Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G082000 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 2.2e-38 161.8 80 100.0
Phvul.004G080400 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 3.3e-18 94.7 87 60.9
VMungo0464G2181 Vigna mungo HOM05D006263 ORTHO05D007549 3.3e-18 94.7 87 60.9
Glyma.16G153300 Glycine max HOM05D006263 ORTHO05D007549 1.1e-16 89.7 87 58.6
Lalb_Chr06g0173981 Lupinus albus HOM05D006263 ORTHO05D007549 1.3e-14 82.8 60 66.7
Lj6g0008715 Lotus japonicus HOM05D006263 ORTHO05D007549 2.2e-14 82.0 61 65.6
Psat1g096040 Pisum sativum HOM05D006263 ORTHO05D007549 6.5e-14 80.5 92 51.1
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 1.9e-13 79.0 56 67.9
Medtr6g029470 Medicago truncatula HOM05D006263 ORTHO05D007549 2.5e-13 78.6 61 62.3
COL.COLO4_13602 Corchorus olitorius HOM05D006263 ORTHO05D007549 3.2e-13 78.2 60 60.0
Thecc.05G294200 Theobroma cacao HOM05D006263 ORTHO05D007549 7.2e-13 77.0 60 60.0
Ca_04490_v3 Cicer arietinum L. HOM05D006263 ORTHO05D007549 3.6e-12 74.7 92 48.9
Gohir.D11G269500 Gossypium hirsutum HOM05D006263 ORTHO05D007549 4.7e-12 74.3 60 56.7
Gorai.007G289300 Gossypium raimondii HOM05D006263 ORTHO05D007549 4.7e-12 74.3 60 56.7
Dinv14580 Davidia involucrata HOM05D006263 ORTHO05D007549 6.1e-12 73.9 86 46.5
CiPaw.10G000900 Carya illinoinensis HOM05D006263 ORTHO05D007549 8.0e-12 73.6 59 61.0
GSVIVG01033398001 Vitis vinifera HOM05D006263 ORTHO05D007549 8.0e-12 73.6 61 57.4
Duzib177G1028 Durio zibethinus HOM05D006263 ORTHO05D007549 1.0e-11 73.2 58 58.6
Gohir.A11G259300 Gossypium hirsutum HOM05D006263 ORTHO05D007549 1.0e-11 73.2 60 55.0
Medtr6g029530 Medicago truncatula HOM05D006263 ORTHO05D007549 1.0e-11 73.2 58 58.6
Oeu003888.1 Olea europaea HOM05D006263 ORTHO05D007549 1.4e-11 72.8 59 59.3
Oeu060008.1 Olea europaea HOM05D006263 ORTHO05D007549 1.4e-11 72.8 59 61.0
Prupe.7G003700 Prunus persica HOM05D006263 ORTHO05D007549 1.8e-11 72.4 92 44.6
BcaB08g36696 Brassica carinata HOM05D006263 ORTHO05D007549 2.3e-11 72.0 59 55.9
Ca_04491_v3 Cicer arietinum L. HOM05D006263 ORTHO05D000429 3.0e-11 71.6 58 60.3
AL6G29400 Arabidopsis lyrata HOM05D006263 ORTHO05D007549 4.0e-11 71.2 59 54.2
AT5G18200 Arabidopsis thaliana HOM05D006263 ORTHO05D007549 4.0e-11 71.2 59 54.2
C09p58780 Brassica napus HOM05D006263 ORTHO05D007549 4.0e-11 71.2 59 54.2
BraA10t44195Z Brassica rapa HOM05D006263 ORTHO05D007549 4.0e-11 71.2 59 54.2
Potri.019G034400 Populus trichocarpa HOM05D006263 ORTHO05D007549 4.0e-11 71.2 60 58.3
BcaC04g18720 Brassica carinata HOM05D006263 ORTHO05D007549 5.2e-11 70.9 59 54.2
Psat1g096000 Pisum sativum HOM05D006263 ORTHO05D007549 5.2e-11 70.9 61 52.5
Sabra19G0042300 Salix brachista HOM05D006263 ORTHO05D007549 5.2e-11 70.9 59 59.3
Sabra19G0044500 Salix brachista HOM05D006263 ORTHO05D007549 5.2e-11 70.9 59 59.3
TPR.G34629 Trifolium pratense HOM05D006263 ORTHO05D007549 5.2e-11 70.9 61 54.1
BolC9t58720H Brassica oleracea HOM05D006263 ORTHO05D007549 6.7e-11 70.5 59 54.2
CSS0025413 Camellia sinensis var. sinensis HOM05D006263 ORTHO05D007549 6.7e-11 70.5 60 51.7
Haze_19416 Corylus avellana HOM05D006263 ORTHO05D007549 8.8e-11 70.1 59 59.3
MD12G1003100 Malus domestica HOM05D006263 ORTHO05D007549 8.8e-11 70.1 87 47.1
ClCG05G001960 Citrullus lanatus HOM05D006263 ORTHO05D007549 1.1e-10 69.7 88 42.0
Thhalv10013996m.g Eutrema salsugineum HOM05D006263 ORTHO05D007549 1.1e-10 69.7 59 50.8
Sp6g26120 Schrenkiella parvula HOM05D006263 ORTHO05D007549 1.1e-10 69.7 59 52.5
Aqoxy1G00489 Aquilegia oxysepala HOM05D006263 ORTHO05D007549 1.5e-10 69.3 59 52.5
Cfa016439 Carpinus fangiana HOM05D006263 ORTHO05D007549 1.5e-10 69.3 59 57.6
Manes.09G141600 Manihot esculenta HOM05D006263 ORTHO05D007549 1.5e-10 69.3 60 55.0
THA.LOC104827270 Tarenaya hassleriana HOM05D006263 ORTHO05D007549 1.5e-10 69.3 59 55.9
Carub.0006s1648 Capsella rubella HOM05D006263 ORTHO05D007549 2.0e-10 68.9 59 50.8
QL07p019666 Quercus lobata HOM05D006263 ORTHO05D007549 2.0e-10 68.9 59 55.9
TWI34G1357 Tripterygium wilfordii HOM05D006263 ORTHO05D007549 2.0e-10 68.9 60 53.3
TAR623G0038 Trochodendron aralioides HOM05D006263 ORTHO05D007549 2.0e-10 68.9 88 43.2
MELO3C006156.2 Cucumis melo HOM05D006263 ORTHO05D007549 2.6e-10 68.6 88 42.0
A10p21320 Brassica napus HOM05D006263 ORTHO05D007549 3.3e-10 68.2 59 52.5
AUR62012878 Chenopodium quinoa HOM05D006263 ORTHO05D007549 3.3e-10 68.2 87 43.7
Haze_19445 Corylus avellana HOM05D006263 ORTHO05D007549 3.3e-10 68.2 59 57.6
Atru.chr2.1379 Acer truncatum HOM05D006263 ORTHO05D007549 4.4e-10 67.8 62 50.0
Ah.01g007390 Amaranthus hybridus HOM05D006263 ORTHO05D007549 4.4e-10 67.8 59 54.2
CARHR194860 Cardamine hirsuta HOM05D006263 ORTHO05D007549 4.4e-10 67.8 59 49.2
Ciclev10020896m.g Citrus clementina HOM05D006263 ORTHO05D007549 4.4e-10 67.8 60 51.7
Potri.006G233200 Populus trichocarpa HOM05D006263 ORTHO05D007549 4.4e-10 67.8 60 53.3
Rhsim04G0087300 Rhododendron simsii HOM05D006263 ORTHO05D007549 5.7e-10 67.4 86 41.9
FAN28G1368 Fragaria x ananassa HOM05D006263 ORTHO05D007549 9.7e-10 66.6 87 47.1
RcHm_v2.0_Chr3g0497171 Rosa chinensis HOM05D006263 ORTHO05D007549 9.7e-10 66.6 87 47.1
Aa31LG11G11400 Aethionema arabicum HOM05D006263 ORTHO05D007549 1.3e-09 66.2 59 49.2
CDE02G1162 Ceratophyllum demersum HOM05D006263 ORTHO05D007549 1.3e-09 66.2 59 54.2
AUR62027102 Chenopodium quinoa HOM05D006263 ORTHO05D007549 1.3e-09 66.2 60 53.3
Hund06464 Selenicereus undatus HOM05D006263 ORTHO05D007549 1.3e-09 66.2 88 40.9
Cpa.g.sc51.112 Carica papaya HOM05D006263 ORTHO05D007549 1.7e-09 65.9 59 54.2
FvH4_1g28080 Fragaria vesca HOM05D006263 ORTHO05D007549 1.7e-09 65.9 87 47.1
FAN19G0970 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.7e-09 65.9 87 47.1
FAN26G0246 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.7e-09 65.9 87 47.1
FAN28G0550 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.7e-09 65.9 87 47.1
RhsimUnG0048700 Rhododendron simsii HOM05D006263 ORTHO05D007549 1.7e-09 65.9 55 54.5
TAR369G0989 Trochodendron aralioides HOM05D006263 ORTHO05D007549 1.7e-09 65.9 58 51.7
CANSAT78G2484 Cannabis sativa HOM05D006263 ORTHO05D007549 2.2e-09 65.5 60 51.7
FAN23G2537 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.2e-09 65.5 87 46.0
Cc06_g22910 Coffea canephora HOM05D006263 ORTHO05D007549 2.8e-09 65.1 60 51.7
Hma1.2p1_0376F.1_g139140 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 2.8e-09 65.1 88 40.9
Hma1.2p1_0376F.1_g139150 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 2.8e-09 65.1 86 41.9
HanXRQChr01g0024721 Helianthus annuus HOM05D006263 ORTHO05D007549 3.7e-09 64.7 59 52.5
Sopen10g022420 Solanum pennellii HOM05D006263 ORTHO05D007549 3.7e-09 64.7 61 52.5
vmacro09144 Vaccinium macrocarpon HOM05D006263 ORTHO05D007549 3.7e-09 64.7 60 51.7
MSTRG.20649 Avicennia marina HOM05D006263 ORTHO05D007549 4.8e-09 64.3 59 52.5
Solyc10g050850.2 Solanum lycopersicum HOM05D006263 ORTHO05D007549 4.8e-09 64.3 61 52.5
PSO339G1401 Papaver somniferum HOM05D006263 ORTHO05D007549 8.2e-09 63.5 86 41.9
PSO384G1918 Papaver somniferum HOM05D006263 ORTHO05D007549 8.2e-09 63.5 86 41.9
PGSC0003DMG400008259 Solanum tuberosum HOM05D006263 ORTHO05D007549 8.2e-09 63.5 61 52.5
Nn7g35844 Nelumbo nucifera HOM05D006263 ORTHO05D007549 1.4e-08 62.8 59 49.2
CAN.G216.5 Capsicum annuum HOM05D006263 ORTHO05D007549 1.8e-08 62.4 61 49.2
Migut.B01469 Erythranthe guttata HOM05D006263 ORTHO05D007549 1.8e-08 62.4 59 50.8
Peaxi162Scf00076g01055 Petunia axillaris HOM05D006263 ORTHO05D007549 1.8e-08 62.4 61 49.2
Lsat_1_v5_gn_1_59641 Lactuca sativa HOM05D006263 ORTHO05D007549 2.4e-08 62.0 59 50.8
Eucgr.K02258 Eucalyptus grandis HOM05D006263 ORTHO05D007549 3.1e-08 61.6 59 50.8
Eucgr.L01413 Eucalyptus grandis HOM05D006263 ORTHO05D007549 3.1e-08 61.6 59 50.8
MBI11_g31289_MAGBIO Magnolia biondii HOM05D006263 ORTHO05D007549 4.1e-08 61.2 58 48.3
PGR042G1093 Punica granatum HOM05D006263 ORTHO05D007549 5.3e-08 60.8 60 48.3
HPP92_015639 Vanilla planifolia HOM05D006263 ORTHO05D007549 5.3e-08 60.8 59 49.2
EL10Ac9g22064 Beta vulgaris HOM05D006263 ORTHO05D007549 7.0e-08 60.5 90 37.8
Actinidia17306 Actinidia chinensis HOM05D000412 ORTHO05D000429 9.1e-08 60.1 36 77.8
ATR0697G038 Amborella trichopoda HOM05D006263 ORTHO05D007549 9.1e-08 60.1 89 43.8
Nitab4.5_0002825g0060 Nicotiana tabacum HOM05D006263 ORTHO05D007549 9.1e-08 60.1 60 51.7
DCAR_013689 Daucus carota HOM05D006263 ORTHO05D007549 1.2e-07 59.7 60 46.7
Zm00001eb301000 Zea mays HOM05D006263 ORTHO05D007549 2.0e-07 58.9 59 44.1
ECA285G0004 Erigeron canadensis HOM05D006263 ORTHO05D007549 2.7e-07 58.5 59 45.8
Lj2A357T95 Lonicera japonica HOM05D006263 ORTHO05D007549 2.7e-07 58.5 60 46.7
Nitab4.5_0000001g0100 Nicotiana tabacum HOM05D006263 ORTHO05D007549 2.7e-07 58.5 60 50.0
Sc18g0007080 Simmondsia chinensis HOM05D006263 ORTHO05D007549 3.5e-07 58.2 61 45.9
SGA_v2.0_scaffold145G36025 Striga asiatica HOM05D006263 ORTHO05D007549 7.7e-07 57.0 59 45.8
SalBow5G0264 Salvia bowleyana HOM05D006263 ORTHO05D007549 1.3e-06 56.2 81 38.3
Os07g0171200 Oryza sativa ssp. japonica HOM05D006263 ORTHO05D007549 2.9e-06 55.1 58 44.8


User provided reference genes

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