Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G065800 Phaseolus vulgaris HOM05D006225 ORTHO05D007676 2.2e-202 708.8 360 100.0
VMungo0464G1087 Vigna mungo HOM05D006225 ORTHO05D007676 6.6e-191 670.6 369 93.5
Glyma.13G045900 Glycine max HOM05D006225 ORTHO05D007676 9.9e-187 656.8 360 91.9
Glyma.19G049100 Glycine max HOM05D006225 ORTHO05D007676 4.6e-184 647.9 360 91.1
Ca_13730_v3 Cicer arietinum L. HOM05D006225 ORTHO05D007676 9.6e-174 613.6 360 86.7
Psat1g081360 Pisum sativum HOM05D006225 ORTHO05D007676 1.2e-171 606.7 361 85.9
TPR.G32473 Trifolium pratense HOM05D006225 ORTHO05D007676 4.5e-171 604.7 360 85.0
Lj2g0022404 Lotus japonicus HOM05D006225 ORTHO05D007676 2.2e-170 602.4 361 84.8
Medtr6g018620 Medicago truncatula HOM05D006225 ORTHO05D007676 4.6e-168 594.7 360 84.7
Lalb_Chr06g0174551 Lupinus albus HOM05D006225 ORTHO05D007676 1.1e-166 590.1 412 76.5
FAN03G3320 Fragaria x ananassa HOM05D006225 ORTHO05D007676 1.5e-158 563.1 360 78.1
FvH4_7g12860 Fragaria vesca HOM05D006225 ORTHO05D007676 9.7e-158 560.5 360 77.5
FAN06G1752 Fragaria x ananassa HOM05D006225 ORTHO05D007676 9.7e-158 560.5 360 77.5
CiPaw.03G061500 Carya illinoinensis HOM05D006225 ORTHO05D007676 2.0e-155 552.7 360 76.4
Prupe.2G152900 Prunus persica HOM05D006225 ORTHO05D007676 1.6e-152 543.1 360 75.8
Thecc.04G133700 Theobroma cacao HOM05D006225 ORTHO05D007676 1.6e-152 543.1 360 75.0
CANSAT78G2127 Cannabis sativa HOM05D006225 ORTHO05D007676 1.4e-151 540.0 360 74.7
TWI77G0942 Tripterygium wilfordii HOM05D006225 ORTHO05D007676 1.8e-151 539.7 360 76.1
Manes.02G068700 Manihot esculenta HOM05D006225 ORTHO05D007676 3.9e-151 538.5 361 75.3
CSS0013578 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 6.7e-151 537.7 361 74.5
CSS0045838 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 1.5e-150 536.6 361 74.2
CsaV3_3G020710 Cucumis sativus L. HOM05D006225 ORTHO05D007676 2.0e-150 536.2 360 75.6
COL.COLO4_09333 Corchorus olitorius HOM05D006225 ORTHO05D007676 1.1e-148 530.4 360 75.0
Atru.chr1.1695 Acer truncatum HOM05D006225 ORTHO05D007676 1.8e-148 529.6 360 74.2
Gohir.D12G052400 Gossypium hirsutum HOM05D006225 ORTHO05D007676 2.4e-148 529.3 360 73.6
TAR374G0830 Trochodendron aralioides HOM05D006225 ORTHO05D007676 6.9e-148 527.7 361 73.4
Gohir.A12G053700 Gossypium hirsutum HOM05D006225 ORTHO05D007676 1.2e-147 526.9 360 73.3
Gorai.008G055500 Gossypium raimondii HOM05D006225 ORTHO05D007676 1.2e-147 526.9 360 73.3
PGR042G1089 Punica granatum HOM05D006225 ORTHO05D007676 5.9e-147 524.6 361 72.9
MD02G1195600 Malus domestica HOM05D006225 ORTHO05D007676 6.5e-146 521.2 360 74.2
Potri.017G115200 Populus trichocarpa HOM05D006225 ORTHO05D007676 3.2e-145 518.8 361 72.0
SGA_v2.0_scaffold33G13506 Striga asiatica HOM05D006225 ORTHO05D007676 1.6e-144 516.5 361 72.3
Ciclev10012061m.g Citrus clementina HOM05D006225 ORTHO05D007676 6.1e-144 514.6 360 71.4
Lj4A191G46 Lonicera japonica HOM05D006225 ORTHO05D007676 3.0e-143 512.3 348 75.6
Sed0021803 Sechium edule HOM05D006225 ORTHO05D007676 3.0e-143 512.3 380 70.8
ECA238G0211 Erigeron canadensis HOM05D006225 ORTHO05D007676 5.1e-143 511.5 362 70.4
GSVIVG01031021001 Vitis vinifera HOM05D006225 ORTHO05D007676 1.3e-141 506.9 364 71.4
Eucgr.G01883 Eucalyptus grandis HOM05D006225 ORTHO05D007676 2.8e-141 505.8 360 70.6
Migut.H00218 Erythranthe guttata HOM05D006225 ORTHO05D007676 1.1e-140 503.8 361 70.6
HanXRQChr14g0438471 Helianthus annuus HOM05D006225 ORTHO05D007676 2.4e-140 502.7 361 69.5
Sp7g03650 Schrenkiella parvula HOM05D006225 ORTHO05D007676 1.2e-139 500.4 354 70.6
CARHR214220 Cardamine hirsuta HOM05D006225 ORTHO05D007676 4.5e-139 498.4 348 70.7
Thhalv10027811m.g Eutrema salsugineum HOM05D006225 ORTHO05D007676 5.9e-139 498.0 347 71.2
AT5G38380 Arabidopsis thaliana HOM05D006225 ORTHO05D007676 2.2e-138 496.1 345 70.4
Sabra17G0095400 Salix brachista HOM05D006225 ORTHO05D007676 5.0e-138 495.0 361 70.6
AL7G52230 Arabidopsis lyrata HOM05D006225 ORTHO05D007676 6.5e-138 494.6 345 70.4
Sopen02g030750 Solanum pennellii HOM05D006225 ORTHO05D007676 1.2e-136 490.3 380 67.4
C04p45020 Brassica napus HOM05D006225 ORTHO05D007676 4.7e-136 488.4 355 68.7
BolC4t26080H Brassica oleracea HOM05D006225 ORTHO05D007676 4.7e-136 488.4 355 68.7
THA.LOC104823860 Tarenaya hassleriana HOM05D006225 ORTHO05D007676 8.0e-136 487.6 345 70.4
Aa31LG9G17110 Aethionema arabicum HOM05D006225 ORTHO05D007676 1.0e-135 487.3 359 67.4
A04p11390 Brassica napus HOM05D006225 ORTHO05D007676 1.4e-135 486.9 354 69.2
BraA04t16801Z Brassica rapa HOM05D006225 ORTHO05D007676 1.4e-135 486.9 355 69.3
BcaB02g08011 Brassica carinata HOM05D006225 ORTHO05D007676 3.9e-135 485.3 349 69.3
Nn4g23886 Nelumbo nucifera HOM05D006225 ORTHO05D007676 6.7e-135 484.6 325 73.5
BcaB06g27198 Brassica carinata HOM05D006225 ORTHO05D007676 9.7e-134 480.7 355 67.6
BcaC02g09645 Brassica carinata HOM05D006225 ORTHO05D007676 1.3e-133 480.3 355 67.9
QL02p051369 Quercus lobata HOM05D006225 ORTHO05D007676 1.7e-133 479.9 406 64.3
AUR62023301 Chenopodium quinoa HOM05D006225 ORTHO05D007676 4.8e-133 478.4 364 66.5
PSO063G1031 Papaver somniferum HOM05D006225 ORTHO05D007676 7.7e-131 471.1 361 65.1
PGSC0003DMG400026393 Solanum tuberosum HOM05D006225 ORTHO05D007676 2.9e-130 469.2 329 71.4
Lsat_1_v5_gn_2_79301 Lactuca sativa HOM05D006225 ORTHO05D007676 3.2e-129 465.7 361 65.9
Aqoxy3G03957 Aquilegia oxysepala HOM05D006225 ORTHO05D007676 5.5e-129 464.9 336 66.7
PSO782G1071 Papaver somniferum HOM05D006225 ORTHO05D007676 6.1e-128 461.5 357 64.4
SalBow3G1182 Salvia bowleyana HOM05D006225 ORTHO05D007676 6.3e-125 451.4 369 64.2
Cpa.g.sc282.8 Carica papaya HOM05D006225 ORTHO05D007676 4.1e-124 448.7 359 65.7
Zm00001eb360540 Zea mays HOM05D006225 ORTHO05D007676 3.8e-122 442.2 345 61.4
Carub.0007s3769 Capsella rubella HOM05D006225 ORTHO05D007676 1.9e-121 439.9 342 65.8
Os07g0283200 Oryza sativa ssp. japonica HOM05D006225 ORTHO05D007676 5.5e-121 438.3 342 62.3
arahy.Tifrunner.gnm1.ann1.80Z7L9 Arachis hypogaea HOM05D006225 ORTHO05D007676 1.3e-117 427.2 398 62.1
Oeu030786.4 Olea europaea HOM05D006225 ORTHO05D007676 2.8e-117 426.0 295 72.5
HPP92_020146 Vanilla planifolia HOM05D006225 ORTHO05D007676 3.7e-117 425.6 361 59.6
SEGI_09013 Sequoiadendron giganteum HOM05D006225 ORTHO05D007676 3.1e-116 422.5 342 59.4
vmacro05555 Vaccinium macrocarpon HOM05D006225 ORTHO05D007676 5.9e-115 418.3 379 59.9
Nitab4.5_0000659g0030 Nicotiana tabacum HOM05D006225 ORTHO05D007676 1.5e-110 403.7 324 65.1
Nitab4.5_0000912g0210 Nicotiana tabacum HOM05D006225 ORTHO05D007676 1.7e-109 400.2 324 65.4
unitig_0.g7 Utricularia gibba HOM05D006225 ORTHO05D007676 2.9e-109 399.4 343 59.5
ATR1125G113 Amborella trichopoda HOM05D006225 ORTHO05D007676 1.1e-108 397.5 343 60.1
EL10Ac2g04565 Beta vulgaris HOM05D006225 ORTHO05D007676 5.4e-108 395.2 305 65.2
MELO3C023807.2 Cucumis melo HOM05D006225 ORTHO05D007676 4.6e-107 392.1 430 53.0
arahy.Tifrunner.gnm1.ann1.IRK6TR Arachis hypogaea HOM05D006225 ORTHO05D007676 3.3e-105 386.0 369 61.0
Cfa007923 Carpinus fangiana HOM05D006225 ORTHO05D010559 9.8e-102 374.4 254 75.2
AUR62009001 Chenopodium quinoa HOM05D006225 ORTHO05D007676 4.1e-100 369.0 378 54.0
Rhsim10G0067300 Rhododendron simsii HOM05D006225 ORTHO05D007676 9.5e-97 357.8 365 54.5
ClCG05G011660 Citrullus lanatus HOM05D006225 ORTHO05D007676 8.1e-96 354.8 387 54.3
Sc11g0008330 Simmondsia chinensis HOM05D006225 ORTHO05D007676 3.4e-94 349.4 262 66.8
FAN10G1546 Fragaria x ananassa HOM05D006225 ORTHO05D007676 2.3e-90 336.7 363 52.6
Mapoly0135s0006 Marchantia polymorpha HOM05D006225 ORTHO05D007676 9.9e-86 321.2 342 48.2
Haze_14153 Corylus avellana HOM05D006225 ORTHO05D007676 6.0e-83 312.0 349 53.9
Pp3c6_6620 Physcomitrium patens HOM05D006225 ORTHO05D007676 1.3e-82 310.8 322 46.9
RcHm_v2.0_Chr1g0351931 Rosa chinensis HOM05D006225 ORTHO05D007676 2.1e-75 287.0 166 82.5
Zm00001eb156340 Zea mays HOM05D006225 ORTHO05D007676 7.8e-75 285.0 248 58.1
Actinidia15885 Actinidia chinensis HOM05D006225 ORTHO05D007676 1.2e-70 271.2 167 78.4
RcHm_v2.0_Chr1g0351941 Rosa chinensis HOM05D006225 ORTHO05D007676 9.9e-70 268.1 177 78.5
Cc07_g08800 Coffea canephora HOM05D006225 ORTHO05D007676 1.1e-68 264.6 172 73.8
FAN06G4019 Fragaria x ananassa HOM05D006225 ORTHO05D007676 5.4e-68 262.3 177 75.7
Peaxi162Scf00394g00621 Petunia axillaris HOM05D006225 ORTHO05D007676 2.5e-65 253.4 186 70.4
FAN10G1204 Fragaria x ananassa HOM05D006225 ORTHO05D007676 5.6e-65 252.3 175 72.6
Cc07_g08810 Coffea canephora HOM05D006225 ORTHO05D007676 1.8e-63 247.3 177 72.3
Eucgr.H04974 Eucalyptus grandis HOM05D006225 ORTHO05D007676 4.0e-63 246.1 239 54.4
SMO196G0121 Selaginella moellendorffii HOM05D006225 ORTHO05D007676 1.3e-58 231.1 309 40.1
Solyc02g086060.4 Solanum lycopersicum HOM05D006225 ORTHO05D007676 1.3e-58 231.1 181 68.0
Hund13715 Selenicereus undatus HOM05D006225 ORTHO05D007676 8.7e-58 228.4 169 64.5
Solyc02g086070.2 Solanum lycopersicum HOM05D006225 ORTHO05D007676 2.5e-52 210.3 158 67.1
Hma1.2p1_0136F.1_g062270 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 6.0e-51 205.7 123 75.6
CDE02G4721 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 5.1e-50 202.6 174 58.6
arahy.Tifrunner.gnm1.ann1.8IQW6A Arachis hypogaea HOM05D006225 ORTHO05D007676 3.1e-47 193.4 110 81.8
Peaxi162Scf00394g00622 Petunia axillaris HOM05D006225 ORTHO05D007676 2.2e-45 187.2 108 79.6
arahy.Tifrunner.gnm1.ann1.RE0KC5 Arachis hypogaea HOM05D006225 ORTHO05D007676 2.9e-45 186.8 139 69.8
arahy.Tifrunner.gnm1.ann1.PRIQ1K Arachis hypogaea HOM05D006225 ORTHO05D007676 4.2e-44 183.0 128 72.7
MD07G1125200 Malus domestica HOM05D006225 ORTHO05D007676 2.7e-43 180.3 110 77.3
Oeu008428.1 Olea europaea HOM05D006225 ORTHO05D007676 1.4e-39 167.9 214 48.6
arahy.Tifrunner.gnm1.ann1.QBFC9G Arachis hypogaea HOM05D006225 ORTHO05D007676 7.7e-38 162.2 126 66.7
arahy.Tifrunner.gnm1.ann1.QHM34M Arachis hypogaea HOM05D006225 ORTHO05D007676 6.5e-37 159.1 133 63.2
arahy.Tifrunner.gnm1.ann1.A87HRQ Arachis hypogaea HOM05D006225 ORTHO05D007676 4.2e-36 156.4 104 76.0
HanXRQChr13g0396101 Helianthus annuus HOM05D006225 ORTHO05D007676 2.7e-35 153.7 91 80.2
Mapoly0085s0089 Marchantia polymorpha HOM05D006555 ORTHO05D008376 3.6e-35 153.3 380 28.9
SHI22412 Sapria himalayana HOM05D006225 ORTHO05D007676 1.1e-33 148.3 94 72.3
CDE02G0503 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 9.7e-33 145.2 112 60.7
arahy.Tifrunner.gnm1.ann1.FD2CEU Arachis hypogaea HOM05D006225 ORTHO05D007676 9.1e-31 138.7 104 71.2
arahy.Tifrunner.gnm1.ann1.5T0UVN Arachis hypogaea HOM05D006225 ORTHO05D007676 4.2e-28 129.8 75 82.7
Actinidia36322 Actinidia chinensis HOM05D006225 ORTHO05D007676 4.8e-24 116.3 82 73.2
CBR_g65298 Chara braunii HOM05D006225 ORTHO05D007676 7.7e-22 109.0 123 41.5
Hma1.2p1_0239F.1_g099920 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 1.0e-21 108.6 78 66.7
arahy.Tifrunner.gnm1.ann1.GQQ1MZ Arachis hypogaea HOM05D006225 ORTHO05D007676 4.2e-20 103.2 75 70.7
CBR_g8910 Chara braunii HOM05D006555 ORTHO05D008376 4.2e-20 103.2 225 32.0
Eucgr.L03301 Eucalyptus grandis HOM05D006225 ORTHO05D007676 7.2e-20 102.4 79 67.1
MD07G1125400 Malus domestica HOM05D006225 ORTHO05D007676 2.7e-19 100.5 115 56.5
arahy.Tifrunner.gnm1.ann1.LDE0EK Arachis hypogaea HOM05D006555 ORTHO05D008376 8.0e-11 72.4 274 23.4
Duzib187G0608 Durio zibethinus HOM05D006555 ORTHO05D008376 8.0e-11 72.4 314 24.5
Actinidia36057 Actinidia chinensis HOM05D006555 ORTHO05D008376 1.0e-10 72.0 311 24.8
TWI56G0535 Tripterygium wilfordii HOM05D006555 ORTHO05D008376 1.4e-10 71.6 337 24.9
MSTRG.3197 Avicennia marina HOM05D006555 ORTHO05D008376 1.8e-10 71.2 257 25.3
CiPaw.03G033500 Carya illinoinensis HOM05D006555 ORTHO05D008376 3.0e-10 70.5 249 24.9
Lsat_1_v5_gn_0_24261 Lactuca sativa HOM05D006555 ORTHO05D008376 3.4e-09 67.0 311 22.8
TPR.G27718 Trifolium pratense HOM05D006555 ORTHO05D008376 8.3e-08 62.4 322 23.0
HanXRQChr15g0474321 Helianthus annuus HOM05D006555 ORTHO05D008376 1.4e-07 61.6 253 23.7
Sc20g0004830 Simmondsia chinensis HOM05D006555 ORTHO05D008376 1.4e-07 61.6 317 24.0
Duzib147G0944 Durio zibethinus HOM05D006555 ORTHO05D008376 2.4e-07 60.8 334 23.4
BcaC04g24063 Brassica carinata HOM05D006225 ORTHO05D007676 4.1e-07 60.1 43 60.5
SEGI_26593 Sequoiadendron giganteum HOM05D006555 ORTHO05D008376 2.0e-06 57.8 149 26.8


User provided reference genes

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