Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G098394 Phaseolus vulgaris HOM05D003607 ORTHO05D004049 1.0e-57 226.5 110 100.0
Phvul.001G186900 Phaseolus vulgaris HOM05D000358 ORTHO05D002575 3.1e-22 108.6 52 96.2
VMungo1383G0570 Vigna mungo HOM05D000358 ORTHO05D002575 3.1e-22 108.6 52 96.2
Phvul.001G189100 Phaseolus vulgaris HOM05D003607 ORTHO05D004049 1.1e-19 100.1 51 94.1
Glyma.19G192100 Glycine max HOM05D000358 ORTHO05D002575 4.1e-19 98.2 55 83.6
VMungo1383G3486 Vigna mungo HOM05D003607 ORTHO05D004049 4.6e-18 94.7 51 88.2
Glyma.19G194200 Glycine max HOM05D003607 ORTHO05D004049 5.1e-17 91.3 51 84.3
Glyma.03G194400 Glycine max HOM05D003607 ORTHO05D004049 8.7e-17 90.5 51 84.3
Medtr7g104430 Medicago truncatula HOM05D003607 ORTHO05D004049 1.1e-16 90.1 51 82.4
Glyma.03G191400 Glycine max HOM05D000358 ORTHO05D002575 1.5e-16 89.7 55 80.0
Lalb_Chr01g0018221 Lupinus albus HOM05D003607 ORTHO05D004049 1.2e-15 86.7 51 86.3
Ca_08996_v3 Cicer arietinum L. HOM05D003607 ORTHO05D004049 3.6e-15 85.1 51 82.4
TPR.G19550 Trifolium pratense HOM05D003607 ORTHO05D004049 3.6e-15 85.1 51 82.4
Psat3g033800 Pisum sativum HOM05D003607 ORTHO05D004049 1.1e-14 83.6 51 80.4
Lalb_Chr25g0288381 Lupinus albus HOM05D003607 ORTHO05D004049 4.0e-14 81.6 51 80.4
arahy.Tifrunner.gnm1.ann1.0UXM82 Arachis hypogaea HOM05D003607 ORTHO05D004049 2.0e-13 79.3 51 78.4
arahy.Tifrunner.gnm1.ann1.66EI83 Arachis hypogaea HOM05D003607 ORTHO05D004049 2.0e-13 79.3 51 78.4
Lj1g0001702 Lotus japonicus HOM05D003607 ORTHO05D004049 4.4e-13 78.2 51 78.4
Lj1g0002968 Lotus japonicus HOM05D000358 ORTHO05D002575 8.4e-12 73.9 59 66.1
Atru.chr8.1565 Acer truncatum HOM05D003607 ORTHO05D004049 3.2e-11 72.0 51 70.6
CiPaw.10G008300 Carya illinoinensis HOM05D003607 ORTHO05D004049 3.2e-11 72.0 54 70.4
Cfa016592 Carpinus fangiana HOM05D003607 ORTHO05D004049 9.3e-11 70.5 55 67.3
Haze_19593 Corylus avellana HOM05D003607 ORTHO05D004049 1.6e-10 69.7 55 67.3
Lalb_Chr25g0288641 Lupinus albus HOM05D000358 ORTHO05D002575 1.6e-10 69.7 57 64.9
Duzib093G2170 Durio zibethinus HOM05D000358 ORTHO05D002575 2.1e-10 69.3 54 61.1
QL07p040448 Quercus lobata HOM05D000358 ORTHO05D002575 2.1e-10 69.3 54 63.0
RcHm_v2.0_Chr3g0472991 Rosa chinensis HOM05D003607 ORTHO05D004049 2.1e-10 69.3 54 64.8
TPR.G10252 Trifolium pratense HOM05D000358 ORTHO05D002575 2.1e-10 69.3 55 65.5
Gohir.A01G139800 Gossypium hirsutum HOM05D000358 ORTHO05D002575 2.7e-10 68.9 54 63.0
Psat3g035760 Pisum sativum HOM05D000358 ORTHO05D002575 2.7e-10 68.9 56 66.1
Potri.004G098000 Populus trichocarpa HOM05D000358 ORTHO05D002575 2.7e-10 68.9 53 62.3
Rhsim03G0081000 Rhododendron simsii HOM05D000358 ORTHO05D002575 2.7e-10 68.9 52 63.5
Ciclev10012570m.g Citrus clementina HOM05D003607 ORTHO05D004049 3.5e-10 68.6 51 70.6
Sed0018362 Sechium edule HOM05D003607 ORTHO05D004049 3.5e-10 68.6 55 72.7
Duzib128G1155 Durio zibethinus HOM05D000358 ORTHO05D002575 4.6e-10 68.2 54 59.3
Haze_19542 Corylus avellana HOM05D000358 ORTHO05D002575 6.0e-10 67.8 54 61.1
Thecc.05G081500 Theobroma cacao HOM05D000358 ORTHO05D002575 6.0e-10 67.8 54 57.4
Dinv21250 Davidia involucrata HOM05D000358 ORTHO05D002575 7.8e-10 67.4 50 64.0
FAN14G5030 Fragaria x ananassa HOM05D003607 ORTHO05D004049 1.0e-09 67.0 54 63.0
Gorai.002G159700 Gossypium raimondii HOM05D000358 ORTHO05D002575 1.3e-09 66.6 54 61.1
Prupe.7G116700 Prunus persica HOM05D000358 ORTHO05D002575 1.3e-09 66.6 54 59.3
Oeu040535.1 Olea europaea HOM05D000358 ORTHO05D002575 1.7e-09 66.2 51 58.8
QL07p039292 Quercus lobata HOM05D003607 ORTHO05D004049 3.0e-09 65.5 55 63.6
MD14G1016600 Malus domestica HOM05D000358 ORTHO05D002575 3.9e-09 65.1 51 58.8
Potri.009G152600 Populus trichocarpa HOM05D003607 ORTHO05D004049 3.9e-09 65.1 53 71.7
Dinv19831 Davidia involucrata HOM05D000358 ORTHO05D002575 5.1e-09 64.7 48 60.4
Eucgr.A01507 Eucalyptus grandis HOM05D003607 ORTHO05D004049 5.1e-09 64.7 55 67.3
FAN01G1204 Fragaria x ananassa HOM05D003607 ORTHO05D004049 6.6e-09 64.3 54 61.1
CANSAT80G1935 Cannabis sativa HOM05D003607 ORTHO05D004049 8.7e-09 63.9 55 67.3
Cfa016537 Carpinus fangiana HOM05D000358 ORTHO05D002575 8.7e-09 63.9 54 59.3
Ciclev10012276m.g Citrus clementina HOM05D000358 ORTHO05D002575 8.7e-09 63.9 54 57.4
FvH4_6g17950 Fragaria vesca HOM05D000358 ORTHO05D002575 8.7e-09 63.9 54 55.6
FAN14G2704 Fragaria x ananassa HOM05D000722 ORTHO05D000590 8.7e-09 63.9 54 55.6
MD12G1018600 Malus domestica HOM05D000358 ORTHO05D002575 8.7e-09 63.9 51 56.9
FAN02G2264 Fragaria x ananassa HOM05D000722 ORTHO05D000590 1.1e-08 63.5 54 55.6
Eucgr.K02075 Eucalyptus grandis HOM05D000358 ORTHO05D002575 1.5e-08 63.2 54 55.6
FAN05G1334 Fragaria x ananassa HOM05D000722 ORTHO05D000590 1.5e-08 63.2 54 55.6
FAN05G2304 Fragaria x ananassa HOM05D000722 ORTHO05D000590 1.5e-08 63.2 54 55.6
FAN09G1494 Fragaria x ananassa HOM05D000722 ORTHO05D000590 1.5e-08 63.2 54 55.6
MD14G1020900 Malus domestica HOM05D003607 ORTHO05D004049 1.5e-08 63.2 55 65.5
Gohir.D01G129000 Gossypium hirsutum HOM05D000358 ORTHO05D002575 1.9e-08 62.8 54 59.3
Sabra09G0120500 Salix brachista HOM05D003607 ORTHO05D004049 1.9e-08 62.8 53 67.9
Sp4g18520 Schrenkiella parvula HOM05D003607 ORTHO05D004049 1.9e-08 62.8 56 64.3
Atru.chr8.1628 Acer truncatum HOM05D000358 ORTHO05D002575 3.3e-08 62.0 55 54.5
Medtr7g103900 Medicago truncatula HOM05D000358 ORTHO05D002575 3.3e-08 62.0 56 62.5
Sabra04G0127600 Salix brachista HOM05D003607 ORTHO05D004049 3.3e-08 62.0 53 67.9
THA.LOC104823483 Tarenaya hassleriana HOM05D003607 ORTHO05D004049 3.3e-08 62.0 56 57.1
FAN04G1633 Fragaria x ananassa HOM05D003607 ORTHO05D004049 4.3e-08 61.6 55 63.6
FAN19G1909 Fragaria x ananassa HOM05D003607 ORTHO05D004049 4.3e-08 61.6 55 63.6
FAN26G0628 Fragaria x ananassa HOM05D003607 ORTHO05D004049 4.3e-08 61.6 55 63.6
Potri.004G190800 Populus trichocarpa HOM05D003607 ORTHO05D004049 4.3e-08 61.6 53 69.8
Potri.017G116200 Populus trichocarpa HOM05D000358 ORTHO05D002575 4.3e-08 61.6 53 54.7
RcHm_v2.0_Chr3g0491231 Rosa chinensis HOM05D003607 ORTHO05D004049 4.3e-08 61.6 55 58.2
Cpa.g.sc5.73 Carica papaya HOM05D000358 ORTHO05D002575 5.6e-08 61.2 54 55.6
Thhalv10017131m.g Eutrema salsugineum HOM05D003607 ORTHO05D004049 5.6e-08 61.2 56 62.5
Manes.09G056401 Manihot esculenta HOM05D003607 ORTHO05D004049 5.6e-08 61.2 52 63.5
Prupe.7G112800 Prunus persica HOM05D003607 ORTHO05D004049 5.6e-08 61.2 55 65.5
AL4G32410 Arabidopsis lyrata HOM05D003607 ORTHO05D004049 7.3e-08 60.8 56 62.5
AT2G36300 Arabidopsis thaliana HOM05D003607 ORTHO05D004049 7.3e-08 60.8 56 62.5
CiPaw.09G012700 Carya illinoinensis HOM05D003607 ORTHO05D004049 7.3e-08 60.8 54 63.0
FAN02G1747 Fragaria x ananassa HOM05D003607 ORTHO05D004049 7.3e-08 60.8 55 61.8
FAN09G3360 Fragaria x ananassa HOM05D003607 ORTHO05D004049 7.3e-08 60.8 54 59.3
TWI53G1152 Tripterygium wilfordii HOM05D000358 ORTHO05D002575 7.3e-08 60.8 54 53.7
FAN05G2511 Fragaria x ananassa HOM05D003607 ORTHO05D004049 9.6e-08 60.5 54 61.1
FAN05G4077 Fragaria x ananassa HOM05D003607 ORTHO05D004049 9.6e-08 60.5 54 61.1
Manes.08G021300 Manihot esculenta HOM05D000358 ORTHO05D002575 9.6e-08 60.5 52 57.7
Sabra04G0081500 Salix brachista HOM05D000358 ORTHO05D002575 9.6e-08 60.5 53 52.8
CSS0050304 Camellia sinensis var. sinensis HOM05D000358 ORTHO05D002575 1.3e-07 60.1 49 55.1
Carub.0005s1924 Capsella rubella HOM05D003607 ORTHO05D004049 2.1e-07 59.3 54 59.3
FAN23G0012 Fragaria x ananassa HOM05D003607 ORTHO05D004049 2.1e-07 59.3 55 61.8
Manes.08G024200 Manihot esculenta HOM05D003607 ORTHO05D004049 2.1e-07 59.3 51 64.7
A05p09560 Brassica napus HOM05D003607 ORTHO05D004049 2.8e-07 58.9 57 54.4
C04p11820 Brassica napus HOM05D003607 ORTHO05D004049 2.8e-07 58.9 57 54.4
BolC4t22831H Brassica oleracea HOM05D003607 ORTHO05D004049 2.8e-07 58.9 57 54.4
BraA05t19909Z Brassica rapa HOM05D003607 ORTHO05D004049 2.8e-07 58.9 57 54.4
THA.LOC104804679 Tarenaya hassleriana HOM05D003607 ORTHO05D004049 2.8e-07 58.9 57 56.1
DCAR_013362 Daucus carota HOM05D000358 ORTHO05D002575 3.6e-07 58.5 53 50.9
Duzib128G1249 Durio zibethinus HOM05D003607 ORTHO05D004049 3.6e-07 58.5 53 64.2
MD12G1023700 Malus domestica HOM05D003607 ORTHO05D004049 3.6e-07 58.5 54 59.3
RcHm_v2.0_Chr3g0472211 Rosa chinensis HOM05D000358 ORTHO05D002575 3.6e-07 58.5 54 50.0
Sabra17G0096200 Salix brachista HOM05D000358 ORTHO05D002575 3.6e-07 58.5 53 50.9
TAR633G2484 Trochodendron aralioides HOM05D000358 ORTHO05D002575 3.6e-07 58.5 54 53.7
COL.COLO4_29767 Corchorus olitorius HOM05D003607 ORTHO05D004049 4.8e-07 58.2 53 64.2
Thecc.05G087200 Theobroma cacao HOM05D003607 ORTHO05D004049 4.8e-07 58.2 53 64.2
Oeu039825.1 Olea europaea HOM05D000358 ORTHO05D002575 6.2e-07 57.8 52 55.8
AT3G52760 Arabidopsis thaliana HOM05D003607 ORTHO05D004049 1.1e-06 57.0 53 58.5
CiPaw.09G009000 Carya illinoinensis HOM05D000358 ORTHO05D002575 1.1e-06 57.0 54 53.7
Duzib093G0509 Durio zibethinus HOM05D003607 ORTHO05D004049 1.1e-06 57.0 53 62.3
Duzib106G1766 Durio zibethinus HOM05D000444 ORTHO05D004049 1.1e-06 57.0 53 64.2
Sopen11g003000 Solanum pennellii HOM05D003607 ORTHO05D004049 1.1e-06 57.0 52 57.7
TAR623G0575 Trochodendron aralioides HOM05D000358 ORTHO05D002575 1.1e-06 57.0 53 54.7
CARHR130570 Cardamine hirsuta HOM05D003607 ORTHO05D004049 1.4e-06 56.6 56 58.9
Cpa.g.sc5.37 Carica papaya HOM05D003607 ORTHO05D004049 1.4e-06 56.6 55 58.2
ClCG10G019070 Citrullus lanatus HOM05D003607 ORTHO05D004049 1.4e-06 56.6 54 63.0
Cc06_g05310 Coffea canephora HOM05D000358 ORTHO05D002575 1.4e-06 56.6 48 54.2
MELO3C009463.2 Cucumis melo HOM05D003607 ORTHO05D004049 1.4e-06 56.6 54 63.0
CsaV3_3G037170 Cucumis sativus L. HOM05D003607 ORTHO05D004049 1.4e-06 56.6 54 63.0
Os03g0289200 Oryza sativa ssp. japonica HOM05D003607 ORTHO05D004049 1.4e-06 56.6 51 56.9
Sed0001726 Sechium edule HOM05D003607 ORTHO05D004049 1.4e-06 56.6 54 63.0
CANSAT80G1734 Cannabis sativa HOM05D000358 ORTHO05D002575 1.8e-06 56.2 54 57.4
CiPaw.10G005700 Carya illinoinensis HOM05D000358 ORTHO05D002575 1.8e-06 56.2 54 51.9
Gohir.A01G209000 Gossypium hirsutum HOM05D000358 ORTHO05D002575 1.8e-06 56.2 49 59.2
Gohir.D01G198000 Gossypium hirsutum HOM05D000358 ORTHO05D002575 1.8e-06 56.2 49 61.2
Gorai.002G242200 Gossypium raimondii HOM05D000358 ORTHO05D002575 1.8e-06 56.2 49 61.2
TWI74G0563 Tripterygium wilfordii HOM05D003607 ORTHO05D004049 1.8e-06 56.2 51 56.9
TAR369G0960 Trochodendron aralioides HOM05D000358 ORTHO05D002575 1.8e-06 56.2 53 52.8
FvH4_6g27040 Fragaria vesca HOM05D003607 ORTHO05D004049 2.4e-06 55.8 54 55.6
Lsat_1_v5_gn_2_21060 Lactuca sativa HOM05D000358 ORTHO05D002575 2.4e-06 55.8 49 53.1
Manes.09G058896 Manihot esculenta HOM05D000358 ORTHO05D002575 2.4e-06 55.8 53 52.8
DCAR_016925 Daucus carota HOM05D000358 ORTHO05D002575 3.1e-06 55.5 53 49.1
Gohir.A01G207100 Gossypium hirsutum HOM05D003607 ORTHO05D004049 3.1e-06 55.5 53 62.3
Gohir.D01G196500 Gossypium hirsutum HOM05D003607 ORTHO05D004049 3.1e-06 55.5 53 62.3
Gorai.002G240700 Gossypium raimondii HOM05D003607 ORTHO05D004049 3.1e-06 55.5 53 62.3
Solyc11g007080.1 Solanum lycopersicum HOM05D003607 ORTHO05D004049 3.1e-06 55.5 52 55.8
BcaC02g07616 Brassica carinata HOM05D003607 ORTHO05D004049 4.0e-06 55.1 51 56.9
BolC4t28008H Brassica oleracea HOM05D003607 ORTHO05D004049 4.0e-06 55.1 51 56.9
BraA03t11267Z Brassica rapa HOM05D000358 ORTHO05D002575 4.0e-06 55.1 50 48.0
Eucgr.B03892 Eucalyptus grandis HOM05D000358 ORTHO05D002575 4.0e-06 55.1 53 50.9
PGSC0003DMG400019486 Solanum tuberosum HOM05D003607 ORTHO05D004049 4.0e-06 55.1 52 55.8
unitig_748.g8775 Utricularia gibba HOM05D003607 ORTHO05D004049 4.0e-06 55.1 52 59.6
A03p20170 Brassica napus HOM05D000358 ORTHO05D002575 5.3e-06 54.7 50 48.0
Thhalv10010984m.g Eutrema salsugineum HOM05D003607 ORTHO05D004049 5.3e-06 54.7 54 59.3
Aa31LG5G21430 Aethionema arabicum HOM05D003607 ORTHO05D004049 6.9e-06 54.3 58 55.2
Aqoxy2G01376 Aquilegia oxysepala HOM05D000358 ORTHO05D002575 9.0e-06 53.9 60 48.3
HanXRQChr08g0217791 Helianthus annuus HOM05D003607 ORTHO05D004049 9.0e-06 53.9 52 59.6
Lsat_1_v5_gn_8_23940 Lactuca sativa HOM05D003607 ORTHO05D004049 9.0e-06 53.9 53 58.5


User provided reference genes

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