Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 1.6e-197 692.6 345 100.0
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 8.3e-175 617.1 348 87.4
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 6.8e-169 597.4 345 87.2
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 4.1e-166 588.2 350 83.4
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 2.7e-165 585.5 348 81.6
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 4.4e-160 568.2 349 82.2
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 1.7e-159 566.2 349 78.8
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 3.8e-159 565.1 350 80.0
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 2.1e-154 549.3 347 79.3
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 1.9e-147 526.2 345 76.5
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 3.1e-145 518.8 350 73.7
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 1.3e-143 513.5 347 73.5
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 2.9e-143 512.3 347 73.5
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 7.1e-142 507.7 347 73.5
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 1.2e-141 506.9 345 73.0
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.3e-140 502.7 347 71.5
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 8.7e-140 500.7 347 71.2
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 2.5e-139 499.2 347 72.0
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 1.6e-138 496.5 348 72.7
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.8e-138 495.0 346 69.7
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.8e-137 493.0 346 69.4
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.8e-137 493.0 343 71.7
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 2.4e-137 492.7 346 70.8
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.2e-136 490.3 348 71.3
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.4e-136 488.8 343 70.3
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 7.6e-136 487.6 347 72.3
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 1.3e-135 486.9 345 70.7
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.2e-135 486.1 346 68.8
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.2e-135 486.1 359 68.8
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 2.9e-135 485.7 349 70.5
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 3.8e-135 485.3 347 70.3
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.1e-134 483.8 346 70.5
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.4e-134 483.4 345 70.7
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 1.9e-134 483.0 348 71.3
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 7.1e-134 481.1 347 69.2
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 4.6e-133 478.4 348 70.4
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 6.0e-133 478.0 344 69.5
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 1.8e-132 476.5 345 68.7
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 5.1e-132 474.9 346 67.6
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 6.7e-132 474.6 347 69.5
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 8.7e-132 474.2 340 70.6
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.5e-131 473.4 341 70.4
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.5e-131 473.4 349 67.9
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 7.4e-131 471.1 341 70.1
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.1e-130 469.5 339 69.9
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 6.3e-130 468.0 292 82.9
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.3e-130 468.0 351 68.9
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.4e-129 466.1 347 66.9
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 2.4e-129 466.1 346 67.1
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.4e-129 466.1 350 67.7
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 3.1e-129 465.7 346 67.1
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 3.1e-129 465.7 344 67.2
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 6.9e-129 464.5 350 65.7
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 9.0e-129 464.2 344 66.3
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 1.5e-128 463.4 348 68.7
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 2.0e-128 463.0 348 69.8
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 2.6e-128 462.6 350 66.9
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.4e-128 462.2 345 69.0
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 5.9e-128 461.5 345 69.0
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 2.2e-127 459.5 350 66.6
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 2.9e-127 459.1 344 65.7
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 1.4e-126 456.8 345 67.2
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.9e-126 456.4 341 66.6
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 2.5e-126 456.1 349 67.3
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 5.5e-126 454.9 348 64.9
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 1.6e-125 453.4 346 67.9
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.6e-125 453.4 340 67.6
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 2.1e-125 453.0 447 56.6
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 4.6e-125 451.8 353 65.7
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 6.1e-125 451.4 345 66.4
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 1.3e-124 450.3 346 66.5
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 1.3e-124 450.3 345 65.5
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 3.0e-124 449.1 345 64.6
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 3.9e-124 448.7 366 63.7
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 6.7e-124 448.0 346 64.5
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 6.7e-124 448.0 345 65.2
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 8.7e-124 447.6 344 65.1
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.5e-123 446.8 344 65.1
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 2.5e-123 446.0 345 65.2
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 2.5e-123 446.0 340 65.9
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 4.3e-123 445.3 350 65.1
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 4.3e-123 445.3 349 65.6
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 5.7e-123 444.9 340 64.1
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 7.4e-123 444.5 353 64.9
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.6e-122 443.4 344 64.2
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 2.2e-122 443.0 327 67.3
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 8.2e-122 441.0 349 66.2
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 1.8e-121 439.9 345 64.1
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.8e-121 439.9 344 65.1
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 2.4e-121 439.5 345 65.2
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 4.1e-121 438.7 342 66.1
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 5.3e-121 438.3 347 64.3
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 1.2e-120 437.2 346 64.5
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 7.7e-120 434.5 347 64.6
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.0e-119 434.1 345 64.1
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 6.5e-119 431.4 345 62.9
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 2.5e-118 429.5 342 64.0
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.2e-118 429.1 342 62.6
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 4.2e-118 428.7 350 64.0
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 7.2e-118 427.9 352 62.2
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 2.1e-117 426.4 346 63.0
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.1e-117 426.4 347 62.5
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 4.6e-117 425.2 347 63.1
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 6.1e-117 424.9 347 62.2
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 6.1e-117 424.9 352 61.9
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 7.9e-117 424.5 341 62.5
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 3.0e-116 422.5 350 63.1
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 3.0e-116 422.5 347 64.0
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 3.9e-116 422.2 346 59.8
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 4.4e-115 418.7 307 69.7
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.3e-114 417.2 348 60.3
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.2e-114 416.4 339 61.4
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 1.1e-113 414.1 345 62.3
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 3.1e-113 412.5 350 59.1
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 4.1e-113 412.1 346 58.7
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 1.0e-111 407.5 348 61.2
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.0e-111 407.5 361 59.6
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 1.0e-111 407.5 350 58.0
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.4e-110 403.7 303 68.6
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 2.5e-110 402.9 345 61.2
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.2e-110 402.5 344 59.9
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 9.4e-110 401.0 350 58.6
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.2e-109 400.6 351 60.1
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.4e-108 397.1 351 58.4
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 3.9e-108 395.6 263 74.5
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.5e-107 393.7 339 58.1
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 1.5e-107 393.7 346 56.6
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.0e-107 393.3 341 57.5
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 9.1e-105 384.4 293 66.9
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 5.0e-103 378.6 298 68.5
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 8.5e-103 377.9 245 79.2
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 9.4e-102 374.4 342 55.0
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 1.7e-98 363.6 301 64.1
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 4.8e-98 362.1 429 48.7
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.3e-95 354.0 336 51.2
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 6.5e-95 351.7 359 54.0
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 2.5e-94 349.7 325 59.1
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 3.8e-87 325.9 290 60.7
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.5e-86 323.9 283 60.8
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 3.2e-86 322.8 244 67.6
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 1.6e-85 320.5 300 58.3
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 8.0e-85 318.2 247 66.8
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 5.2e-84 315.5 341 45.7
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 4.4e-83 312.4 246 67.9
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 1.2e-80 304.3 276 55.4
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.5e-80 302.4 240 65.8
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 2.3e-79 300.1 339 47.5
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 1.9e-78 297.0 224 72.3
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 4.3e-78 295.8 187 76.5
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.8e-76 290.4 348 48.3
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 2.2e-74 283.5 338 41.4
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 3.2e-73 279.6 243 61.7
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 1.3e-71 274.2 340 42.4
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 3.9e-71 272.7 145 86.2
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 5.0e-71 272.3 271 52.0
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 1.1e-70 271.2 273 50.2
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 1.9e-70 270.4 246 59.8
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 5.6e-70 268.9 243 59.3
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 3.7e-66 256.1 337 45.1
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 7.3e-62 241.9 280 48.9
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 4.7e-61 239.2 272 45.2
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.6e-53 214.2 130 76.2
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.4e-50 201.8 140 70.7
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 3.8e-42 176.4 105 77.1
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.2e-41 172.9 131 69.5
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.7e-39 165.2 125 68.8
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 2.1e-37 160.6 141 58.9
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 1.1e-30 138.3 113 69.0
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 3.0e-23 113.6 74 70.3
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.5e-22 111.3 345 24.9
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 4.0e-20 103.2 149 32.9
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 7.1e-17 92.4 54 64.8
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.1e-16 90.9 57 71.9
PRCOL_00004263 Prasinoderma coloniale HOM05D068002 ORTHO05D004501 5.7e-14 82.8 293 23.9
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 8.2e-13 79.0 140 37.1
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 3.6e-08 63.5 101 39.6
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 5.1e-07 59.7 45 62.2


User provided reference genes

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