Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G038900 Phaseolus vulgaris HOM05D008997 ORTHO05D011051 1.2e-65 253.1 133 100.0
Phvul.002G121500 Phaseolus vulgaris HOM05D008997 ORTHO05D011051 6.3e-62 240.7 132 94.7
VMungo0464G1626 Vigna mungo HOM05D008997 ORTHO05D011051 9.0e-61 236.9 134 93.3
Glyma.11G090500 Glycine max HOM05D008997 ORTHO05D011051 5.7e-55 217.6 134 87.3
Psat2g145480 Pisum sativum HOM05D008997 ORTHO05D011051 2.0e-52 209.1 124 84.7
Ca_25045_v3 Cicer arietinum L. HOM05D008997 ORTHO05D011051 4.5e-52 208.0 129 82.2
Medtr5g025520 Medicago truncatula HOM05D008997 ORTHO05D011051 4.2e-50 201.4 127 80.3
Lalb_Chr09g0324991 Lupinus albus HOM05D008997 ORTHO05D011051 9.4e-50 200.3 129 78.3
Lj2g0013331 Lotus japonicus HOM05D008997 ORTHO05D011051 1.4e-48 196.4 127 82.7
Lalb_Chr05g0215081 Lupinus albus HOM05D008997 ORTHO05D011051 3.9e-48 194.9 129 76.0
TPR.G8981 Trifolium pratense HOM05D008997 ORTHO05D011051 2.1e-41 172.6 133 64.7
VMungo1215G3078 Vigna mungo HOM05D008997 ORTHO05D011051 5.0e-35 151.4 133 68.4
arahy.Tifrunner.gnm1.ann1.G1G4QR Arachis hypogaea HOM05D008997 ORTHO05D011051 3.6e-33 145.2 164 53.7
arahy.Tifrunner.gnm1.ann1.QSM4Y5 Arachis hypogaea HOM05D008997 ORTHO05D011051 3.6e-33 145.2 164 53.7
CiPaw.11G075100 Carya illinoinensis HOM05D008997 ORTHO05D011051 4.4e-23 111.7 132 53.0
QL12p004181 Quercus lobata HOM05D008997 ORTHO05D011051 2.5e-18 95.9 103 53.4
MD08G1001500 Malus domestica HOM05D008997 ORTHO05D011051 8.0e-17 90.9 114 46.5
MD15G1000800 Malus domestica HOM05D008997 ORTHO05D011051 1.0e-16 90.5 114 46.5
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 3.0e-16 89.0 124 46.0
Prupe.1G353500 Prunus persica HOM05D008997 ORTHO05D011051 3.0e-16 89.0 136 41.9
RcHm_v2.0_Chr6g0304331 Rosa chinensis HOM05D008997 ORTHO05D011051 4.0e-16 88.6 131 44.3
FAN21G1189 Fragaria x ananassa HOM05D008997 ORTHO05D011051 8.9e-16 87.4 124 45.2
FAN21G1803 Fragaria x ananassa HOM05D008997 ORTHO05D011051 8.9e-16 87.4 124 45.2
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 2.6e-15 85.9 124 44.4
Sed0009134 Sechium edule HOM05D008997 ORTHO05D011051 3.4e-15 85.5 95 45.3
FvH4_2g37377 Fragaria vesca HOM05D008997 ORTHO05D011051 1.3e-14 83.6 124 43.5
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.3e-14 83.6 128 43.0
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 4.9e-14 81.6 126 41.3
FAN21G1848 Fragaria x ananassa HOM05D008997 ORTHO05D011051 2.4e-13 79.3 139 41.0
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 4.1e-13 78.6 123 42.3
Ciclev10013116m.g Citrus clementina HOM05D008997 ORTHO05D011051 7.0e-13 77.8 70 52.9
Atru.chr8.2628 Acer truncatum HOM05D008997 ORTHO05D011051 1.6e-12 76.6 92 45.7
PGR031G0389 Punica granatum HOM05D008997 ORTHO05D011051 5.9e-12 74.7 99 37.4
Eucgr.D02561 Eucalyptus grandis HOM05D008997 ORTHO05D011051 1.3e-11 73.6 69 50.7
COL.COLO4_11281 Corchorus olitorius HOM05D008997 ORTHO05D011051 6.6e-11 71.2 99 39.4
FAN27G1108 Fragaria x ananassa HOM05D008997 ORTHO05D011051 1.1e-10 70.5 139 38.1
Sabra05G0064400 Salix brachista HOM05D008997 ORTHO05D011051 1.2e-09 67.0 73 43.8
Glyma.01G154200 Glycine max HOM05D000827 ORTHO05D001318 1.6e-09 66.6 85 41.2
Glyma.11G090400 Glycine max HOM05D000827 ORTHO05D001318 1.6e-09 66.6 85 41.2
Ca_25044_v3 Cicer arietinum L. HOM05D000827 ORTHO05D001318 3.6e-09 65.5 97 37.1
Thecc.03G319000 Theobroma cacao HOM05D008997 ORTHO05D011051 3.6e-09 65.5 73 42.5
THA.LOC104798526 Tarenaya hassleriana HOM05D013199 ORTHO05D015353 4.7e-09 65.1 101 37.6
Potri.005G078400 Populus trichocarpa HOM05D008997 ORTHO05D011051 2.3e-08 62.8 110 34.5
Lj2g0023362 Lotus japonicus HOM05D000827 ORTHO05D001318 5.2e-08 61.6 90 36.7
Manes.10G091000 Manihot esculenta HOM05D008997 ORTHO05D011051 5.2e-08 61.6 66 43.9
AL4G31640 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 1.2e-07 60.5 83 37.3
Haze_08436 Corylus avellana HOM05D000827 ORTHO05D001318 1.5e-07 60.1 95 31.6
TAR629G0081 Trochodendron aralioides HOM05D000827 ORTHO05D001318 1.5e-07 60.1 83 34.9
Thhalv10017454m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 2.6e-07 59.3 83 36.1
AT2G35605 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 4.4e-07 58.5 100 34.0
vmacro13599 Vaccinium macrocarpon HOM05D000827 ORTHO05D001318 4.4e-07 58.5 78 38.5
Ciclev10033040m.g Citrus clementina HOM05D000827 ORTHO05D001318 5.8e-07 58.2 82 35.4
Nitab4.5_0000792g0150 Nicotiana tabacum HOM05D000827 ORTHO05D001318 5.8e-07 58.2 78 38.5
Cfa012293 Carpinus fangiana HOM05D000827 ORTHO05D001318 7.5e-07 57.8 79 34.2
THA.LOC104814391 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 7.5e-07 57.8 101 34.7
Medtr5g025500 Medicago truncatula HOM05D000827 ORTHO05D001318 9.8e-07 57.4 77 37.7
TWI32G0689 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 9.8e-07 57.4 78 39.7
CSS0035225 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 1.3e-06 57.0 78 37.2
Lalb_Chr05g0215071 Lupinus albus HOM05D000827 ORTHO05D001318 1.3e-06 57.0 94 35.1
TWI34G0874 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 1.3e-06 57.0 89 38.2
CARHR018110 Cardamine hirsuta HOM05D013199 ORTHO05D015353 1.7e-06 56.6 68 42.6
Cc08_g05790 Coffea canephora HOM05D000827 ORTHO05D001318 1.7e-06 56.6 96 34.4
QL04p053399 Quercus lobata HOM05D000827 ORTHO05D001318 1.7e-06 56.6 78 37.2
CSS0043160 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 2.2e-06 56.2 91 36.3
Ciclev10013159m.g Citrus clementina HOM05D000827 ORTHO05D001318 2.2e-06 56.2 105 31.4
Potri.009G092200 Populus trichocarpa HOM05D000827 ORTHO05D001318 2.2e-06 56.2 98 34.7
CANSAT80G2464 Cannabis sativa HOM05D000827 ORTHO05D001318 2.9e-06 55.8 96 33.3
Lalb_Chr16g0380361 Lupinus albus HOM05D000827 ORTHO05D001318 2.9e-06 55.8 92 32.6
SGA_v2.0_scaffold98G29374 Striga asiatica HOM05D000827 ORTHO05D001318 2.9e-06 55.8 80 35.0
CSS0035652 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 3.7e-06 55.5 78 35.9
CSS0045636 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 3.7e-06 55.5 78 35.9
Gohir.D11G237200 Gossypium hirsutum HOM05D000827 ORTHO05D001318 4.9e-06 55.1 78 37.2
Gorai.007G250300 Gossypium raimondii HOM05D000827 ORTHO05D001318 4.9e-06 55.1 78 37.2
TPR.G8987 Trifolium pratense HOM05D000827 ORTHO05D001318 4.9e-06 55.1 77 36.4
Actinidia05830 Actinidia chinensis HOM05D000827 ORTHO05D001318 6.4e-06 54.7 63 38.1
Gohir.A08G149400 Gossypium hirsutum HOM05D000827 ORTHO05D001318 6.4e-06 54.7 79 35.4
Phvul.002G121400 Phaseolus vulgaris HOM05D000827 ORTHO05D001318 6.4e-06 54.7 95 34.7
Potri.001G297400 Populus trichocarpa HOM05D000827 ORTHO05D001318 6.4e-06 54.7 96 30.2
Sp1g27440 Schrenkiella parvula HOM05D000827 ORTHO05D001318 6.4e-06 54.7 102 35.3
Cfa003700 Carpinus fangiana HOM05D000827 ORTHO05D001318 8.3e-06 54.3 107 31.8
HanXRQChr01g0025031 Helianthus annuus HOM05D000827 ORTHO05D001318 8.3e-06 54.3 79 35.4
Nitab4.5_0006785g0040 Nicotiana tabacum HOM05D000827 ORTHO05D001318 8.3e-06 54.3 78 35.9
Sabra09G0070900 Salix brachista HOM05D000827 ORTHO05D001318 8.3e-06 54.3 98 32.7
GSVIVG01019325001 Vitis vinifera HOM05D000827 ORTHO05D001318 8.3e-06 54.3 77 37.7


User provided reference genes

Program Settings