Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 5.6e-147 524.2 262 100.0
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 2.4e-126 455.7 262 87.4
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 3.3e-115 418.7 259 81.5
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 2.1e-114 416.0 259 81.9
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 2.8e-114 415.6 247 83.4
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 2.6e-112 409.1 235 86.8
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 9.9e-112 407.1 276 75.0
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 1.7e-111 406.4 263 78.3
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 9.3e-110 400.6 252 77.4
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.6e-109 399.8 244 79.1
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 3.0e-108 395.6 295 71.2
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 3.9e-108 395.2 250 80.8
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 4.8e-106 388.3 239 77.4
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 2.4e-105 386.0 257 73.5
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 3.4e-104 382.1 251 74.5
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 1.0e-103 380.6 240 75.0
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 1.7e-103 379.8 262 71.0
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 2.9e-103 379.0 240 74.6
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 8.4e-103 377.5 231 75.8
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.9e-102 376.3 231 74.9
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 2.5e-102 375.9 254 70.1
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 5.5e-102 374.8 275 67.6
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 3.5e-101 372.1 247 71.3
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 3.5e-101 372.1 270 68.5
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 1.8e-100 369.8 277 65.0
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 2.3e-100 369.4 261 70.9
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 3.0e-100 369.0 284 65.1
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 5.1e-100 368.2 283 65.0
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 5.1e-100 368.2 279 65.2
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 5.1e-100 368.2 277 65.3
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 6.7e-100 367.9 263 74.9
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 6.7e-100 367.9 233 73.4
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 1.9e-99 366.3 248 69.8
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 1.9e-99 366.3 242 74.0
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 2.5e-99 365.9 251 68.9
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 4.3e-99 365.2 240 72.1
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 4.3e-99 365.2 240 72.1
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 5.7e-99 364.8 270 66.7
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 9.7e-99 364.0 260 68.5
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 1.3e-98 363.6 259 67.2
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 1.3e-98 363.6 279 67.4
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 1.6e-98 363.2 257 67.7
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.2e-98 362.8 270 65.9
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 4.8e-98 361.7 268 67.2
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 6.3e-98 361.3 261 67.8
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 6.3e-98 361.3 280 65.0
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 3.1e-97 359.0 221 74.7
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 4.1e-97 358.6 221 75.1
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 6.9e-97 357.8 273 64.5
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 6.9e-97 357.8 221 76.0
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 9.0e-97 357.5 263 66.9
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.5e-96 356.7 263 66.9
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 2.0e-96 356.3 274 65.0
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 2.6e-96 355.9 250 68.4
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 3.4e-96 355.5 265 69.1
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 3.4e-96 355.5 240 70.4
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 4.5e-96 355.1 258 67.8
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 5.9e-96 354.8 268 64.6
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 1.0e-95 354.0 221 74.2
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 1.0e-95 354.0 239 69.9
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 1.3e-95 353.6 246 67.5
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 1.3e-95 353.6 273 63.4
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 1.7e-95 353.2 263 65.8
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 2.2e-95 352.8 274 64.6
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 3.8e-95 352.1 237 70.5
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 3.8e-95 352.1 233 70.0
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 1.1e-94 350.5 247 68.4
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 1.4e-94 350.1 251 67.7
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 1.4e-94 350.1 239 70.3
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 1.9e-94 349.7 232 72.0
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 1.9e-94 349.7 269 64.7
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 1.9e-94 349.7 273 63.7
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 2.5e-94 349.4 233 69.1
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 2.5e-94 349.4 245 69.8
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 3.2e-94 349.0 221 78.3
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 4.2e-94 348.6 293 63.1
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 5.5e-94 348.2 247 68.0
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 5.5e-94 348.2 284 62.3
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 5.5e-94 348.2 278 64.7
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.2e-93 347.1 270 63.3
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 2.7e-93 345.9 241 66.8
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 6.1e-93 344.7 251 70.1
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 1.0e-92 344.0 233 70.8
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 1.0e-92 344.0 237 70.0
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 6.7e-92 341.3 276 62.0
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 1.1e-91 340.5 237 68.8
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 2.0e-91 339.7 260 64.6
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 2.5e-91 339.3 257 65.4
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 4.3e-91 338.6 272 63.6
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 7.4e-91 337.8 255 63.5
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 2.2e-90 336.3 255 63.1
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 1.5e-88 330.1 273 58.2
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 1.1e-86 323.9 273 59.7
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 4.1e-81 305.4 201 68.7
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 1.5e-80 303.5 234 63.2
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 3.8e-79 298.9 250 58.0
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 5.0e-79 298.5 183 76.0
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 1.4e-78 297.0 271 57.9
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 1.9e-78 296.6 228 63.6
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.9e-78 296.6 221 62.9
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 9.4e-78 294.3 238 62.2
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 4.7e-77 292.0 226 59.3
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 8.0e-77 291.2 234 59.0
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.4e-76 290.4 226 63.3
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 1.8e-76 290.0 296 52.0
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 3.0e-76 289.3 245 57.6
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 8.2e-74 281.2 223 61.0
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 2.4e-73 279.6 202 66.8
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.6e-72 276.9 183 69.9
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.2e-69 267.3 179 70.9
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 1.6e-69 266.9 175 72.6
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 8.0e-69 264.6 287 54.4
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 2.2e-63 246.5 163 71.8
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 9.8e-59 231.1 193 60.1
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 2.2e-58 229.9 233 51.5
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 1.6e-56 223.8 126 83.3
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 6.8e-52 208.4 148 72.3
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 3.7e-50 202.6 265 41.9
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 3.5e-48 196.1 113 85.0
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 1.9e-46 190.3 313 37.1
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 2.6e-43 179.9 300 38.0
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 7.5e-43 178.3 113 74.3
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.7e-42 177.2 272 41.9
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 2.3e-39 166.8 127 62.2
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 2.5e-30 136.7 116 56.9
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 9.5e-30 134.8 130 57.7
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 6.8e-28 128.6 77 79.2
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 7.6e-27 125.2 235 35.3
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 8.3e-26 121.7 77 75.3
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 1.9e-25 120.6 72 72.2
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 6.0e-24 115.5 81 66.7
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 8.4e-18 95.1 77 62.3
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 4.3e-14 82.8 56 66.1
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 3.8e-10 69.7 100 44.0


User provided reference genes

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