Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 1.1e-262 909.4 448 100.0
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 1.1e-224 783.1 447 87.0
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 5.9e-213 744.2 484 78.9
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 5.5e-203 711.1 459 76.5
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 2.3e-201 705.7 446 77.4
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 4.1e-198 694.9 436 78.4
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 1.2e-194 683.3 471 74.3
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 8.2e-191 670.6 403 80.9
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 7.5e-184 647.5 516 65.7
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 9.8e-184 647.1 491 67.6
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 7.5e-176 620.9 410 74.4
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 1.3e-175 620.2 392 75.5
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 3.1e-174 615.5 397 73.0
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 3.5e-173 612.1 398 72.6
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 4.5e-173 611.7 393 74.0
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 2.3e-172 609.4 413 70.9
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 5.0e-172 608.2 411 71.0
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 1.1e-171 607.1 391 73.1
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 4.3e-171 605.1 392 74.2
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 2.3e-169 599.4 422 69.2
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 2.3e-169 599.4 391 72.6
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 6.8e-169 597.8 393 71.8
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 8.9e-169 597.4 402 69.4
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 8.9e-169 597.4 413 70.0
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 2.6e-168 595.9 401 71.3
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 4.4e-168 595.1 419 67.8
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 4.4e-168 595.1 410 70.2
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 7.5e-168 594.3 392 72.7
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 3.2e-166 589.0 392 71.7
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 9.2e-166 587.4 407 69.8
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 2.0e-165 586.3 391 72.9
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 2.0e-165 586.3 415 69.9
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 1.3e-164 583.6 407 69.8
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 1.7e-164 583.2 411 68.4
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 2.3e-164 582.8 390 70.8
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 1.1e-163 580.5 394 72.1
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 1.5e-163 580.1 454 65.9
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 1.5e-163 580.1 419 66.3
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 1.6e-162 576.6 408 68.1
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 8.0e-162 574.3 403 69.2
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 1.1e-161 573.9 394 69.0
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 1.4e-161 573.5 391 70.6
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 3.1e-161 572.4 408 67.6
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 6.8e-161 571.2 393 69.5
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 6.8e-161 571.2 420 65.5
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 8.9e-161 570.9 392 68.4
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 8.9e-161 570.9 401 68.1
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 1.2e-160 570.5 390 70.3
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 4.4e-160 568.5 401 67.8
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 5.8e-160 568.2 438 64.8
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 9.8e-160 567.4 401 67.6
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 9.8e-160 567.4 392 70.9
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 4.9e-159 565.1 419 65.6
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 1.1e-158 563.9 404 67.8
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 1.1e-158 563.9 408 67.6
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 4.1e-158 562.0 390 68.5
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.6e-157 560.1 390 68.2
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 3.5e-157 558.9 410 66.6
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 6.0e-157 558.1 415 66.0
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 8.6e-156 554.3 408 64.7
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 1.1e-155 553.9 426 65.3
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 3.3e-155 552.4 392 66.8
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 4.3e-155 552.0 424 63.0
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 2.3e-153 546.2 376 69.1
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 3.1e-153 545.8 396 67.9
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 6.8e-153 544.7 394 68.5
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 2.0e-152 543.1 428 63.3
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 2.6e-152 542.7 397 66.0
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 4.4e-152 542.0 428 63.8
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 4.4e-152 542.0 414 63.8
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 1.7e-151 540.0 394 67.0
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 2.9e-151 539.3 409 63.6
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 4.9e-151 538.5 422 62.6
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 1.1e-150 537.3 394 67.0
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 2.4e-150 536.2 412 65.0
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 9.2e-150 534.3 394 66.5
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 7.8e-149 531.2 394 66.8
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 7.8e-149 531.2 394 66.8
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 1.7e-148 530.0 443 59.1
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 5.6e-147 525.0 393 65.6
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 5.6e-147 525.0 392 65.6
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 2.8e-146 522.7 431 61.5
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 6.2e-146 521.5 358 70.9
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 8.4e-143 511.1 390 65.9
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 2.5e-139 499.6 394 63.5
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 9.6e-139 497.7 328 70.7
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 5.4e-134 481.9 358 66.8
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 1.5e-128 463.8 330 66.4
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 7.6e-128 461.5 328 66.8
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 3.8e-127 459.1 329 63.8
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 6.4e-127 458.4 303 71.6
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 6.0e-125 451.8 398 55.5
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 3.9e-124 449.1 328 66.2
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 2.5e-123 446.4 392 57.4
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 2.2e-119 433.3 387 54.5
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 2.7e-117 426.4 341 63.6
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 7.9e-117 424.9 446 54.3
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 3.7e-114 416.0 279 69.5
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.9e-110 403.7 418 50.7
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 7.9e-109 398.3 323 61.9
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 2.8e-106 389.8 381 52.0
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 5.3e-105 385.6 305 63.3
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 3.8e-103 379.4 283 65.0
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 7.9e-101 371.7 283 64.3
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 7.9e-101 371.7 283 64.3
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 2.2e-98 363.6 213 80.3
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.6e-91 340.1 241 67.2
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 5.5e-86 322.4 251 63.7
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 6.1e-85 318.9 237 66.7
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 1.8e-84 317.4 439 42.6
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 1.1e-73 281.6 347 45.8
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 2.0e-72 277.3 188 70.2
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 1.7e-66 257.7 148 86.5
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 1.5e-59 234.6 179 66.5
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 3.3e-54 216.9 395 36.7
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 1.8e-52 211.1 169 61.5
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 4.9e-50 203.0 159 63.5
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 8.3e-50 202.2 145 65.5
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 3.2e-49 200.3 243 45.3
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 7.0e-49 199.1 166 59.0
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 3.3e-38 163.7 154 55.8
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 5.6e-38 162.9 428 29.2
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 7.3e-38 162.5 435 30.3
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 4.4e-35 153.3 443 28.9
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.6e-32 144.8 442 26.9
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 2.1e-32 144.4 415 28.0
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 3.8e-26 123.6 78 69.2
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 4.9e-26 123.2 87 65.5
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 1.9e-25 121.3 80 70.0
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 1.7e-23 114.8 235 35.7
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 1.1e-22 112.1 107 49.5
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 1.3e-21 108.6 396 27.3
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 1.1e-20 105.5 64 81.2
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 2.4e-20 104.4 82 67.1
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 1.0e-15 89.0 66 68.2
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 9.6e-14 82.4 79 54.4
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 1.3e-13 82.0 72 56.9
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 1.8e-07 61.6 37 75.7


User provided reference genes

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