Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 9.0e-110 400.2 194 100.0
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 3.8e-100 368.2 194 90.7
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 1.5e-88 329.7 195 84.1
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 1.2e-77 293.5 192 71.9
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 5.0e-76 288.1 194 70.1
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 6.5e-76 287.7 191 73.3
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 2.0e-72 276.2 194 70.1
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 3.3e-72 275.4 194 68.6
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 4.4e-72 275.0 194 69.6
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 2.8e-71 272.3 194 67.5
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 4.1e-70 268.5 192 68.8
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 1.7e-68 263.1 186 66.1
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 1.5e-67 260.0 188 67.0
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 1.9e-67 259.6 191 63.4
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 2.5e-67 259.2 184 66.3
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 2.5e-67 259.2 182 68.7
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 2.5e-67 259.2 191 61.3
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 2.5e-67 259.2 192 64.1
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 5.5e-67 258.1 160 71.9
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 5.5e-67 258.1 184 65.8
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 1.2e-66 256.9 183 66.1
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 1.6e-66 256.5 183 64.5
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 2.1e-66 256.1 188 66.0
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 2.7e-66 255.8 187 63.6
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 2.7e-66 255.8 192 62.5
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 6.1e-66 254.6 184 66.3
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 8.0e-66 254.2 194 62.4
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 1.0e-65 253.8 194 63.4
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 1.0e-65 253.8 192 63.5
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 1.8e-65 253.1 169 66.3
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 2.3e-65 252.7 190 64.2
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 4.0e-65 251.9 188 63.8
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 4.0e-65 251.9 184 64.7
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 6.8e-65 251.1 183 61.2
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 8.8e-65 250.8 186 64.5
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 1.2e-64 250.4 182 62.6
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.5e-64 250.0 194 62.9
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 2.0e-64 249.6 186 62.4
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 2.6e-64 249.2 195 60.5
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 3.4e-64 248.8 191 59.2
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 3.4e-64 248.8 199 63.3
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 5.7e-64 248.1 171 66.1
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 9.8e-64 247.3 192 59.9
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 9.8e-64 247.3 188 61.2
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.7e-63 246.5 184 60.9
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 2.2e-63 246.1 183 64.5
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 2.2e-63 246.1 190 60.5
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 2.2e-63 246.1 182 64.3
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 2.8e-63 245.7 183 64.5
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 2.8e-63 245.7 186 60.8
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 3.7e-63 245.4 191 61.8
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 4.8e-63 245.0 169 65.1
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 6.3e-63 244.6 182 62.1
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 6.3e-63 244.6 182 62.1
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 8.3e-63 244.2 182 62.1
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 8.3e-63 244.2 195 55.9
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 8.3e-63 244.2 182 62.6
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 8.3e-63 244.2 190 58.9
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 8.3e-63 244.2 182 62.6
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 2.4e-62 242.7 194 58.8
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 2.4e-62 242.7 167 61.1
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 2.4e-62 242.7 166 64.5
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 3.1e-62 242.3 197 58.4
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 4.1e-62 241.9 193 54.9
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 5.4e-62 241.5 188 60.1
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 5.4e-62 241.5 175 63.4
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 7.0e-62 241.1 183 63.4
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 7.0e-62 241.1 186 59.1
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 9.1e-62 240.7 155 69.7
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 1.2e-61 240.4 183 62.8
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 1.2e-61 240.4 183 62.8
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 1.2e-61 240.4 182 64.3
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 1.2e-61 240.4 188 59.0
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 1.2e-61 240.4 188 59.0
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 2.0e-61 239.6 193 59.1
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 2.0e-61 239.6 182 62.6
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 4.5e-61 238.4 182 61.0
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 7.7e-61 237.7 182 62.1
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 1.0e-60 237.3 182 62.1
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 1.0e-60 237.3 182 62.1
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 1.3e-60 236.9 182 62.1
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 2.9e-60 235.7 182 61.5
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 1.1e-59 233.8 187 59.4
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 3.2e-59 232.3 182 61.0
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 4.2e-59 231.9 182 59.3
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 5.5e-59 231.5 184 57.6
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 7.2e-59 231.1 158 63.3
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 2.1e-58 229.6 182 61.5
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 2.7e-58 229.2 190 56.3
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 4.7e-58 228.4 187 56.7
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 1.8e-57 226.5 191 56.5
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 1.8e-57 226.5 153 62.7
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 1.8e-57 226.5 153 63.4
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 6.8e-57 224.6 157 65.0
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 8.8e-57 224.2 172 57.0
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 1.5e-56 223.4 153 62.1
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 5.7e-56 221.5 152 67.8
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 7.5e-56 221.1 189 56.6
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 7.5e-56 221.1 212 51.9
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 1.3e-55 220.3 190 55.8
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 4.9e-55 218.4 150 62.7
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 1.1e-54 217.2 155 64.5
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 7.0e-54 214.5 181 53.6
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 1.2e-53 213.8 160 61.9
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 1.6e-53 213.4 153 60.8
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 2.7e-53 212.6 202 52.0
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 2.3e-52 209.5 156 59.6
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 2.5e-51 206.1 183 56.8
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 2.8e-50 202.6 160 58.8
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 8.0e-50 201.1 170 57.6
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 6.4e-47 191.4 188 53.2
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 9.5e-43 177.6 150 59.3
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.4e-38 163.7 159 46.5
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.4e-38 163.7 159 46.5
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.1e-35 154.1 179 41.9
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 1.9e-35 153.3 141 54.6
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 2.5e-35 152.9 176 48.9
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 5.6e-35 151.8 123 59.3
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 3.6e-34 149.1 88 73.9
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 6.2e-34 148.3 129 55.8
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 1.1e-30 137.5 169 39.6
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 1.4e-30 137.1 118 55.9
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 3.5e-29 132.5 117 53.0
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 9.5e-27 124.4 71 78.9
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 4.9e-23 112.1 73 67.1
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 2.4e-22 109.8 68 73.5
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 5.4e-22 108.6 71 67.6
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 3.0e-20 102.8 64 76.6
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 5.1e-20 102.1 91 54.9
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 2.1e-18 96.7 86 50.0
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 1.1e-17 94.4 146 33.6
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 5.2e-17 92.0 94 46.8
VMungo1309G1728 Vigna mungo HOM05D005543 ORTHO05D006584 1.7e-15 87.0 54 79.6
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 9.3e-14 81.3 145 26.9
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 3.0e-12 76.3 46 67.4
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 5.1e-12 75.5 144 25.0
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 3.3e-11 72.8 60 58.3
Os11g0167400 Oryza sativa ssp. japonica HOM05D027232 ORTHO05D298405 3.2e-06 56.2 58 43.1
Os03g0204600 Oryza sativa ssp. japonica HOM05D027232 ORTHO05D295510 4.2e-06 55.8 52 48.1


User provided reference genes

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