Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 8.9e-117 423.7 228 100.0
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 3.3e-95 352.1 230 83.0
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 5.6e-95 351.3 231 82.7
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 2.1e-94 349.4 230 80.4
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 5.2e-48 195.3 224 54.0
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 5.2e-48 195.3 224 54.0
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 9.8e-47 191.0 232 53.4
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 1.7e-46 190.3 243 56.8
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 1.0e-43 181.0 229 53.3
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 1.7e-43 180.3 237 51.9
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 6.5e-43 178.3 231 51.9
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 8.5e-43 177.9 229 52.8
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 3.6e-41 172.6 211 53.6
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 4.7e-41 172.2 233 49.4
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 6.8e-40 168.3 237 50.2
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 2.6e-39 166.4 223 49.8
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 5.7e-39 165.2 225 51.1
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 2.2e-38 163.3 220 48.2
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 2.8e-38 162.9 233 51.5
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 6.3e-38 161.8 234 48.7
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 8.3e-38 161.4 232 49.1
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 1.8e-37 160.2 252 49.2
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 3.1e-37 159.5 219 48.4
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 4.1e-37 159.1 221 49.3
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 7.7e-36 154.8 231 47.6
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.7e-35 153.7 257 44.4
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 6.6e-35 151.8 228 47.4
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 3.3e-34 149.4 217 48.4
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 5.5e-34 148.7 213 48.4
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 7.2e-34 148.3 257 42.8
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 1.4e-32 144.1 201 51.7
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 3.0e-32 142.9 219 48.4
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.0e-32 142.5 216 48.1
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 5.2e-32 142.1 218 47.7
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 5.2e-32 142.1 222 46.4
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 8.9e-32 141.4 178 52.8
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 1.5e-31 140.6 204 48.5
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 4.4e-31 139.0 331 38.4
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 9.8e-31 137.9 218 45.9
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 2.2e-30 136.7 286 40.9
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 2.4e-29 133.3 234 43.2
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 4.1e-29 132.5 186 51.1
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.0e-29 131.7 228 45.6
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 9.2e-29 131.3 204 44.1
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 1.6e-28 130.6 219 46.6
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 2.0e-28 130.2 215 45.6
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.5e-28 129.4 218 47.2
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.5e-28 129.4 221 47.1
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 3.5e-28 129.4 230 43.5
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 5.9e-28 128.6 241 41.9
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 7.8e-28 128.3 230 44.8
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 7.8e-28 128.3 237 43.5
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.0e-27 127.9 202 51.0
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 1.3e-27 127.5 177 53.1
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.3e-27 127.5 218 45.0
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.7e-27 127.1 221 46.2
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.7e-27 127.1 221 46.2
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 1.7e-27 127.1 237 43.5
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 2.3e-27 126.7 188 47.3
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 2.5e-26 123.2 198 51.0
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.3e-26 122.9 214 44.9
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 3.3e-26 122.9 235 42.6
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 7.3e-26 121.7 223 44.8
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 9.5e-26 121.3 177 52.5
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 2.1e-25 120.2 215 44.2
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 2.8e-25 119.8 240 39.6
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 8.0e-25 118.2 179 44.1
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.1e-24 116.3 179 43.6
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 3.1e-24 116.3 214 43.0
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 5.2e-24 115.5 228 44.7
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.0e-23 113.6 179 44.1
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 4.4e-23 112.5 181 45.9
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 7.5e-23 111.7 205 42.4
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 1.3e-22 110.9 217 40.1
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 1.7e-22 110.5 214 42.5
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 1.7e-22 110.5 209 44.5
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 2.2e-22 110.2 202 43.6
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 3.7e-22 109.4 207 43.5
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 3.7e-22 109.4 224 42.4
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 1.9e-21 107.1 212 41.5
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 1.2e-20 104.4 197 43.1
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.6e-20 104.0 242 38.4
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.6e-20 104.0 223 39.9
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 2.0e-20 103.6 211 42.7
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 2.7e-20 103.2 217 38.2
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 2.7e-20 103.2 195 48.2
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.6e-20 102.4 223 40.4
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 6.0e-20 102.1 138 47.8
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 2.3e-19 100.1 212 41.0
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 2.3e-19 100.1 232 37.5
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 2.3e-19 100.1 251 38.2
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 3.9e-19 99.4 212 39.6
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 3.9e-19 99.4 118 57.6
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 6.6e-19 98.6 249 37.3
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 1.5e-18 97.4 223 37.2
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 7.3e-18 95.1 231 37.7
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 7.3e-18 95.1 222 37.4
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 7.3e-18 95.1 186 43.5
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 1.2e-17 94.4 219 37.0
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 1.6e-17 94.0 244 36.5
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 1.6e-17 94.0 244 36.5
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.6e-17 94.0 235 38.3
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.1e-17 93.6 213 38.0
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 2.8e-17 93.2 165 52.1
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 4.7e-17 92.4 244 36.1
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 8.1e-17 91.7 179 47.5
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 1.4e-16 90.9 238 35.7
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.3e-16 90.1 170 41.8
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 2.3e-16 90.1 154 46.8
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 3.1e-16 89.7 241 36.1
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 3.1e-16 89.7 249 34.1
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 4.0e-16 89.4 235 36.2
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 8.9e-16 88.2 250 34.4
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 3.4e-15 86.3 225 35.6
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 9.8e-15 84.7 238 35.3
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 1.3e-14 84.3 168 41.7
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 1.7e-14 84.0 191 39.8
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 2.9e-14 83.2 216 38.0
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 6.4e-14 82.0 265 33.2
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.1e-13 81.3 162 43.2
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.9e-13 80.5 294 31.6
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 4.1e-13 79.3 215 35.8
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 4.1e-13 79.3 204 37.3
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 7.1e-13 78.6 237 35.0
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.6e-12 77.4 198 36.9
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 1.6e-12 77.4 245 33.5
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 2.1e-12 77.0 237 33.3
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 6.0e-12 75.5 218 36.2
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 6.0e-12 75.5 204 35.8
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 6.0e-12 75.5 130 46.2
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.8e-12 75.1 103 44.7
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 1.0e-11 74.7 215 34.9
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 3.9e-11 72.8 143 43.4
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 6.6e-11 72.0 197 35.0
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 4.3e-10 69.3 216 34.7
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.2e-09 67.8 304 29.3
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 2.1e-09 67.0 303 28.4
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 8.1e-09 65.1 110 45.5
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 2.3e-08 63.5 169 36.1
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 5.2e-08 62.4 127 37.0
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 1.2e-07 61.2 179 38.5
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 1.5e-07 60.8 153 35.3
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 7.6e-07 58.5 144 37.5
Ca_04370_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 2.9e-06 56.6 99 51.5
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 3.7e-06 56.2 98 45.9
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 3.7e-06 56.2 108 38.9
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 8.4e-06 55.1 153 34.6
unitig_748.g8746 Utricularia gibba HOM05D004795 ORTHO05D005518 8.4e-06 55.1 113 38.9


User provided reference genes

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