Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G097500 Phaseolus vulgaris HOM05D006114 ORTHO05D007609 1.9e-225 785.4 375 100.0
VMungo0464G2055 Vigna mungo HOM05D006114 ORTHO05D007609 8.4e-213 743.4 378 94.4
Glyma.02G083400 Glycine max HOM05D006114 ORTHO05D007609 1.4e-159 566.6 381 77.2
Lj2g0010896 Lotus japonicus HOM05D006114 ORTHO05D007609 1.9e-156 556.2 384 72.7
Ca_27292_v3 Cicer arietinum L. HOM05D006114 ORTHO05D007609 2.1e-155 552.7 388 70.4
Medtr6g034935 Medicago truncatula HOM05D006114 ORTHO05D007609 6.7e-154 547.7 386 69.4
Lalb_Chr19g0130321 Lupinus albus HOM05D006114 ORTHO05D007609 4.1e-151 538.5 385 69.9
MD05G1021300 Malus domestica HOM05D006114 ORTHO05D007609 1.2e-142 510.4 370 68.6
Prupe.8G025000 Prunus persica HOM05D006114 ORTHO05D007609 1.7e-141 506.5 369 67.5
CANSAT25G1256 Cannabis sativa HOM05D006114 ORTHO05D007609 4.7e-139 498.4 383 65.0
MD10G1022100 Malus domestica HOM05D006114 ORTHO05D007609 1.8e-138 496.5 371 66.3
TAR381G1603 Trochodendron aralioides HOM05D006114 ORTHO05D007609 2.4e-135 486.1 376 64.4
CSS0028797 Camellia sinensis var. sinensis HOM05D006114 ORTHO05D007609 2.3e-133 479.6 384 63.5
TAR625G1556 Trochodendron aralioides HOM05D006114 ORTHO05D007609 2.9e-133 479.2 373 64.1
Ciclev10001576m.g Citrus clementina HOM05D006114 ORTHO05D007609 3.9e-133 478.8 379 63.6
Haze_17740 Corylus avellana HOM05D006114 ORTHO05D007609 1.5e-132 476.9 378 62.7
Dinv41097 Davidia involucrata HOM05D006114 ORTHO05D007609 1.5e-132 476.9 365 64.9
CiPaw.16G014300 Carya illinoinensis HOM05D006114 ORTHO05D007609 1.9e-132 476.5 381 63.5
Cfa018335 Carpinus fangiana HOM05D006114 ORTHO05D007609 2.5e-132 476.1 376 63.0
RcHm_v2.0_Chr6g0276341 Rosa chinensis HOM05D006114 ORTHO05D007609 1.6e-131 473.4 372 64.8
Sed0024386 Sechium edule HOM05D006114 ORTHO05D007609 3.6e-131 472.2 372 62.1
COL.COLO4_24672 Corchorus olitorius HOM05D006114 ORTHO05D007609 6.8e-130 468.0 392 61.2
QL02p024207 Quercus lobata HOM05D006114 ORTHO05D007609 8.9e-130 467.6 385 62.6
Nn1g06119 Nelumbo nucifera HOM05D006114 ORTHO05D007609 2.6e-129 466.1 373 63.3
Hma1.2p1_0616F.1_g190010 Hydrangea macrophylla HOM05D006114 ORTHO05D007609 1.7e-128 463.4 382 63.1
Actinidia15143 Actinidia chinensis HOM05D006114 ORTHO05D007609 2.9e-128 462.6 378 60.3
Lj7A371T45 Lonicera japonica HOM05D006114 ORTHO05D007609 6.4e-128 461.5 376 62.8
Potri.002G069900 Populus trichocarpa HOM05D006114 ORTHO05D007609 1.2e-126 457.2 390 59.7
PGR042G1057 Punica granatum HOM05D006114 ORTHO05D007609 2.0e-126 456.4 388 61.9
PGR122G0006 Punica granatum HOM05D006114 ORTHO05D007609 2.0e-126 456.4 388 61.9
Eucgr.F02716 Eucalyptus grandis HOM05D006114 ORTHO05D007609 3.5e-126 455.7 400 59.8
Gohir.D05G271900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 3.5e-126 455.7 390 59.7
Gorai.009G284900 Gossypium raimondii HOM05D006114 ORTHO05D007609 3.5e-126 455.7 390 59.7
TWI32G1226 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 4.6e-126 455.3 378 61.1
TWI34G0188 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 4.6e-126 455.3 379 61.5
Gohir.A05G269900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 6.0e-126 454.9 390 59.5
AUR62039242 Chenopodium quinoa HOM05D006114 ORTHO05D007609 1.7e-125 453.4 396 59.3
Duzib116G0820 Durio zibethinus HOM05D006114 ORTHO05D007609 1.7e-125 453.4 396 58.8
Aqoxy5G02132 Aquilegia oxysepala HOM05D006114 ORTHO05D007609 2.3e-125 453.0 381 59.6
Manes.02G177800 Manihot esculenta HOM05D006114 ORTHO05D007609 3.0e-125 452.6 408 56.9
Cpa.g.sc21.182 Carica papaya HOM05D006114 ORTHO05D007609 5.0e-125 451.8 383 60.8
Hund26709 Selenicereus undatus HOM05D006114 ORTHO05D000105 6.6e-125 451.4 404 59.4
EL10Ac7g15790 Beta vulgaris HOM05D006114 ORTHO05D007609 1.5e-124 450.3 388 59.5
FAN15G0766 Fragaria x ananassa HOM05D006114 ORTHO05D007609 1.5e-124 450.3 370 62.2
BcaB02g07084 Brassica carinata HOM05D006114 ORTHO05D007609 1.9e-124 449.9 381 61.2
Atru.chr13.2189 Acer truncatum HOM05D006114 ORTHO05D007609 3.3e-124 449.1 378 59.5
Lsat_1_v5_gn_1_8460 Lactuca sativa HOM05D006114 ORTHO05D007609 7.3e-124 448.0 374 61.2
Ah.08g215970 Amaranthus hybridus HOM05D006114 ORTHO05D007609 1.2e-123 447.2 394 59.9
C06p31720 Brassica napus HOM05D006114 ORTHO05D007609 1.2e-123 447.2 379 60.9
BolC6t38302H Brassica oleracea HOM05D006114 ORTHO05D007609 1.2e-123 447.2 379 60.9
BraA07t30466Z Brassica rapa HOM05D006114 ORTHO05D007609 1.2e-123 447.2 379 60.9
Duzib041G0274 Durio zibethinus HOM05D006114 ORTHO05D007609 1.2e-123 447.2 392 58.9
PSO675G2834 Papaver somniferum HOM05D006114 ORTHO05D007609 1.2e-123 447.2 385 58.4
Potri.005G190400 Populus trichocarpa HOM05D006114 ORTHO05D007609 1.2e-123 447.2 383 59.8
PSO541G3056 Papaver somniferum HOM05D006114 ORTHO05D007609 2.1e-123 446.4 390 57.7
A07p28250 Brassica napus HOM05D006114 ORTHO05D007609 2.8e-123 446.0 379 60.7
Rhsim05G0182400 Rhododendron simsii HOM05D006114 ORTHO05D007609 3.6e-123 445.7 381 61.9
Thecc.08G149100 Theobroma cacao HOM05D006114 ORTHO05D007609 6.2e-123 444.9 389 58.6
BcaC08g45501 Brassica carinata HOM05D006114 ORTHO05D007609 8.0e-123 444.5 379 60.4
Cc10_g14550 Coffea canephora HOM05D006114 ORTHO05D007609 3.1e-122 442.6 385 58.2
THA.LOC104812044 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 3.1e-122 442.6 391 57.3
SpUn0346_0010 Schrenkiella parvula HOM05D006114 ORTHO05D007609 8.9e-122 441.0 388 59.0
AL2G37050 Arabidopsis lyrata HOM05D006114 ORTHO05D007609 2.6e-121 439.5 390 58.7
THA.LOC104813707 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 1.3e-120 437.2 386 57.3
BcaB05g25019 Brassica carinata HOM05D006114 ORTHO05D007609 1.7e-120 436.8 374 58.6
Solyc04g071130.1 Solanum lycopersicum HOM05D006114 ORTHO05D007609 1.7e-120 436.8 382 56.8
Sopen04g027070 Solanum pennellii HOM05D006114 ORTHO05D007609 1.7e-120 436.8 382 56.8
PGSC0003DMG400000797 Solanum tuberosum HOM05D006114 ORTHO05D007609 3.7e-120 435.6 382 56.5
Carub.0002s2378 Capsella rubella HOM05D006114 ORTHO05D007609 4.9e-120 435.3 392 57.4
DCAR_010096 Daucus carota HOM05D006114 ORTHO05D007609 4.9e-120 435.3 383 59.5
Thhalv10019824m.g Eutrema salsugineum HOM05D006114 ORTHO05D007609 4.9e-120 435.3 383 58.7
AT1G76920 Arabidopsis thaliana HOM05D006114 ORTHO05D007609 8.3e-120 434.5 390 57.7
Aa31LG4G6950 Aethionema arabicum HOM05D006114 ORTHO05D007609 1.9e-119 433.3 387 58.1
Medtr6g049050 Medicago truncatula HOM05D006114 ORTHO05D007609 2.4e-119 433.0 380 59.5
Nitab4.5_0006608g0010 Nicotiana tabacum HOM05D006114 ORTHO05D007609 2.4e-119 433.0 389 56.3
CAN.G175.3 Capsicum annuum HOM05D006114 ORTHO05D007609 3.5e-118 429.1 387 55.6
Sed0010814 Sechium edule HOM05D006114 ORTHO05D007609 1.3e-117 427.2 376 58.2
Sabra02G0054600 Salix brachista HOM05D006114 ORTHO05D007609 2.3e-117 426.4 364 58.8
Nitab4.5_0000032g0440 Nicotiana tabacum HOM05D006114 ORTHO05D007609 1.2e-115 420.6 383 54.8
FvH4_2g14200 Fragaria vesca HOM05D006114 ORTHO05D007609 5.8e-113 411.8 305 65.6
SalBow7G1400 Salvia bowleyana HOM05D006114 ORTHO05D007609 5.8e-113 411.8 373 56.6
Oeu032982.1 Olea europaea HOM05D006114 ORTHO05D007609 2.7e-110 402.9 388 51.3
Migut.C01010 Erythranthe guttata HOM05D006114 ORTHO05D007609 7.8e-110 401.4 391 52.7
MSTRG.1356 Avicennia marina HOM05D006114 ORTHO05D007609 8.6e-109 397.9 388 52.1
FAN24G0263 Fragaria x ananassa HOM05D006114 ORTHO05D007609 9.6e-108 394.4 293 65.2
HanXRQChr02g0039921 Helianthus annuus HOM05D006114 ORTHO05D007609 2.0e-105 386.7 373 54.7
Lj7A371T46 Lonicera japonica HOM05D006114 ORTHO05D007609 2.9e-104 382.9 375 53.1
MSTRG.22368 Avicennia marina HOM05D006114 ORTHO05D007609 1.1e-103 380.9 389 51.9
unitig_749.g13920 Utricularia gibba HOM05D006114 ORTHO05D007609 3.9e-101 372.5 389 49.9
Peaxi162Scf00263g01414 Petunia axillaris HOM05D006114 ORTHO05D007609 4.4e-97 359.0 284 59.2
HPP92_009302 Vanilla planifolia HOM05D006114 ORTHO05D007609 9.9e-97 357.8 390 51.5
ECA247G0840 Erigeron canadensis HOM05D006114 ORTHO05D007609 1.9e-92 343.6 249 66.3
CARHR070420 Cardamine hirsuta HOM05D006114 ORTHO05D007609 4.8e-91 339.0 310 57.4
MBI17_g34067_MAGBIO Magnolia biondii HOM05D006114 ORTHO05D007609 7.6e-89 331.6 284 60.9
Psat0s3019g0080 Pisum sativum HOM05D006114 ORTHO05D007609 1.7e-88 330.5 214 74.3
Zm00001eb434300 Zea mays HOM05D006114 ORTHO05D007609 7.1e-87 325.1 399 47.1
Zm00001eb076050 Zea mays HOM05D006114 ORTHO05D007609 4.0e-82 309.3 389 46.5
GSVIVG01034899001 Vitis vinifera HOM05D006114 ORTHO05D007609 1.3e-77 294.3 371 45.8
AUR62009796 Chenopodium quinoa HOM05D006114 ORTHO05D007609 2.3e-77 293.5 200 67.5
FAN27G1342 Fragaria x ananassa HOM05D006114 ORTHO05D007609 2.1e-75 287.0 199 67.8
TPR.G36696 Trifolium pratense HOM05D006114 ORTHO05D007609 4.8e-75 285.8 162 79.0
Os04g0686700 Oryza sativa ssp. japonica HOM05D006114 ORTHO05D007609 2.4e-74 283.5 322 48.8
Migut.N03218 Erythranthe guttata HOM05D006114 ORTHO05D007609 2.6e-73 280.0 392 42.1
Oeu046020.2 Olea europaea HOM05D006114 ORTHO05D007609 1.0e-56 224.9 389 37.0
unitig_26.g9904 Utricularia gibba HOM05D006114 ORTHO05D007609 5.3e-50 202.6 255 44.3
SGA_v2.0_scaffold48G17978 Striga asiatica HOM05D006114 ORTHO05D007609 3.5e-49 199.9 141 63.8
SEGI_30218 Sequoiadendron giganteum HOM05D006114 ORTHO05D007609 8.5e-48 195.3 376 33.8
Zm00001eb268540 Zea mays HOM05D006114 ORTHO05D007609 1.2e-41 174.9 185 48.6
unitig_26.g9903 Utricularia gibba HOM05D006114 ORTHO05D007609 8.8e-37 158.7 110 63.6
FAN14G0378 Fragaria x ananassa HOM05D006114 ORTHO05D007609 7.0e-34 149.1 130 62.3
AUR62009795 Chenopodium quinoa HOM05D006114 ORTHO05D007609 9.1e-34 148.7 209 41.1
ATR0772G199 Amborella trichopoda HOM05D006114 ORTHO05D007609 2.2e-32 144.1 187 44.4
AUR62039241 Chenopodium quinoa HOM05D006114 ORTHO05D007609 3.8e-32 143.3 204 41.7
VMungo1383G2819 Vigna mungo HOM05D006114 ORTHO05D007609 2.1e-30 137.5 74 85.1
CDE08G0205 Ceratophyllum demersum HOM05D006114 ORTHO05D007609 1.2e-25 121.7 92 60.9
Zm00001eb182860 Zea mays HOM05D006114 ORTHO05D007609 1.1e-23 115.2 145 42.8
FvH4_3g14282 Fragaria vesca HOM05D006114 ORTHO05D007609 5.6e-23 112.8 101 60.4
Zm00001eb346130 Zea mays HOM05D003599 ORTHO05D004221 5.6e-23 112.8 91 58.2
Zm00001eb243390 Zea mays HOM05D006114 ORTHO05D007609 8.9e-21 105.5 93 54.8
Zm00001eb080990 Zea mays HOM05D006114 ORTHO05D007609 7.8e-17 92.4 75 54.7
Zm00001eb268570 Zea mays HOM05D006114 ORTHO05D007609 2.3e-16 90.9 81 55.6
unitig_899.g15112 Utricularia gibba HOM05D004302 ORTHO05D004939 1.5e-15 88.2 359 29.0
SalBow1G5644 Salvia bowleyana HOM05D004302 ORTHO05D004939 2.8e-14 84.0 358 28.2
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 3.6e-14 83.6 375 25.9
unitig_736.g22264 Utricularia gibba HOM05D004302 ORTHO05D004939 6.2e-14 82.8 360 28.6
CSS0006122 Camellia sinensis var. sinensis HOM05D004302 ORTHO05D004939 8.0e-14 82.4 358 28.5
CiPaw.03G081700 Carya illinoinensis HOM05D004302 ORTHO05D004939 2.3e-13 80.9 356 28.7
COL.COLO4_10644 Corchorus olitorius HOM05D004302 ORTHO05D004939 2.3e-13 80.9 358 27.4
Glyma.08G253600 Glycine max HOM05D004302 ORTHO05D004939 2.3e-13 80.9 358 27.9
Phvul.008G025000 Phaseolus vulgaris HOM05D004302 ORTHO05D004939 2.3e-13 80.9 356 28.1
Solyc02g089310.1 Solanum lycopersicum HOM05D004302 ORTHO05D004939 2.3e-13 80.9 358 27.7
PGSC0003DMG400001472 Solanum tuberosum HOM05D004302 ORTHO05D004939 2.3e-13 80.9 358 27.7
Ca_06955_v3 Cicer arietinum L. HOM05D004302 ORTHO05D004939 3.1e-13 80.5 361 28.3
Manes.02G061000 Manihot esculenta HOM05D004302 ORTHO05D004939 3.1e-13 80.5 356 27.0
Sopen02g034090 Solanum pennellii HOM05D004302 ORTHO05D004939 3.1e-13 80.5 358 27.7
Manes.01G104600 Manihot esculenta HOM05D004302 ORTHO05D004939 5.2e-13 79.7 358 27.7
arahy.Tifrunner.gnm1.ann1.0BPN3L Arachis hypogaea HOM05D000034 ORTHO05D000037 6.8e-13 79.3 58 63.8
Duzib133G0367 Durio zibethinus HOM05D004302 ORTHO05D004939 6.8e-13 79.3 358 27.4
Gohir.D08G061666 Gossypium hirsutum HOM05D004302 ORTHO05D004939 6.8e-13 79.3 358 27.7
Nitab4.5_0001339g0010 Nicotiana tabacum HOM05D004302 ORTHO05D004939 6.8e-13 79.3 358 27.4
Rhsim10G0060200 Rhododendron simsii HOM05D004302 ORTHO05D004939 6.8e-13 79.3 358 27.1
ATR0763G218 Amborella trichopoda HOM05D005977 ORTHO05D007546 8.9e-13 79.0 387 25.8
Gorai.004G063700 Gossypium raimondii HOM05D004302 ORTHO05D004939 8.9e-13 79.0 358 27.7
Nitab4.5_0002978g0090 Nicotiana tabacum HOM05D004302 ORTHO05D004939 8.9e-13 79.0 358 27.4
Oeu032833.1 Olea europaea HOM05D004302 ORTHO05D004939 8.9e-13 79.0 360 28.3
QL02p064995 Quercus lobata HOM05D004302 ORTHO05D004939 8.9e-13 79.0 358 29.1
Zm00001eb268560 Zea mays HOM05D006114 ORTHO05D007609 1.2e-12 78.6 108 41.7
Haze_14364 Corylus avellana HOM05D004302 ORTHO05D004939 1.5e-12 78.2 358 27.7
Duzib138G0864 Durio zibethinus HOM05D004302 ORTHO05D004939 2.0e-12 77.8 358 27.1
Thecc.04G108800 Theobroma cacao HOM05D004302 ORTHO05D004939 2.0e-12 77.8 358 27.1
CANSAT64G2833 Cannabis sativa HOM05D004302 ORTHO05D004939 2.6e-12 77.4 358 27.1
Cfa007709 Carpinus fangiana HOM05D004302 ORTHO05D004939 2.6e-12 77.4 358 27.4
Gohir.A08G052000 Gossypium hirsutum HOM05D004302 ORTHO05D004939 2.6e-12 77.4 358 27.4
SGA_v2.0_scaffold52G19058 Striga asiatica HOM05D004302 ORTHO05D004939 2.6e-12 77.4 358 27.4
Hma1.2p1_2186F.1_g316430 Hydrangea macrophylla HOM05D004302 ORTHO05D004939 3.4e-12 77.0 359 27.0
CAN.G497.49 Capsicum annuum HOM05D004302 ORTHO05D004939 4.4e-12 76.6 358 27.1
DCAR_025461 Daucus carota HOM05D004302 ORTHO05D004939 4.4e-12 76.6 358 27.1
Gohir.D11G166700 Gossypium hirsutum HOM05D004302 ORTHO05D004939 5.8e-12 76.3 358 26.8
Gorai.007G177800 Gossypium raimondii HOM05D004302 ORTHO05D004939 5.8e-12 76.3 358 26.8
Zm00001eb080980 Zea mays HOM05D006114 ORTHO05D007609 9.8e-12 75.5 103 38.8
Dinv34899 Davidia involucrata HOM05D004302 ORTHO05D004939 1.3e-11 75.1 358 27.7
FvH4_6g46160 Fragaria vesca HOM05D004302 ORTHO05D004939 1.7e-11 74.7 358 26.8
FAN14G3160 Fragaria x ananassa HOM05D004302 ORTHO05D004939 1.7e-11 74.7 358 26.8
Dinv33879 Davidia involucrata HOM05D004302 ORTHO05D004939 2.9e-11 73.9 358 27.1
FAN09G3470 Fragaria x ananassa HOM05D004302 ORTHO05D004939 6.4e-11 72.8 358 26.8
Prupe.3G247500 Prunus persica HOM05D004302 ORTHO05D004939 8.3e-11 72.4 357 27.2
FAN02G3051 Fragaria x ananassa HOM05D004302 ORTHO05D004939 1.4e-10 71.6 358 26.8
FAN05G3039 Fragaria x ananassa HOM05D004302 ORTHO05D004939 1.4e-10 71.6 358 26.8
ATR0691G100 Amborella trichopoda HOM05D004302 ORTHO05D004939 3.2e-10 70.5 358 26.0
FvH4_6g34681 Fragaria vesca HOM05D006114 ORTHO05D007609 5.4e-10 69.7 68 55.9
MD09G1076600 Malus domestica HOM05D004302 ORTHO05D004939 5.4e-10 69.7 358 26.5
Psat3g208160 Pisum sativum HOM05D004302 ORTHO05D004939 3.5e-09 67.0 361 25.5
SMO364G0869 Selaginella moellendorffii HOM05D003005 ORTHO05D004563 4.6e-09 66.6 340 25.0
HanXRQChr17g0567861 Helianthus annuus HOM05D004302 ORTHO05D004939 7.8e-09 65.9 367 25.9
Zm00001eb433190 Zea mays HOM05D004302 ORTHO05D004939 1.0e-08 65.5 358 24.6
Os04g0668600 Oryza sativa ssp. japonica HOM05D004302 ORTHO05D004939 1.3e-08 65.1 358 24.9
Pp3c24_8170 Physcomitrium patens HOM05D002809 ORTHO05D004939 1.7e-08 64.7 388 23.2
Aa31LG9G13280 Aethionema arabicum HOM05D007423 ORTHO05D009091 2.5e-07 60.8 322 27.0
FvH4_6g34680 Fragaria vesca HOM05D006114 ORTHO05D007609 3.3e-07 60.5 49 67.3
Sc20g0003450 Simmondsia chinensis HOM05D006114 ORTHO05D007609 3.6e-06 57.0 44 63.6
Peaxi162Scf00020g00221 Petunia axillaris HOM05D004302 ORTHO05D004939 4.7e-06 56.6 314 28.0
SGA_v2.0_scaffold17G07917 Striga asiatica HOM05D006114 ORTHO05D007609 4.7e-06 56.6 126 37.3
Sp2g08010 Schrenkiella parvula HOM05D007423 ORTHO05D009091 8.1e-06 55.8 320 26.2


User provided reference genes

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