05D000141 ORTHO05D000780 2.6e-08 61.6 58 63.8
FAN09G2894 Fragaria x ananassa HOM05D000141 ORTHO05D000780 3.4e-08 61.2 55 61.8
Hma1.2p1_0788F.1_g218060 Hydrangea macrophylla HOM05D000141 ORTHO05D000780 3.4e-08 61.2 60 58.3
Sabra06G0033900 Salix brachista HOM05D000141 ORTHO05D000780 3.4e-08 61.2 55 63.6
Lsat_1_v5_gn_8_81540 Lactuca sativa HOM05D000141 ORTHO05D000780 4.5e-08 60.8 55 60.0
Manes.08G053050 Manihot esculenta HOM05D000141 ORTHO05D000780 4.5e-08 60.8 58 60.3
THA.LOC104816416 Tarenaya hassleriana HOM05D000141 ORTHO05D000780 5.8e-08 60.5 58 62.1
Aa31LG3G2890 Aethionema arabicum HOM05D000141 ORTHO05D000780 7.6e-08 60.1 55 63.6
BolC3t16679H Brassica oleracea HOM05D000141 ORTHO05D000780 7.6e-08 60.1 48 68.8
arahy.Tifrunner.gnm1.ann1.RNM1JD Arachis hypogaea HOM05D007334 ORTHO05D031554 1.0e-07 59.7 59 61.0
CAN.G16991.1 Capsicum annuum HOM05D000141 ORTHO05D000780 1.0e-07 59.7 49 61.2
CiPaw.09G039400 Carya illinoinensis HOM05D000141 ORTHO05D000780 1.0e-07 59.7 55 60.0
Duzib106G2056 Durio zibethinus HOM05D000141 ORTHO05D000780 1.0e-07 59.7 58 60.3
Prupe.7G055800 Prunus persica HOM05D000141 ORTHO05D000780 1.0e-07 59.7 54 61.1
Gohir.A01G192600 Gossypium hirsutum HOM05D000141 ORTHO05D000780 1.7e-07 58.9 58 60.3
Gohir.D01G177200 Gossypium hirsutum HOM05D000141 ORTHO05D000780 2.2e-07 58.5 55 61.8
Gorai.002G226000 Gossypium raimondii HOM05D000141 ORTHO05D000780 2.2e-07 58.5 55 61.8
COL.COLO4_20030 Corchorus olitorius HOM05D000141 ORTHO05D000780 3.8e-07 57.8 57 57.9
CARHR084790 Cardamine hirsuta HOM05D000141 ORTHO05D000780 4.9e-07 57.4 45 68.9
Ciclev10004492m.g Citrus clementina HOM05D000141 ORTHO05D000780 4.9e-07 57.4 55 58.2
Eucgr.G00428 Eucalyptus grandis HOM05D000141 ORTHO05D000780 4.9e-07 57.4 55 58.2
FAN02G0011 Fragaria x ananassa HOM05D000141 ORTHO05D000780 4.9e-07 57.4 55 60.0
Peaxi162Scf00130g00518 Petunia axillaris HOM05D000141 ORTHO05D000780 4.9e-07 57.4 55 56.4
BcaB04g18587 Brassica carinata HOM05D000141 ORTHO05D000780 6.5e-07 57.0 46 65.2
CAN.G2032.1 Capsicum annuum HOM05D000141 ORTHO05D000780 6.5e-07 57.0 54 59.3
MD12G1076000 Malus domestica HOM05D000141 ORTHO05D000780 6.5e-07 57.0 55 56.4
Actinidia17233 Actinidia chinensis HOM05D000141 ORTHO05D000780 8.4e-07 56.6 57 56.1
Cpa.g.sc329.2 Carica papaya HOM05D000141 ORTHO05D000780 8.4e-07 56.6 55 56.4
Eucgr.A02334 Eucalyptus grandis HOM05D000141 ORTHO05D000780 8.4e-07 56.6 55 56.4
FAN05G1533 Fragaria x ananassa HOM05D000141 ORTHO05D000780 8.4e-07 56.6 55 58.2
PGR004G2467 Punica granatum HOM05D000141 ORTHO05D000780 8.4e-07 56.6 58 56.9
MELO3C020742.2 Cucumis melo HOM05D000141 ORTHO05D000780 1.4e-06 55.8 58 58.6
Actinidia22799 Actinidia chinensis HOM05D000141 ORTHO05D000780 1.9e-06 55.5 54 57.4
Eucgr.D00866 Eucalyptus grandis HOM05D000141 ORTHO05D000780 1.9e-06 55.5 51 58.8
Sed0021099 Sechium edule HOM05D000141 ORTHO05D000780 1.9e-06 55.5 56 58.9
PGSC0003DMG400027257 Solanum tuberosum HOM05D000141 ORTHO05D000780 1.9e-06 55.5 55 54.5
GSVIVG01033252001 Vitis vinifera HOM05D000141 ORTHO05D000780 1.9e-06 55.5 54 57.4
Cc06_g17730 Coffea canephora HOM05D000141 ORTHO05D000780 2.5e-06 55.1 55 58.2
Nitab4.5_0000636g0100 Nicotiana tabacum HOM05D000141 ORTHO05D000780 2.5e-06 55.1 54 51.9
CAN.G2052.2 Capsicum annuum HOM05D000141 ORTHO05D000780 3.2e-06 54.7 49 59.2
Oeu062943.1 Olea europaea HOM05D000141 ORTHO05D000780 3.2e-06 54.7 55 58.2
SalBow6G3399 Salvia bowleyana HOM05D000141 ORTHO05D000780 3.2e-06 54.7 55 54.5
SalBow6G3691 Salvia bowleyana HOM05D000141 ORTHO05D000780 3.2e-06 54.7 55 54.5
ClCG04G004080 Citrullus lanatus HOM05D000141 ORTHO05D000780 4.2e-06 54.3 56 57.1
CsaV3_4G022100 Cucumis sativus L. HOM05D000141 ORTHO05D000780 4.2e-06 54.3 44 68.2
MBI04_g06594_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001860 4.2e-06 54.3 54 51.9
Nn3g18610 Nelumbo nucifera HOM05D000141 ORTHO05D001860 4.2e-06 54.3 54 55.6
Rhsim04G0102700 Rhododendron simsii HOM05D000141 ORTHO05D000780 4.2e-06 54.3 58 53.4
Atru.chr1.1137 Acer truncatum HOM05D000141 ORTHO05D000780 5.5e-06 53.9 55 56.4
CSS0002874 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D000780 5.5e-06 53.9 55 50.9
CSS0015830 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D000780 5.5e-06 53.9 55 50.9
CSS0021973 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D000780 5.5e-06 53.9 55 50.9
CSS0033447 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D000780 5.5e-06 53.9 55 50.9
Migut.A00761 Erythranthe guttata HOM05D000141 ORTHO05D001860 7.1e-06 53.5 54 53.7
Nn2g15186 Nelumbo nucifera HOM05D000141 ORTHO05D000780 7.1e-06 53.5 58 53.4
Aqoxy7G00325 Aquilegia oxysepala HOM05D000141 ORTHO05D001860 9.3e-06 53.1 54 51.9
MSTRG.11983 Avicennia marina HOM05D000141 ORTHO05D001860 9.3e-06 53.1 54 53.7
MD14G1074400 Malus domestica HOM05D000141 ORTHO05D000780 9.3e-06 53.1 55 54.5
Oeu064087.2 Olea europaea HOM05D000141 ORTHO05D001860 9.3e-06 53.1 55 49.1


User provided reference genes

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