Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 1.0e-41 172.9 83 100.0
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 7.9e-31 136.7 83 84.3
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 2.1e-23 112.1 85 67.1
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 3.6e-23 111.3 104 59.6
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 5.7e-21 104.0 83 66.3
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 9.7e-21 103.2 80 66.2
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 1.3e-20 102.8 78 64.1
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 1.7e-20 102.4 78 64.1
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 3.1e-19 98.2 80 66.2
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 5.9e-18 94.0 86 59.3
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 2.9e-17 91.7 58 74.1
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 6.1e-15 84.0 80 51.2
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 1.8e-14 82.4 60 63.3
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 2.3e-14 82.0 78 51.3
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 2.3e-14 82.0 80 50.0
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 5.2e-14 80.9 56 62.5
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 6.8e-14 80.5 53 66.0
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 2.0e-13 79.0 53 62.3
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 3.4e-13 78.2 53 62.3
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 4.4e-13 77.8 54 63.0
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 4.4e-13 77.8 53 67.9
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 5.7e-13 77.4 53 67.9
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 5.7e-13 77.4 53 64.2
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 7.5e-13 77.0 53 67.9
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 1.3e-12 76.3 52 65.4
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 1.3e-12 76.3 81 46.9
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 1.3e-12 76.3 53 66.0
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 1.7e-12 75.9 53 58.5
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 2.2e-12 75.5 53 64.2
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 2.2e-12 75.5 53 64.2
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 2.8e-12 75.1 52 63.5
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 2.8e-12 75.1 54 57.4
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 2.8e-12 75.1 54 57.4
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 2.8e-12 75.1 55 60.0
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 4.8e-12 74.3 54 61.1
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 6.3e-12 73.9 64 56.2
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 6.3e-12 73.9 54 57.4
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 1.1e-11 73.2 53 60.4
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 1.1e-11 73.2 49 59.2
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 1.4e-11 72.8 52 63.5
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 1.4e-11 72.8 53 58.5
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 1.8e-11 72.4 53 58.5
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 2.4e-11 72.0 54 66.7
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 2.4e-11 72.0 60 56.7
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 4.1e-11 71.2 53 56.6
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 5.4e-11 70.9 53 58.5
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 7.0e-11 70.5 53 58.5
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 7.0e-11 70.5 53 56.6
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 7.0e-11 70.5 53 56.6
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 9.1e-11 70.1 55 52.7
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 9.1e-11 70.1 60 55.0
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 1.6e-10 69.3 53 54.7
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.6e-10 69.3 53 54.7
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 1.6e-10 69.3 53 58.5
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 1.6e-10 69.3 60 51.7
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 2.0e-10 68.9 53 54.7
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 2.0e-10 68.9 53 54.7
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 3.5e-10 68.2 53 58.5
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 4.5e-10 67.8 53 56.6
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 4.5e-10 67.8 53 60.4
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 4.5e-10 67.8 53 54.7
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 4.5e-10 67.8 53 56.6
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.5e-10 67.8 53 52.8
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 5.9e-10 67.4 51 58.8
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 7.7e-10 67.0 76 44.7
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 2.2e-09 65.5 53 54.7
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 3.8e-09 64.7 55 54.5
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 5.0e-09 64.3 53 56.6
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 5.0e-09 64.3 49 59.2
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 5.0e-09 64.3 55 52.7
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 6.5e-09 63.9 49 57.1
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 6.5e-09 63.9 53 56.6
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 8.5e-09 63.5 53 54.7
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 8.5e-09 63.5 53 54.7
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 1.1e-08 63.2 59 49.2
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 1.1e-08 63.2 53 54.7
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 1.1e-08 63.2 53 54.7
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 1.5e-08 62.8 48 58.3
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 1.5e-08 62.8 55 47.3
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 1.5e-08 62.8 55 47.3
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 1.9e-08 62.4 53 52.8
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 1.9e-08 62.4 53 52.8
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 1.9e-08 62.4 53 52.8
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 2.5e-08 62.0 52 51.9
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 3.2e-08 61.6 43 58.1
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 3.2e-08 61.6 53 52.8
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 4.2e-08 61.2 42 57.1
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 2.1e-07 58.9 60 51.7
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 2.7e-07 58.5 39 59.0
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 4.7e-07 57.8 48 45.8
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 1.0e-06 56.6 40 60.0


User provided reference genes

Program Settings