Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G075600 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 7.3e-245 850.1 431 100.0
VMungo0464G0131 Vigna mungo HOM05D003265 ORTHO05D003819 8.1e-119 431.4 480 55.4
Lj1g0005050 Lotus japonicus HOM05D003265 ORTHO05D003819 6.2e-34 149.4 144 61.1
GSVIVG01016342001 Vitis vinifera HOM05D003265 ORTHO05D003819 8.1e-26 122.5 130 54.6
Cpa.g.sc53.18 Carica papaya HOM05D003265 ORTHO05D003819 1.5e-24 118.2 140 47.1
CiPaw.01G276700 Carya illinoinensis HOM05D003265 ORTHO05D003819 2.0e-24 117.9 148 47.3
QL08p056892 Quercus lobata HOM05D003265 ORTHO05D003819 2.6e-24 117.5 144 47.9
Haze_16937 Corylus avellana HOM05D003265 ORTHO05D003819 8.3e-23 112.5 144 47.2
FAN06G2521 Fragaria x ananassa HOM05D003265 ORTHO05D003819 1.4e-22 111.7 198 36.4
Prupe.2G219100 Prunus persica HOM05D003265 ORTHO05D003819 2.4e-22 110.9 132 44.7
FAN10G1642 Fragaria x ananassa HOM05D003265 ORTHO05D003819 3.2e-22 110.5 200 38.0
FvH4_7g20180 Fragaria vesca HOM05D003265 ORTHO05D003819 4.1e-22 110.2 198 35.9
FAN03G0618 Fragaria x ananassa HOM05D003265 ORTHO05D003819 7.1e-22 109.4 198 35.9
FAN06G4411 Fragaria x ananassa HOM05D000122 ORTHO05D003819 7.1e-22 109.4 168 40.5
Lj2g0001742 Lotus japonicus HOM05D003265 ORTHO05D003819 7.1e-22 109.4 101 58.4
ClCG09G020420 Citrullus lanatus HOM05D003265 ORTHO05D003819 1.3e-20 105.1 169 40.2
Sed0014651 Sechium edule HOM05D003265 ORTHO05D003819 1.3e-20 105.1 141 41.8
Manes.10G042100 Manihot esculenta HOM05D003265 ORTHO05D003819 3.0e-20 104.0 178 42.1
TWI63G0250 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 1.5e-19 101.7 140 44.3
Thecc.10G067600 Theobroma cacao HOM05D003265 ORTHO05D003819 2.5e-19 100.9 148 46.6
MD07G1179700 Malus domestica HOM05D003265 ORTHO05D003819 4.3e-19 100.1 124 46.8
COL.COLO4_23753 Corchorus olitorius HOM05D003265 ORTHO05D003819 5.6e-19 99.8 204 38.7
MELO3C025500.2 Cucumis melo HOM05D003265 ORTHO05D003819 4.7e-18 96.7 128 43.0
CsaV3_5G026000 Cucumis sativus L. HOM05D003265 ORTHO05D003819 4.7e-18 96.7 128 43.0
Cfa001593 Carpinus fangiana HOM05D003265 ORTHO05D003819 1.4e-17 95.1 179 40.8
Duzib106G1563 Durio zibethinus HOM05D003265 ORTHO05D003819 1.4e-17 95.1 170 41.2
Gorai.013G024900 Gossypium raimondii HOM05D003265 ORTHO05D003819 3.1e-17 94.0 143 46.9
Potri.008G044500 Populus trichocarpa HOM05D003265 ORTHO05D003819 3.1e-17 94.0 137 43.1
Gohir.A13G021500 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.0e-17 93.6 143 46.9
Potri.010G217000 Populus trichocarpa HOM05D003265 ORTHO05D003819 4.4e-16 90.1 229 34.9
Gohir.D13G022100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 5.8e-16 89.7 143 45.5
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 8.4e-15 85.9 126 42.9
THA.LOC104824221 Tarenaya hassleriana HOM05D003265 ORTHO05D013953 7.1e-14 82.8 153 38.6
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 1.0e-12 79.0 153 39.2
AL4G36200 Arabidopsis lyrata HOM05D013918 ORTHO05D013953 1.3e-12 78.6 341 27.0
HPP92_013898 Vanilla planifolia HOM05D003265 ORTHO05D003819 2.1e-10 71.2 273 29.3
CSS0002755 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 3.6e-10 70.5 138 37.7
Thhalv10017720m.g Eutrema salsugineum HOM05D013918 ORTHO05D013953 3.6e-10 70.5 290 29.7
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 4.7e-10 70.1 183 35.5
C03p25710 Brassica napus HOM05D000297 ORTHO05D013953 4.7e-10 70.1 322 27.0
CSS0006813 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 4.7e-10 70.1 87 41.4
Cc09_g02720 Coffea canephora HOM05D014857 ORTHO05D015078 4.7e-10 70.1 323 29.4
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 4.0e-09 67.0 88 46.6
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 5.2e-09 66.6 61 54.1
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 6.8e-09 66.2 115 39.1
BcaB01g03624 Brassica carinata HOM05D000297 ORTHO05D013953 8.9e-09 65.9 275 28.0
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 8.9e-09 65.9 109 39.4
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 8.9e-09 65.9 78 51.3
ATR1159G095 Amborella trichopoda HOM05D003265 ORTHO05D003819 1.2e-08 65.5 68 51.5
BolC3t14959H Brassica oleracea HOM05D013918 ORTHO05D013953 1.2e-08 65.5 314 25.8
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 1.2e-08 65.5 153 36.6
CSS0047156 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.5e-08 65.1 87 37.9
Lj1A924T53 Lonicera japonica HOM05D003265 ORTHO05D003819 1.5e-08 65.1 146 32.9
Aa31LG1G12330 Aethionema arabicum HOM05D006507 ORTHO05D007296 2.0e-08 64.7 350 27.1
A03p21720 Brassica napus HOM05D013918 ORTHO05D013953 2.0e-08 64.7 301 26.6
CSS0028328 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 2.0e-08 64.7 87 40.2
CDE04G0439 Ceratophyllum demersum HOM05D000106 ORTHO05D003819 2.6e-08 64.3 105 42.9
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 4.4e-08 63.5 73 49.3
CDE07G1131 Ceratophyllum demersum HOM05D003265 ORTHO05D003819 4.4e-08 63.5 74 48.6
Cc06_g03550 Coffea canephora HOM05D003265 ORTHO05D003819 4.4e-08 63.5 150 36.0
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 4.4e-08 63.5 73 50.7
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 5.8e-08 63.2 97 42.3
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 5.8e-08 63.2 97 42.3
CSS0009096 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 5.8e-08 63.2 87 39.1
CSS0011554 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 5.8e-08 63.2 87 39.1
CSS0013290 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 5.8e-08 63.2 87 39.1
CSS0047270 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 5.8e-08 63.2 87 39.1
Zm00001eb105840 Zea mays HOM05D003265 ORTHO05D003819 5.8e-08 63.2 66 54.5
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 7.6e-08 62.8 101 35.6
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 9.9e-08 62.4 52 61.5
BcaB01g00290 Brassica carinata HOM05D003265 ORTHO05D003819 1.3e-07 62.0 97 42.3
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 1.3e-07 62.0 81 49.4
A09p46340 Brassica napus HOM05D003265 ORTHO05D003819 1.7e-07 61.6 97 41.2
Glyma.03G177900 Glycine max HOM05D003265 ORTHO05D003819 1.7e-07 61.6 143 33.6
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 1.7e-07 61.6 256 28.1
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 1.7e-07 61.6 69 52.2
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 1.7e-07 61.6 122 37.7
Lalb_Chr19g0129491 Lupinus albus HOM05D003265 ORTHO05D003819 2.2e-07 61.2 62 53.2
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 2.9e-07 60.8 60 56.7
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 2.9e-07 60.8 56 57.1
Zm00001eb322540 Zea mays HOM05D003265 ORTHO05D003819 2.9e-07 60.8 65 52.3
Actinidia38248 Actinidia chinensis HOM05D003265 ORTHO05D003819 3.8e-07 60.5 44 61.4
C08p28530 Brassica napus HOM05D003265 ORTHO05D003819 3.8e-07 60.5 95 41.1
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 3.8e-07 60.5 74 44.6
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 3.8e-07 60.5 137 33.6
HanXRQChr01g0027471 Helianthus annuus HOM05D003265 ORTHO05D003819 3.8e-07 60.5 108 41.7
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 3.8e-07 60.5 120 38.3
SalBow4G0859 Salvia bowleyana HOM05D003265 ORTHO05D003819 3.8e-07 60.5 61 57.4
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 4.9e-07 60.1 120 35.8
Glyma.19G178700 Glycine max HOM05D003265 ORTHO05D003819 4.9e-07 60.1 142 32.4
Oeu026065.2 Olea europaea HOM05D003265 ORTHO05D003819 4.9e-07 60.1 60 56.7
PSO339G3745 Papaver somniferum HOM05D003265 ORTHO05D003819 4.9e-07 60.1 81 42.0
Phvul.001G174800 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 4.9e-07 60.1 78 47.4
PGSC0003DMG400002154 Solanum tuberosum HOM05D014857 ORTHO05D015078 4.9e-07 60.1 387 23.8
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 4.9e-07 60.1 56 57.1
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 6.4e-07 59.7 71 49.3
Thhalv10010259m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 6.4e-07 59.7 145 35.2
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 6.4e-07 59.7 65 50.8
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 6.4e-07 59.7 65 50.8
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 6.4e-07 59.7 67 49.3
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 8.4e-07 59.3 350 26.0
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 8.4e-07 59.3 136 34.6
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 8.4e-07 59.3 98 42.9
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 8.4e-07 59.3 65 50.8
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 8.4e-07 59.3 80 51.2
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 8.4e-07 59.3 72 51.4
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 1.1e-06 58.9 132 33.3
Aa31LG10G8510 Aethionema arabicum HOM05D003265 ORTHO05D003819 1.1e-06 58.9 116 35.3
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 1.1e-06 58.9 156 32.7
Sabra08G0030800 Salix brachista HOM05D003265 ORTHO05D003819 1.1e-06 58.9 224 29.9
vmacro07090 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 1.1e-06 58.9 87 36.8
PSO384G1633 Papaver somniferum HOM05D003265 ORTHO05D003819 1.4e-06 58.5 81 40.7
ClCG10G020560 Citrullus lanatus HOM05D003265 ORTHO05D003819 1.9e-06 58.2 98 37.8
arahy.Tifrunner.gnm1.ann1.H355B7 Arachis hypogaea HOM05D003265 ORTHO05D003819 2.4e-06 57.8 44 63.6
MSTRG.10296 Avicennia marina HOM05D003265 ORTHO05D003819 2.4e-06 57.8 144 34.0
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 2.4e-06 57.8 199 32.2
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 2.4e-06 57.8 130 33.1
ECA246G0591 Erigeron canadensis HOM05D014857 ORTHO05D015078 2.4e-06 57.8 271 27.7
ECA246G3041 Erigeron canadensis HOM05D003265 ORTHO05D003819 2.4e-06 57.8 35 74.3
Oeu035141.2 Olea europaea HOM05D003265 ORTHO05D003819 2.4e-06 57.8 57 56.1
Rhsim03G0122700 Rhododendron simsii HOM05D003265 ORTHO05D003819 2.4e-06 57.8 87 34.5
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 2.4e-06 57.8 195 32.8
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 3.2e-06 57.4 68 45.6
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 3.2e-06 57.4 118 36.4
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 3.2e-06 57.4 126 38.1
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 3.2e-06 57.4 117 37.6
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 4.2e-06 57.0 100 35.0
BraA09t40099Z Brassica rapa HOM05D003265 ORTHO05D003819 4.2e-06 57.0 98 40.8
Duzib106G1383 Durio zibethinus HOM05D003265 ORTHO05D003819 4.2e-06 57.0 68 48.5
BraA03t11406Z Brassica rapa HOM05D000297 ORTHO05D013953 5.4e-06 56.6 308 26.3
HanXRQChr09g0246531 Helianthus annuus HOM05D014857 ORTHO05D015078 5.4e-06 56.6 335 26.0
Oeu026844.1 Olea europaea HOM05D003265 ORTHO05D003819 5.4e-06 56.6 109 37.6
Actinidia05272 Actinidia chinensis HOM05D003265 ORTHO05D003819 7.1e-06 56.2 45 55.6
ECA248G3421 Erigeron canadensis HOM05D002706 ORTHO05D003253 7.1e-06 56.2 68 48.5
Medtr1g066870 Medicago truncatula HOM05D003265 ORTHO05D003819 7.1e-06 56.2 111 39.6
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 7.1e-06 56.2 73 47.9
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 9.3e-06 55.8 187 32.1
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 9.3e-06 55.8 306 26.5
Hma1.2p1_0111F.1_g053890 Hydrangea macrophylla HOM05D003265 ORTHO05D003819 9.3e-06 55.8 60 48.3
Sp5g09010 Schrenkiella parvula HOM05D003265 ORTHO05D003819 9.3e-06 55.8 97 39.2
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 9.3e-06 55.8 61 49.2


User provided reference genes

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