Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 8.3e-90 334.0 204 100.0
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.3e-55 220.3 229 63.8
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 4.6e-40 168.7 203 49.3
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 3.3e-38 162.5 203 47.8
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 3.3e-38 162.5 201 49.8
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 2.8e-37 159.5 208 46.6
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 4.8e-37 158.7 207 53.1
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.1e-36 157.5 207 44.9
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 1.8e-36 156.8 203 45.8
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.8e-36 156.8 199 49.2
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.8e-36 156.8 199 47.2
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 2.4e-36 156.4 206 47.1
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 2.6e-35 152.9 202 47.0
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 3.4e-35 152.5 209 51.7
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 3.8e-34 149.1 201 42.8
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 5.0e-34 148.7 203 46.3
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 1.9e-33 146.7 198 46.0
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.2e-32 144.1 245 38.0
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 4.8e-29 132.1 207 41.5
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 1.2e-27 127.5 213 40.4
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 1.5e-27 127.1 200 41.5
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 2.6e-27 126.3 206 49.0
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 7.7e-27 124.8 178 44.4
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.0e-26 124.4 202 39.1
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.0e-26 124.4 203 46.8
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.0e-26 124.4 203 49.3
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 1.7e-26 123.6 204 37.7
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 2.9e-26 122.9 201 45.3
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 6.5e-26 121.7 200 37.5
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 6.5e-26 121.7 205 41.5
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 1.1e-25 120.9 209 48.3
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.4e-25 120.6 203 47.8
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 2.5e-25 119.8 208 37.0
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 5.5e-25 118.6 200 36.5
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 7.2e-25 118.2 204 38.7
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.6e-24 117.1 201 39.8
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.1e-24 116.7 197 37.6
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.7e-24 116.3 196 38.8
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 3.6e-24 115.9 201 40.8
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.6e-24 115.9 199 36.2
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 3.6e-24 115.9 198 38.4
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 1.4e-23 114.0 209 43.5
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.8e-23 113.6 213 36.2
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 2.3e-23 113.2 215 37.2
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 3.9e-23 112.5 201 39.3
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 5.2e-23 112.1 201 37.8
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 5.2e-23 112.1 201 42.8
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 1.1e-22 110.9 201 36.8
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 2.6e-22 109.8 201 38.8
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.3e-22 109.4 207 38.2
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 5.7e-22 108.6 210 36.2
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 7.4e-22 108.2 203 37.9
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 7.4e-22 108.2 199 36.7
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 9.7e-22 107.8 201 37.8
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 9.7e-22 107.8 200 36.5
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 9.7e-22 107.8 219 36.5
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.3e-21 107.5 201 35.8
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.7e-21 107.1 206 35.9
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 3.7e-21 105.9 205 40.0
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.7e-21 105.9 203 36.9
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 4.8e-21 105.5 202 37.1
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 4.8e-21 105.5 203 36.9
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 4.8e-21 105.5 201 35.8
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 4.8e-21 105.5 201 37.3
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 4.8e-21 105.5 200 35.0
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 6.3e-21 105.1 202 37.1
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.1e-20 104.4 199 35.7
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 3.1e-20 102.8 194 37.1
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 3.1e-20 102.8 198 35.4
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 4.1e-20 102.4 206 37.9
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 5.3e-20 102.1 191 37.2
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 7.0e-20 101.7 206 35.4
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 9.1e-20 101.3 200 37.0
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 9.1e-20 101.3 203 36.0
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 1.2e-19 100.9 202 33.7
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.2e-19 100.9 200 35.0
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 2.0e-19 100.1 202 36.6
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.6e-19 99.8 204 36.3
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 2.6e-19 99.8 190 37.4
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 2.6e-19 99.8 211 33.2
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 4.5e-19 99.0 202 35.6
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 4.5e-19 99.0 202 35.6
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 4.5e-19 99.0 202 35.6
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 4.5e-19 99.0 192 32.8
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 7.7e-19 98.2 203 36.5
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 7.7e-19 98.2 205 33.7
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 1.0e-18 97.8 195 37.9
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 1.3e-18 97.4 203 35.5
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.7e-18 97.1 204 35.8
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.2e-18 96.7 192 38.0
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 2.2e-18 96.7 197 44.2
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 2.9e-18 96.3 201 36.8
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.9e-18 96.3 211 36.0
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 1.1e-17 94.4 196 41.3
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 1.5e-17 94.0 207 34.3
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.9e-17 93.6 204 32.8
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 3.2e-17 92.8 209 30.1
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 4.2e-17 92.4 206 33.0
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.2e-17 92.4 197 36.5
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 5.5e-17 92.0 204 32.4
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 7.2e-17 91.7 209 33.0
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 9.4e-17 91.3 204 35.8
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 9.4e-17 91.3 199 33.2
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 1.2e-16 90.9 204 36.8
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 1.6e-16 90.5 200 33.5
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 1.6e-16 90.5 202 35.6
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 3.6e-16 89.4 188 44.1
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 3.6e-16 89.4 203 34.5
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 4.7e-16 89.0 191 40.3
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 4.7e-16 89.0 203 35.0
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 4.7e-16 89.0 206 38.3
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 4.7e-16 89.0 72 61.1
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 6.1e-16 88.6 204 35.8
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 6.1e-16 88.6 195 42.1
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 6.1e-16 88.6 204 35.8
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 6.1e-16 88.6 209 32.5
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.0e-16 88.2 205 34.1
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.0e-16 88.2 205 34.1
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 8.0e-16 88.2 205 34.1
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.0e-15 87.8 194 36.1
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.0e-15 87.8 191 44.0
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 1.0e-15 87.8 201 34.8
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.4e-15 87.4 196 39.8
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.8e-15 87.0 183 40.4
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.3e-15 86.7 190 35.8
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 3.0e-15 86.3 191 42.9
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 3.0e-15 86.3 191 42.9
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 3.0e-15 86.3 191 42.9
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 3.0e-15 86.3 203 36.9
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 5.2e-15 85.5 204 36.3
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.2e-15 85.5 202 40.1
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 5.2e-15 85.5 202 40.1
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 6.7e-15 85.1 212 32.1
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 8.8e-15 84.7 73 57.5
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 8.8e-15 84.7 73 57.5
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 1.5e-14 84.0 188 34.0
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 2.0e-14 83.6 208 32.2
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 3.3e-14 82.8 210 31.4
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 3.3e-14 82.8 197 34.0
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 3.3e-14 82.8 191 35.6
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.5e-14 81.6 202 39.6
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 7.5e-14 81.6 212 32.1
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 2.2e-13 80.1 183 37.7
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.2e-13 80.1 80 53.8
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 4.8e-13 79.0 183 37.2
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 4.8e-13 79.0 183 37.2
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 6.3e-13 78.6 183 35.5
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 6.3e-13 78.6 183 35.5
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 6.3e-13 78.6 70 57.1
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 3.1e-12 76.3 71 54.9
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.0e-12 75.1 204 30.4
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 1.6e-11 73.9 200 33.5
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 2.0e-11 73.6 52 63.5
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 3.5e-11 72.8 68 57.4
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 5.9e-11 72.0 52 61.5
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 5.9e-11 72.0 72 51.4
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 3.8e-10 69.3 74 48.6
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 1.6e-08 63.9 192 30.2
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.1e-08 63.5 201 27.9
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 2.1e-08 63.5 49 59.2
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 2.7e-08 63.2 74 44.6
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 3.6e-08 62.8 205 31.2
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 4.7e-08 62.4 75 48.0
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 1.4e-07 60.8 219 26.9
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 2.6e-06 56.6 197 32.5
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 5.7e-06 55.5 51 52.9


User provided reference genes

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