Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.2e-63 246.5 137 100.0
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 4.2e-29 131.7 78 82.1
TPR.G36647 Trifolium pratense HOM05D004540 ORTHO05D004852 3.0e-19 99.0 75 64.0
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 2.0e-18 96.3 54 85.2
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 3.7e-17 92.0 76 63.2
Medtr6g034805 Medicago truncatula HOM05D004540 ORTHO05D004852 1.8e-16 89.7 75 57.3
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.8e-16 89.7 77 62.3
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 5.3e-16 88.2 76 56.6
Lalb_Chr03g0035181 Lupinus albus HOM05D004540 ORTHO05D004852 4.5e-15 85.1 76 55.3
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 1.0e-14 84.0 76 55.3
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 3.8e-14 82.0 75 50.7
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.2e-13 79.0 75 52.0
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 4.2e-13 78.6 73 49.3
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 9.4e-13 77.4 67 56.7
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 1.2e-12 77.0 79 51.9
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.1e-12 76.3 79 51.9
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 4.7e-12 75.1 76 53.9
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 1.4e-11 73.6 88 48.9
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 4.0e-11 72.0 78 52.6
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 5.2e-11 71.6 73 46.6
Lj2g0012443 Lotus japonicus HOM05D004540 ORTHO05D004852 6.8e-11 71.2 60 56.7
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 1.5e-10 70.1 74 51.4
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 2.0e-10 69.7 77 45.5
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 4.4e-10 68.6 75 49.3
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 5.7e-10 68.2 73 50.7
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 5.7e-10 68.2 66 54.5
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.7e-09 66.6 74 51.4
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 1.7e-09 66.6 76 47.4
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 2.2e-09 66.2 78 44.9
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 2.8e-09 65.9 71 49.3
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 4.8e-09 65.1 65 53.8
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.1e-08 63.9 62 51.6
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.1e-08 63.9 71 50.7
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 1.8e-08 63.2 65 50.8
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 2.4e-08 62.8 71 47.9
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 2.4e-08 62.8 65 50.8
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 2.4e-08 62.8 88 46.6
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 4.1e-08 62.0 78 41.0
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 4.1e-08 62.0 71 47.9
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 5.4e-08 61.6 53 56.6
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 7.0e-08 61.2 88 43.2
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 7.0e-08 61.2 70 48.6
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 9.1e-08 60.8 64 50.0
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 1.2e-07 60.5 52 55.8
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.5e-07 58.9 69 49.3
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 3.5e-07 58.9 52 55.8
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 4.5e-07 58.5 68 45.6
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 5.9e-07 58.2 78 44.9
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.9e-07 58.2 71 46.5
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 5.9e-07 58.2 65 41.5
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 7.7e-07 57.8 74 44.6
Migut.C00992 Erythranthe guttata HOM05D004540 ORTHO05D004852 7.7e-07 57.8 59 47.5
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 7.7e-07 57.8 71 46.5
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 1.3e-06 57.0 70 45.7
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.7e-06 56.6 73 45.2
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 1.7e-06 56.6 63 47.6
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 1.7e-06 56.6 63 47.6
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.7e-06 56.6 64 43.8
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 2.3e-06 56.2 65 49.2
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 2.9e-06 55.8 76 44.7
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.9e-06 55.8 76 44.7
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.9e-06 55.8 76 44.7
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.9e-06 55.8 76 44.7
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.9e-06 55.8 72 45.8
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.9e-06 55.8 72 45.8
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.9e-06 55.8 72 45.8
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.0e-06 55.1 64 46.9
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 5.0e-06 55.1 64 46.9
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 5.0e-06 55.1 63 44.4
Os04g0418100 Oryza sativa ssp. japonica HOM05D047234 ORTHO05D004852 6.6e-06 54.7 46 56.5
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 6.6e-06 54.7 76 43.4
arahy.Tifrunner.gnm1.ann1.0FA8VF Arachis hypogaea HOM05D000610 ORTHO05D023722 8.6e-06 54.3 42 57.1
Cpa.g.sc49.40 Carica papaya HOM05D004540 ORTHO05D004852 8.6e-06 54.3 71 43.7
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 8.6e-06 54.3 70 45.7


User provided reference genes

Program Settings