Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 0.0e+00 1706.4 1169 100.0
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 1.4e-253 880.6 1182 67.8
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 7.6e-220 768.5 1355 47.5
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 8.4e-102 376.3 1214 49.8
Lj2g0026484 Lotus japonicus HOM05D014873 ORTHO05D015681 2.0e-34 152.5 719 27.3
Psat1g100480 Pisum sativum HOM05D014873 ORTHO05D015681 3.4e-26 125.2 704 26.6
TPR.G25870 Trifolium pratense HOM05D014873 ORTHO05D015681 4.6e-23 114.8 354 31.4
Medtr6g043630 Medicago truncatula HOM05D014873 ORTHO05D015681 3.7e-17 95.1 275 31.3
Medtr6g043620 Medicago truncatula HOM05D014873 ORTHO05D015681 4.6e-15 88.2 252 32.9
arahy.Tifrunner.gnm1.ann1.R835TB Arachis hypogaea HOM05D053442 ORTHO05D010674 3.3e-13 82.0 227 35.2
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 3.3e-13 82.0 224 35.7
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 3.1e-11 75.5 47 78.7
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 2.0e-10 72.8 59 61.0
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 2.0e-10 72.8 46 76.1
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 5.8e-10 71.2 46 73.9
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 7.5e-10 70.9 59 59.3
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 7.5e-10 70.9 48 70.8
THA.LOC104812032 Tarenaya hassleriana HOM05D010491 ORTHO05D010674 9.8e-10 70.5 46 69.6
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 1.3e-09 70.1 46 73.9
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 2.9e-09 68.9 54 63.0
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 4.9e-09 68.2 41 75.6
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 8.3e-09 67.4 40 75.0
BraA07t31765Z Brassica rapa HOM05D010491 ORTHO05D012559 8.3e-09 67.4 54 68.5
Sabra02G0052900 Salix brachista HOM05D015223 ORTHO05D037420 8.3e-09 67.4 67 53.7
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 1.1e-08 67.0 51 62.7
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 1.1e-08 67.0 83 44.6
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 1.4e-08 66.6 46 65.2
BolC6t40120H Brassica oleracea HOM05D010491 ORTHO05D012559 1.4e-08 66.6 46 69.6
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 1.9e-08 66.2 41 75.6
Potri.002G066450 Populus trichocarpa HOM05D015223 ORTHO05D037420 1.9e-08 66.2 53 60.4
BcaC08g45512 Brassica carinata HOM05D010491 ORTHO05D012559 3.2e-08 65.5 40 72.5
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 3.2e-08 65.5 54 64.8
C06p31820 Brassica napus HOM05D010491 ORTHO05D012559 3.2e-08 65.5 40 72.5
C06p50950 Brassica napus HOM05D010491 ORTHO05D012559 3.2e-08 65.5 214 29.4
BolC6t38310H Brassica oleracea HOM05D010491 ORTHO05D012559 3.2e-08 65.5 40 72.5
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 3.2e-08 65.5 54 59.3
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 3.2e-08 65.5 41 75.6
Aa31LG4G6810 Aethionema arabicum HOM05D010491 ORTHO05D012559 4.1e-08 65.1 40 72.5
A07p28380 Brassica napus HOM05D010491 ORTHO05D012559 4.1e-08 65.1 40 72.5
BraA07t30474Z Brassica rapa HOM05D010491 ORTHO05D012559 4.1e-08 65.1 40 72.5
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 4.1e-08 65.1 41 73.2
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 5.4e-08 64.7 47 66.0
FAN15G3692 Fragaria x ananassa HOM05D012764 ORTHO05D017940 5.4e-08 64.7 41 75.6
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 5.4e-08 64.7 41 73.2
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 5.4e-08 64.7 163 31.3
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 5.4e-08 64.7 41 73.2
Carub.0002s2365 Capsella rubella HOM05D010491 ORTHO05D012559 7.1e-08 64.3 38 76.3
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 7.1e-08 64.3 41 68.3
Haze_17782 Corylus avellana HOM05D015223 ORTHO05D010674 9.2e-08 63.9 37 78.4
FvH4_2g13360 Fragaria vesca HOM05D012764 ORTHO05D017940 1.2e-07 63.5 44 63.6
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 1.2e-07 63.5 41 73.2
FAN20G3084 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.2e-07 63.5 41 73.2
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.2e-07 63.5 44 63.6
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 1.2e-07 63.5 190 30.0
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 1.6e-07 63.2 43 69.8
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 2.1e-07 62.8 49 63.3
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 2.1e-07 62.8 37 75.7
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 2.7e-07 62.4 41 65.9
PSO675G1109 Papaver somniferum HOM05D018639 ORTHO05D037265 6.0e-07 61.2 222 27.5
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 6.0e-07 61.2 41 68.3
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 7.8e-07 60.8 41 63.4
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 7.8e-07 60.8 54 57.4
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 1.0e-06 60.5 41 68.3
SEGI_05410 Sequoiadendron giganteum HOM05D027683 ORTHO05D018353 1.0e-06 60.5 136 32.4
Solyc04g071660.3 Solanum lycopersicum HOM05D011323 ORTHO05D010674 1.0e-06 60.5 54 57.4
Sopen04g027650 Solanum pennellii HOM05D011323 ORTHO05D010674 1.0e-06 60.5 54 57.4
AT1G76740 Arabidopsis thaliana HOM05D010491 ORTHO05D012559 1.3e-06 60.1 42 76.2
PSO541G1500 Papaver somniferum HOM05D018639 ORTHO05D037265 1.3e-06 60.1 46 63.0
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 1.3e-06 60.1 38 71.1
TAR628G0624 Trochodendron aralioides HOM05D013130 ORTHO05D010674 1.3e-06 60.1 47 61.7
Atru.chr13.2071 Acer truncatum HOM05D036810 ORTHO05D030759 1.7e-06 59.7 41 65.9
ECA247G3667 Erigeron canadensis HOM05D011323 ORTHO05D010674 1.7e-06 59.7 53 52.8
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 1.7e-06 59.7 233 26.6
PSO017G4482 Papaver somniferum HOM05D018639 ORTHO05D037265 1.7e-06 59.7 222 27.5
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 3.0e-06 58.9 54 57.4
SalBow7G1875 Salvia bowleyana HOM05D027784 ORTHO05D010674 3.9e-06 58.5 41 65.9
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 5.1e-06 58.2 40 67.5
Migut.C00977 Erythranthe guttata HOM05D027784 ORTHO05D010674 6.6e-06 57.8 41 63.4
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 6.6e-06 57.8 43 62.8
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 8.6e-06 57.4 57 52.6
Potri.005G194350 Populus trichocarpa HOM05D015223 ORTHO05D037420 8.6e-06 57.4 68 48.5


User provided reference genes

Program Settings