Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G062200 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 2.7e-227 791.6 382 100.0
Phvul.001G265100 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 5.4e-207 724.2 385 90.6
Phvul.003G159000 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 2.7e-206 721.8 384 91.1
Phvul.006G052100 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.5e-204 716.1 384 90.9
Phvul.002G276000 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 2.8e-200 701.8 380 88.4
Phvul.001G264800 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 3.7e-192 674.9 379 88.1
Phvul.001G264900 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 6.2e-187 657.5 386 85.8
Phvul.006G051600 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 4.3e-180 634.8 347 88.5
Phvul.004G062300 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 3.6e-179 631.7 337 91.1
Phvul.006G051800 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 2.6e-153 545.8 321 84.7
Phvul.006G051900 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 4.2e-127 458.8 240 90.4
Glyma.16G161700 Glycine max HOM05D007822 ORTHO05D009360 5.1e-117 425.2 384 57.0
Glyma.15G092300 Glycine max HOM05D007822 ORTHO05D009360 1.3e-104 384.0 386 52.8
Medtr3g084690 Medicago truncatula HOM05D007822 ORTHO05D009360 3.7e-91 339.3 386 45.6
TPR.G18087 Trifolium pratense HOM05D007822 ORTHO05D009360 9.1e-90 334.7 385 46.2
Ca_08383_v3 Cicer arietinum L. HOM05D007822 ORTHO05D009360 1.3e-88 330.9 375 46.1
TPR.G18082 Trifolium pratense HOM05D007822 ORTHO05D009360 2.1e-86 323.6 385 44.2
Dinv16858 Davidia involucrata HOM05D007822 ORTHO05D009360 2.8e-86 323.2 377 44.0
Medtr1g016400 Medicago truncatula HOM05D007822 ORTHO05D009360 1.4e-85 320.9 381 44.4
Medtr1g017120 Medicago truncatula HOM05D007822 ORTHO05D009360 3.0e-85 319.7 381 44.1
arahy.Tifrunner.gnm1.ann1.A760R9 Arachis hypogaea HOM05D007822 ORTHO05D009360 1.5e-84 317.4 391 44.8
TPR.G19769 Trifolium pratense HOM05D007822 ORTHO05D009360 2.4e-82 310.1 326 48.5
Glyma.03G020200 Glycine max HOM05D007822 ORTHO05D009360 6.6e-80 302.0 392 44.6
TPR.G34642 Trifolium pratense HOM05D007822 ORTHO05D009360 1.0e-77 294.7 403 40.9
VMungo1215G0886 Vigna mungo HOM05D007822 ORTHO05D009360 1.2e-76 291.2 395 41.5
TPR.G33992 Trifolium pratense HOM05D007822 ORTHO05D009360 1.5e-76 290.8 383 41.5
arahy.Tifrunner.gnm1.ann1.6X56G5 Arachis hypogaea HOM05D007822 ORTHO05D009360 4.9e-75 285.8 367 42.8
Medtr2g450270 Medicago truncatula HOM05D007822 ORTHO05D009360 9.2e-74 281.6 389 40.6
arahy.Tifrunner.gnm1.ann1.HWH8LL Arachis hypogaea HOM05D007822 ORTHO05D009360 1.6e-73 280.8 383 41.5
arahy.Tifrunner.gnm1.ann1.JJB16R Arachis hypogaea HOM05D007822 ORTHO05D009360 8.6e-72 275.0 381 41.7
arahy.Tifrunner.gnm1.ann1.Z44N3D Arachis hypogaea HOM05D007822 ORTHO05D009360 5.6e-71 272.3 383 42.0
arahy.Tifrunner.gnm1.ann1.N9Y9CH Arachis hypogaea HOM05D007822 ORTHO05D009360 3.1e-69 266.5 389 40.4
Lalb_Chr07g0186991 Lupinus albus HOM05D007822 ORTHO05D009360 3.1e-69 266.5 370 42.2
Lalb_Chr23g0273121 Lupinus albus HOM05D007822 ORTHO05D009360 3.1e-69 266.5 227 54.2
arahy.Tifrunner.gnm1.ann1.2QW5CK Arachis hypogaea HOM05D007822 ORTHO05D009360 2.0e-68 263.8 386 40.7
Prupe.2G273800 Prunus persica HOM05D007822 ORTHO05D009360 9.8e-68 261.5 402 39.8
arahy.Tifrunner.gnm1.ann1.00A0K2 Arachis hypogaea HOM05D007822 ORTHO05D009360 1.3e-67 261.2 354 42.1
TPR.G34648 Trifolium pratense HOM05D007822 ORTHO05D009360 2.9e-67 260.0 314 44.9
arahy.Tifrunner.gnm1.ann1.30JHYY Arachis hypogaea HOM05D007822 ORTHO05D009360 1.1e-63 248.1 388 38.4
Rhsim01G0262200 Rhododendron simsii HOM05D007822 ORTHO05D009360 1.9e-63 247.3 387 36.4
Psat2g094240 Pisum sativum HOM05D007822 ORTHO05D009360 2.5e-63 246.9 230 51.7
Oeu042537.1 Olea europaea HOM05D007822 ORTHO05D009360 2.0e-60 237.3 387 33.3
Rhsim09G0189100 Rhododendron simsii HOM05D007822 ORTHO05D009360 7.1e-58 228.8 385 35.6
arahy.Tifrunner.gnm1.ann1.GB1I3E Arachis hypogaea HOM05D007822 ORTHO05D009360 6.0e-57 225.7 382 35.9
arahy.Tifrunner.gnm1.ann1.SE6DU5 Arachis hypogaea HOM05D007822 ORTHO05D009360 1.1e-55 221.5 238 45.8
arahy.Tifrunner.gnm1.ann1.B28JH2 Arachis hypogaea HOM05D007822 ORTHO05D009360 1.6e-54 217.6 304 42.4
Rhsim09G0015300 Rhododendron simsii HOM05D007822 ORTHO05D009360 6.6e-48 195.7 387 34.6
Sc09g0001470 Simmondsia chinensis HOM05D007822 ORTHO05D009360 8.7e-48 195.3 398 33.2
arahy.Tifrunner.gnm1.ann1.97QIN4 Arachis hypogaea HOM05D007822 ORTHO05D009360 2.5e-47 193.7 250 42.8
Sc09g0001460 Simmondsia chinensis HOM05D007822 ORTHO05D009360 4.8e-46 189.5 395 32.9
arahy.Tifrunner.gnm1.ann1.IQQ1WH Arachis hypogaea HOM05D007822 ORTHO05D009360 5.3e-45 186.0 202 48.0
arahy.Tifrunner.gnm1.ann1.UXA4FW Arachis hypogaea HOM05D007822 ORTHO05D009360 6.9e-45 185.7 321 36.4
Medtr6g034615 Medicago truncatula HOM05D007822 ORTHO05D009360 1.4e-42 177.9 170 49.4
arahy.Tifrunner.gnm1.ann1.UHL69B Arachis hypogaea HOM05D007822 ORTHO05D009360 2.4e-42 177.2 253 41.5
VMungo1309G2027 Vigna mungo HOM05D007822 ORTHO05D009360 1.3e-38 164.9 247 39.3
TPR.G19772 Trifolium pratense HOM05D007822 ORTHO05D009360 3.4e-36 156.8 201 38.8
arahy.Tifrunner.gnm1.ann1.LY7S5B Arachis hypogaea HOM05D007822 ORTHO05D009360 6.4e-35 152.5 294 33.0
TPR.G33966 Trifolium pratense HOM05D007822 ORTHO05D009360 2.4e-34 150.6 127 50.4
TPR.G11880 Trifolium pratense HOM05D000005 ORTHO05D009360 6.0e-33 146.0 172 42.4
DCAR_014640 Daucus carota HOM05D007822 ORTHO05D009360 1.1e-31 141.7 203 39.4
RhsimUnG0026200 Rhododendron simsii HOM05D007822 ORTHO05D009360 5.3e-29 132.9 188 36.7
Psat5g099000 Pisum sativum HOM05D007822 ORTHO05D009360 3.5e-25 120.2 125 45.6
Lalb_Chr23g0273131 Lupinus albus HOM05D007822 ORTHO05D009360 1.5e-23 114.8 104 54.8
arahy.Tifrunner.gnm1.ann1.JV62Q3 Arachis hypogaea HOM05D007822 ORTHO05D009360 5.7e-23 112.8 130 43.8
Rhsim10G0180500 Rhododendron simsii HOM05D007822 ORTHO05D009360 3.7e-22 110.2 219 33.8
Lalb_Chr23g0273141 Lupinus albus HOM05D007822 ORTHO05D009360 4.8e-22 109.8 102 53.9
Medtr6g060160 Medicago truncatula HOM05D007822 ORTHO05D009360 4.1e-21 106.7 132 43.9
TPR.G18088 Trifolium pratense HOM05D007822 ORTHO05D009360 4.5e-20 103.2 92 51.1
Medtr6g034605 Medicago truncatula HOM05D007822 ORTHO05D009360 1.6e-17 94.7 107 41.1
TPR.G19764 Trifolium pratense HOM05D007822 ORTHO05D009360 6.1e-17 92.8 119 42.0
Psat5g098960 Pisum sativum HOM05D007822 ORTHO05D009360 1.0e-16 92.0 126 38.9
Lalb_Chr23g0273151 Lupinus albus HOM05D007822 ORTHO05D009360 3.0e-16 90.5 78 53.8
TPR.G24719 Trifolium pratense HOM05D007822 ORTHO05D009360 7.4e-15 85.9 122 41.0
TPR.G8151 Trifolium pratense HOM05D007822 ORTHO05D009360 9.7e-15 85.5 154 35.1
Medtr3g084700 Medicago truncatula HOM05D007822 ORTHO05D009360 2.2e-14 84.3 120 41.7
Medtr3g084660 Medicago truncatula HOM05D007822 ORTHO05D009360 2.4e-13 80.9 127 38.6
TPR.G5267 Trifolium pratense HOM05D007822 ORTHO05D009360 3.1e-13 80.5 344 23.3
Ciclev10020526m.g Citrus clementina HOM05D002420 ORTHO05D002422 1.5e-12 78.2 320 23.4
arahy.Tifrunner.gnm1.ann1.WW5NKJ Arachis hypogaea HOM05D007822 ORTHO05D009360 4.5e-12 76.6 73 47.9
QL06p045688 Quercus lobata HOM05D002420 ORTHO05D002422 4.5e-12 76.6 357 21.3
Medtr8g080950 Medicago truncatula HOM05D007822 ORTHO05D009360 6.5e-11 72.8 181 26.0
CiPaw.01G036300 Carya illinoinensis HOM05D002420 ORTHO05D002422 1.1e-10 72.0 210 29.5
TAR625G1137 Trochodendron aralioides HOM05D001729 ORTHO05D001155 1.9e-10 71.2 371 24.5
AUR62003166 Chenopodium quinoa HOM05D002420 ORTHO05D002422 2.5e-10 70.9 207 27.5
Sc01g0006370 Simmondsia chinensis HOM05D022095 ORTHO05D009360 3.2e-10 70.5 100 33.0
CiPaw.01G036200 Carya illinoinensis HOM05D002420 ORTHO05D002422 4.2e-10 70.1 340 24.1
GSVIVG01018983001 Vitis vinifera HOM05D002420 ORTHO05D002422 7.2e-10 69.3 278 25.5
Duzib187G1349 Durio zibethinus HOM05D002420 ORTHO05D002422 1.6e-09 68.2 285 23.5
Manes.18G080800 Manihot esculenta HOM05D002420 ORTHO05D002422 1.6e-09 68.2 202 27.7
Atru.chr3.556 Acer truncatum HOM05D002420 ORTHO05D002422 2.1e-09 67.8 197 27.4
C02p57550 Brassica napus HOM05D007162 ORTHO05D007631 2.1e-09 67.8 394 23.6
BolC2t11828H Brassica oleracea HOM05D007162 ORTHO05D007631 4.6e-09 66.6 394 23.6
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 4.6e-09 66.6 96 40.6
RcHm_v2.0_Chr2g0101881 Rosa chinensis HOM05D002420 ORTHO05D002422 4.6e-09 66.6 202 26.7
Cfa004296 Carpinus fangiana HOM05D002420 ORTHO05D002422 6.1e-09 66.2 205 24.9
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 7.9e-09 65.9 253 26.9
PSO541G4811 Papaver somniferum HOM05D008326 ORTHO05D001155 1.0e-08 65.5 334 22.2
Sc19g0005840 Simmondsia chinensis HOM05D022095 ORTHO05D009360 1.0e-08 65.5 101 33.7
BcaC03g17742 Brassica carinata HOM05D007162 ORTHO05D007631 1.4e-08 65.1 394 23.6
MD02G1150300 Malus domestica HOM05D002420 ORTHO05D002422 1.4e-08 65.1 200 25.5
FvH4_4g20690 Fragaria vesca HOM05D007162 ORTHO05D007631 1.8e-08 64.7 356 22.8
Sp2g19920 Schrenkiella parvula HOM05D007162 ORTHO05D007631 3.0e-08 63.9 387 22.0
Haze_15106 Corylus avellana HOM05D002420 ORTHO05D002422 3.9e-08 63.5 361 22.4
Gorai.002G031500 Gossypium raimondii HOM05D007162 ORTHO05D007631 5.1e-08 63.2 380 20.5
Medtr4g134390 Medicago truncatula HOM05D002420 ORTHO05D002422 5.1e-08 63.2 354 21.8
FAN07G2689 Fragaria x ananassa HOM05D007162 ORTHO05D007631 6.7e-08 62.8 356 22.5
Gohir.D01G023577 Gossypium hirsutum HOM05D007162 ORTHO05D007631 6.7e-08 62.8 380 20.5
Lalb_Chr16g0386521 Lupinus albus HOM05D002420 ORTHO05D002422 8.8e-08 62.4 307 20.8
MBI19_g03280_MAGBIO Magnolia biondii HOM05D002153 ORTHO05D002137 1.1e-07 62.0 356 21.6
HPP92_017256 Vanilla planifolia HOM05D007162 ORTHO05D007631 1.1e-07 62.0 398 20.1
AUR62032769 Chenopodium quinoa HOM05D007162 ORTHO05D007631 1.5e-07 61.6 311 22.5
Duzib147G0480 Durio zibethinus HOM05D002420 ORTHO05D002422 1.5e-07 61.6 219 26.5
Sc06g0004600 Simmondsia chinensis HOM05D022095 ORTHO05D009360 1.5e-07 61.6 139 30.9
Duzib147G0753 Durio zibethinus HOM05D002420 ORTHO05D002422 2.0e-07 61.2 276 24.6
Migut.H02492 Erythranthe guttata HOM05D002420 ORTHO05D002422 2.0e-07 61.2 112 33.9
FvH4_1g13490 Fragaria vesca HOM05D002420 ORTHO05D002422 2.0e-07 61.2 203 27.1
FAN19G1318 Fragaria x ananassa HOM05D002420 ORTHO05D002422 2.0e-07 61.2 203 27.1
Lj4g0009025 Lotus japonicus HOM05D002420 ORTHO05D002422 2.0e-07 61.2 224 26.8
BraA02t08804Z Brassica rapa HOM05D007162 ORTHO05D007631 2.5e-07 60.8 338 24.0
Actinidia08199 Actinidia chinensis HOM05D007822 ORTHO05D009360 3.3e-07 60.5 107 33.6
Duzib177G0294 Durio zibethinus HOM05D000664 ORTHO05D000491 3.3e-07 60.5 204 25.5
RcHm_v2.0_Chr5g0059531 Rosa chinensis HOM05D000664 ORTHO05D000491 3.3e-07 60.5 211 30.3
SalBow8G4721 Salvia bowleyana HOM05D007162 ORTHO05D007631 4.3e-07 60.1 320 20.3
Ciclev10025934m.g Citrus clementina HOM05D002420 ORTHO05D002422 5.7e-07 59.7 198 27.8
FAN12G3043 Fragaria x ananassa HOM05D007162 ORTHO05D007631 5.7e-07 59.7 356 22.8
Gohir.D12G065250 Gossypium hirsutum HOM05D002420 ORTHO05D002422 5.7e-07 59.7 202 26.7
Duzib177G1102 Durio zibethinus HOM05D000664 ORTHO05D000491 7.4e-07 59.3 211 27.0
Medtr3g070037 Medicago truncatula HOM05D007822 ORTHO05D009360 7.4e-07 59.3 49 55.1
CSS0031662 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 9.7e-07 58.9 209 28.2
Cc07_g09370 Coffea canephora HOM05D002420 ORTHO05D002422 9.7e-07 58.9 180 28.9
Manes.18G080700 Manihot esculenta HOM05D002420 ORTHO05D002422 9.7e-07 58.9 205 24.9
PGR031G2441 Punica granatum HOM05D007162 ORTHO05D007631 9.7e-07 58.9 307 21.8
CiPaw.01G134400 Carya illinoinensis HOM05D007162 ORTHO05D007631 1.3e-06 58.5 353 22.7
Migut.N00599 Erythranthe guttata HOM05D000007 ORTHO05D005385 1.3e-06 58.5 243 25.5
A02p38240 Brassica napus HOM05D007162 ORTHO05D007631 1.7e-06 58.2 340 23.8
COL.COLO4_22098 Corchorus olitorius HOM05D002420 ORTHO05D002422 1.7e-06 58.2 205 25.9
Dinv39969 Davidia involucrata HOM05D002420 ORTHO05D002422 1.7e-06 58.2 207 25.6
BcaB07g34165 Brassica carinata HOM05D007162 ORTHO05D007631 2.2e-06 57.8 364 23.1
Gorai.008G068500 Gossypium raimondii HOM05D002420 ORTHO05D002422 2.2e-06 57.8 223 26.9
Medtr7g070440 Medicago truncatula HOM05D000007 ORTHO05D000017 2.2e-06 57.8 324 23.1
Manes.18G080500 Manihot esculenta HOM05D002420 ORTHO05D002422 2.8e-06 57.4 239 26.4
Potri.007G027200 Populus trichocarpa HOM05D002420 ORTHO05D002422 2.8e-06 57.4 123 31.7
SGA_v2.0_scaffold47G17662 Striga asiatica HOM05D002420 ORTHO05D002422 2.8e-06 57.4 207 24.6
CSS0006010 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 3.7e-06 57.0 209 27.3
PSO536G0001 Papaver somniferum HOM05D000007 ORTHO05D000017 3.7e-06 57.0 328 22.3
PSO832G1012 Papaver somniferum HOM05D000007 ORTHO05D000017 3.7e-06 57.0 328 22.3
PSO832G3836 Papaver somniferum HOM05D000007 ORTHO05D000017 3.7e-06 57.0 328 22.3
QL03p005922 Quercus lobata HOM05D000007 ORTHO05D000039 3.7e-06 57.0 406 20.7
QL04p064442 Quercus lobata HOM05D000007 ORTHO05D000039 3.7e-06 57.0 406 20.7
Gorai.007G204200 Gossypium raimondii HOM05D002420 ORTHO05D002422 4.8e-06 56.6 198 26.3
Gorai.010G008800 Gossypium raimondii HOM05D000007 ORTHO05D000017 4.8e-06 56.6 227 26.9
PSO170G0618 Papaver somniferum HOM05D000664 ORTHO05D000491 4.8e-06 56.6 229 24.5
CANSAT01G0893 Cannabis sativa HOM05D002420 ORTHO05D002422 8.2e-06 55.8 114 34.2
Cc09_g00810 Coffea canephora HOM05D000007 ORTHO05D000017 8.2e-06 55.8 326 27.0
HanXRQChr04g0121411 Helianthus annuus HOM05D001729 ORTHO05D001155 8.2e-06 55.8 327 23.5
PSO675G7943 Papaver somniferum HOM05D000664 ORTHO05D000491 8.2e-06 55.8 216 25.5
vmacro17325 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 8.2e-06 55.8 299 24.7


User provided reference genes

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