Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 2305.4 1170 100.0
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 2026.5 1166 89.1
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1904.8 1169 83.7
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1886.7 1201 81.3
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1880.5 1212 80.9
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1872.8 1212 80.6
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1865.9 1178 81.8
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1860.5 1201 81.1
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1857.0 1168 81.8
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1857.0 1177 81.5
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1854.0 1200 80.8
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1843.9 1172 81.2
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1837.0 1175 80.9
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1836.2 1173 81.2
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1806.6 1172 80.1
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1804.3 1173 79.6
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1803.9 1173 80.1
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1803.1 1172 79.9
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1797.7 1174 79.2
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1789.6 1235 76.8
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1785.0 1172 78.9
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1784.2 1173 79.5
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1782.3 1173 78.8
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1779.6 1178 78.4
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1775.4 1183 78.3
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1769.6 1173 78.2
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1766.9 1173 77.7
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1766.9 1173 78.8
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1765.0 1172 78.6
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1763.4 1175 78.4
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1763.0 1183 78.4
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1762.7 1174 78.3
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1762.3 1175 78.3
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1756.5 1173 78.1
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1755.0 1173 77.2
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1752.6 1174 76.7
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1751.5 1173 77.0
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1744.2 1217 76.2
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1741.5 1221 75.8
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1740.7 1221 75.8
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1737.2 1167 76.7
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1735.7 1173 77.1
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1734.9 1221 75.8
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1733.8 1174 76.7
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1730.3 1174 77.1
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1728.0 1227 74.1
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1723.8 1179 76.2
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1719.1 1168 77.1
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1718.0 1168 77.3
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1716.8 1077 82.5
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1716.0 1172 76.1
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1715.7 1175 75.6
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1714.5 1176 76.3
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1713.7 1168 77.0
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1708.0 1170 75.6
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1705.3 1230 73.6
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1698.7 1172 75.2
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1696.4 1170 74.8
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1694.1 1172 74.7
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1680.2 1212 73.7
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1676.8 1172 74.8
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1676.8 1209 73.5
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1676.4 1172 74.8
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1675.6 1177 73.9
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1672.9 1170 73.3
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1667.9 1175 74.8
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1666.0 1168 74.3
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1665.2 1173 74.1
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1662.5 1159 74.8
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1656.3 1172 73.5
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1654.4 1170 74.0
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1654.0 1174 74.0
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1653.6 1173 73.5
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1650.6 1235 71.0
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1648.6 1173 73.4
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1644.0 1176 72.9
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1643.2 1169 73.6
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1642.9 1188 72.8
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1642.5 1176 72.5
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1642.1 1209 71.1
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1642.1 1172 73.4
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1641.7 1174 73.5
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1640.9 1176 73.4
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1640.2 1174 73.6
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1639.0 1236 70.3
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1636.3 1203 72.7
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1635.5 1176 72.7
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1626.3 1176 73.6
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1625.9 1174 74.0
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1624.8 1171 72.2
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1622.4 1177 73.7
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1622.1 1176 72.2
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1619.0 1176 73.8
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1618.6 1176 72.5
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1617.8 1101 76.5
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1615.5 1170 73.2
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1615.5 1177 73.7
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1612.8 1178 71.4
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1612.4 1176 71.9
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1612.0 1175 71.7
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1611.3 1178 72.0
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1606.3 1176 73.1
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1595.5 1168 72.3
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1592.4 1171 72.2
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1590.9 1148 73.4
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1588.9 1174 72.2
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1584.7 1179 72.1
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1581.6 1193 71.0
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1568.1 1176 71.8
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1557.3 1184 70.4
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1540.0 1204 68.8
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1520.8 1149 69.0
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1516.5 1175 68.1
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1513.8 1169 68.8
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1508.4 1170 68.5
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1493.8 1114 71.5
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1490.7 1169 66.7
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1484.5 1169 66.4
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1475.7 801 95.0
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1472.2 973 78.7
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1461.8 947 79.4
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1437.2 1174 66.4
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1426.4 947 77.7
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1377.1 1184 64.3
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1343.2 1032 71.5
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1312.7 946 73.3
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1238.8 956 70.6
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1224.5 887 72.2
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1213.0 980 68.1
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1199.9 1170 57.7
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1176.4 970 67.4
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1156.7 809 75.6
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1109.0 811 72.0
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1100.1 813 72.4
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 2.8e-299 1032.3 1164 53.1
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 1.1e-287 993.8 722 74.0
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 2.3e-277 959.5 1168 47.3
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 5.0e-272 941.8 540 85.7
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 2.5e-271 939.5 1199 46.2
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 6.0e-249 865.1 603 76.5
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 8.3e-243 844.7 714 65.7
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 1.6e-198 697.6 360 95.6
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.6e-188 663.7 432 76.4
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 9.5e-138 495.7 307 78.8
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 7.5e-135 486.1 618 48.5
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 1.7e-131 474.9 309 76.7
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 2.3e-131 474.6 307 76.9
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 3.6e-129 467.2 898 38.5
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.0e-115 422.5 800 35.6
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.2e-113 415.6 283 76.7
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 7.6e-103 379.8 1336 27.9
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 6.0e-92 343.6 227 73.6
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.1e-88 332.8 508 43.1
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 5.7e-82 310.5 246 70.3
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 3.7e-81 307.8 201 73.6
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 6.5e-78 297.0 182 79.7
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 5.1e-75 287.3 207 72.0
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 4.2e-69 267.7 256 60.9
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 2.2e-65 255.4 184 72.8
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 4.8e-65 254.2 144 84.0
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 2.0e-63 248.8 188 67.6
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 2.6e-63 248.4 181 70.2
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 1.9e-53 215.7 179 64.8
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 4.4e-50 204.5 130 80.0
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 3.1e-48 198.4 118 87.3
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 9.4e-45 186.8 139 68.3
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 5.5e-37 161.0 92 90.2
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 2.9e-30 138.7 90 78.9
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 2.9e-30 138.7 95 73.7
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 2.9e-30 138.7 95 73.7
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 1.6e-20 106.3 83 69.9
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.6e-20 106.3 78 66.7
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 2.2e-17 95.9 59 78.0
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 7.0e-16 90.9 69 62.3
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 1.3e-14 86.7 48 70.8
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.5e-13 83.2 103 48.5
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 4.0e-11 75.1 81 45.7
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 4.6e-07 61.6 64 50.0


User provided reference genes

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