Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 6.1e-184 647.9 411 100.0
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 9.5e-177 624.0 411 95.4
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 9.5e-177 624.0 411 95.6
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 2.4e-172 609.4 406 95.8
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 2.8e-168 595.9 407 93.4
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 2.2e-165 586.3 416 90.1
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 3.1e-159 565.8 408 79.9
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 7.6e-158 561.2 406 79.3
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 8.4e-157 557.8 399 89.5
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 1.1e-156 557.4 410 77.8
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 9.2e-156 554.3 410 78.3
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 3.5e-155 552.4 411 86.1
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 3.9e-154 548.9 406 77.3
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 3.9e-154 548.9 411 74.2
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 1.5e-153 547.0 399 84.7
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 1.9e-153 546.6 407 87.2
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 1.9e-153 546.6 407 87.2
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 5.6e-153 545.0 411 85.9
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 9.6e-153 544.3 411 87.1
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 3.1e-151 539.3 411 85.6
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 3.1e-151 539.3 411 85.2
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 6.9e-151 538.1 399 87.2
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 9.0e-151 537.7 411 85.2
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 2.0e-150 536.6 410 86.1
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 2.6e-150 536.2 409 82.2
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 3.4e-150 535.8 411 86.4
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 4.4e-150 535.4 411 86.4
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 4.4e-150 535.4 411 85.6
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 9.9e-150 534.3 411 86.1
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 1.3e-149 533.9 407 78.4
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.3e-149 533.9 409 76.8
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 1.3e-149 533.9 407 87.0
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 1.7e-149 533.5 401 85.3
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 8.4e-149 531.2 405 85.9
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.4e-148 529.6 411 85.6
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 3.2e-148 529.3 411 85.2
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 3.2e-148 529.3 411 84.9
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 4.2e-148 528.9 406 84.5
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 1.2e-147 527.3 412 78.4
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 1.2e-147 527.3 412 78.4
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 2.1e-147 526.6 412 78.4
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 2.7e-147 526.2 396 86.4
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 6.0e-147 525.0 411 84.7
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 3.9e-146 522.3 424 69.6
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 5.1e-146 521.9 403 82.9
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 5.1e-146 521.9 397 84.6
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 1.1e-145 520.8 406 82.0
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.9e-145 520.0 411 83.2
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 7.3e-145 518.1 412 80.6
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 7.3e-145 518.1 403 83.1
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 7.3e-145 518.1 404 77.5
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 9.6e-145 517.7 411 82.7
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 2.8e-144 516.2 411 70.8
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 2.4e-143 513.1 408 77.5
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 2.4e-143 513.1 396 84.6
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 3.1e-143 512.7 412 83.0
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 1.7e-141 506.9 414 82.4
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 4.9e-141 505.4 409 80.7
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 6.4e-141 505.0 422 78.9
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 3.2e-140 502.7 415 79.0
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 4.2e-140 502.3 431 69.8
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 5.4e-140 501.9 399 74.4
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 1.6e-139 500.4 406 75.4
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.1e-139 500.0 431 69.6
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 2.1e-139 500.0 411 76.4
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 6.0e-139 498.4 411 82.7
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 6.0e-139 498.4 411 81.8
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 1.0e-138 497.7 411 82.2
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 1.8e-138 496.9 409 80.7
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 3.0e-138 496.1 413 71.4
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 3.0e-138 496.1 411 82.5
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 1.1e-137 494.2 394 84.0
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 1.3e-136 490.7 400 74.5
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.3e-136 490.7 412 73.3
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.6e-136 490.3 412 73.1
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.7e-136 489.2 412 72.8
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 6.2e-136 488.4 402 80.8
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.4e-135 487.3 412 68.4
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 4.9e-133 478.8 404 66.6
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 1.4e-132 477.2 389 74.8
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 4.2e-132 475.7 413 70.0
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 4.2e-132 475.7 399 81.7
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 4.2e-132 475.7 411 70.6
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 6.0e-131 471.9 359 86.4
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 2.3e-130 469.9 390 77.9
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 3.0e-130 469.5 405 75.8
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 3.0e-130 469.5 534 62.7
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 3.9e-130 469.2 392 77.3
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 3.9e-130 469.2 409 77.5
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 5.1e-130 468.8 393 77.6
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 5.1e-130 468.8 392 77.0
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 8.7e-130 468.0 388 78.9
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 1.1e-129 467.6 392 77.0
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 1.1e-129 467.6 392 77.0
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 1.1e-129 467.6 392 77.0
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.9e-129 466.8 390 79.0
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 2.8e-128 463.0 391 76.7
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 3.7e-128 462.6 436 66.5
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 6.2e-128 461.8 392 76.5
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 6.2e-128 461.8 392 76.5
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 2.4e-127 459.9 406 70.4
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 5.3e-127 458.8 390 76.9
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 6.9e-127 458.4 517 62.1
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 9.0e-127 458.0 396 70.2
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.1e-124 451.1 406 75.6
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 1.2e-123 447.6 426 64.6
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 3.6e-115 419.5 393 58.3
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 2.3e-114 416.8 389 72.2
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 5.1e-114 415.6 406 59.4
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 9.1e-111 404.8 396 65.7
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 2.2e-109 400.2 391 67.8
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 3.8e-109 399.4 426 58.2
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 1.1e-108 397.9 399 58.4
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 4.2e-108 396.0 408 55.1
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 9.4e-108 394.8 424 55.9
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 7.9e-107 391.7 403 58.1
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 3.0e-106 389.8 391 65.5
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 5.1e-106 389.0 404 57.4
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 5.1e-106 389.0 404 57.4
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 1.3e-104 384.4 404 57.2
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 1.4e-103 380.9 433 53.8
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 1.4e-103 380.9 383 58.7
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 1.5e-102 377.5 314 85.7
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 1.3e-101 374.4 390 55.6
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 3.2e-100 369.8 410 54.4
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 5.5e-100 369.0 445 47.4
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 1.8e-98 364.0 335 66.6
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 6.7e-98 362.1 298 80.2
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 1.3e-93 347.8 404 52.0
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 8.3e-88 328.6 305 70.5
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 9.1e-87 325.1 387 50.6
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 2.2e-80 303.9 386 46.4
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 8.3e-80 302.0 366 53.3
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 5.4e-79 299.3 197 72.6
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 3.3e-76 290.0 388 43.8
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 1.6e-70 271.2 416 46.2
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 2.7e-70 270.4 254 63.8
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 4.6e-70 269.6 293 75.1
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 1.2e-65 255.0 401 42.1
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 1.9e-63 247.7 266 57.1
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 2.0e-62 244.2 194 62.4
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 2.7e-62 243.8 266 56.8
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 1.2e-59 235.0 378 48.4
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.4e-50 204.9 103 91.3
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 1.1e-47 195.3 299 39.8
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 5.4e-47 193.0 103 85.4
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 3.5e-46 190.3 220 48.6
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 6.0e-46 189.5 120 77.5
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 7.8e-46 189.1 302 39.4
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 5.8e-41 172.9 88 88.6
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 8.7e-37 159.1 385 35.3
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 4.0e-34 150.2 104 66.3
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 1.5e-33 148.3 185 45.9
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 1.9e-31 141.4 146 56.2
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 7.9e-30 136.0 95 68.4
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 5.1e-29 133.3 102 64.7
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 4.3e-28 130.2 84 73.8
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 3.6e-27 127.1 81 74.1
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.8e-26 124.8 299 38.5
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 1.8e-26 124.8 74 77.0
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 6.4e-24 116.3 57 86.0
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 1.2e-22 112.1 77 67.5
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 3.7e-19 100.5 67 67.2
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 6.2e-19 99.8 49 83.7
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 2.0e-17 94.7 63 69.8
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 1.3e-16 92.0 44 93.2
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 2.2e-16 91.3 43 95.3
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.2e-14 85.5 45 82.2
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 2.7e-14 84.3 120 59.2
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 4.6e-14 83.6 43 86.0
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 7.9e-14 82.8 45 82.2
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 1.8e-13 81.6 164 31.7
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 1.3e-11 75.5 42 78.6
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 1.3e-11 75.5 42 78.6
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 2.1e-11 74.7 83 45.8
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 2.1e-11 74.7 103 43.7
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 1.1e-10 72.4 46 63.0
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 1.8e-10 71.6 38 81.6
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 2.0e-09 68.2 40 75.0
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 4.2e-07 60.5 52 55.8
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 2.1e-06 58.2 69 43.5
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 3.5e-06 57.4 47 51.1


User provided reference genes

Program Settings