Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G031300 Phaseolus vulgaris HOM05D004339 ORTHO05D002389 2.7e-57 227.3 502 100.0
VMungo0464G1715 Vigna mungo HOM05D004339 ORTHO05D002389 1.1e-45 188.7 134 73.9
Glyma.19G025400 Glycine max HOM05D004339 ORTHO05D002389 1.0e-32 145.6 130 62.3
Lalb_Chr21g0318581 Lupinus albus HOM05D004339 ORTHO05D002389 8.2e-30 136.0 137 59.1
Psat1g070960 Pisum sativum HOM05D004339 ORTHO05D002389 1.2e-28 132.1 106 64.2
Lj2g0019168 Lotus japonicus HOM05D004339 ORTHO05D002389 1.5e-28 131.7 130 58.5
Glyma.13G061100 Glycine max HOM05D004339 ORTHO05D002389 3.8e-27 127.1 135 62.2
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea HOM05D004339 ORTHO05D002389 2.1e-25 121.3 112 58.9
Potri.017G087200 Populus trichocarpa HOM05D004339 ORTHO05D002389 3.6e-25 120.6 135 53.3
arahy.Tifrunner.gnm1.ann1.AUQB01 Arachis hypogaea HOM05D004339 ORTHO05D002389 6.1e-25 119.8 112 58.0
SGA_v2.0_scaffold413G51176 Striga asiatica HOM05D004339 ORTHO05D002389 6.1e-25 119.8 131 55.0
Hma1.2p1_0409F.1_g146740 Hydrangea macrophylla HOM05D004339 ORTHO05D002389 1.0e-24 119.0 99 62.6
Rhsim08G0071400 Rhododendron simsii HOM05D004339 ORTHO05D002389 1.0e-24 119.0 118 55.1
Dinv11507 Davidia involucrata HOM05D004339 ORTHO05D002389 1.4e-24 118.6 146 52.1
Medtr6g012780 Medicago truncatula HOM05D004339 ORTHO05D002389 1.8e-24 118.2 147 49.7
TPR.G8812 Trifolium pratense HOM05D004339 ORTHO05D002389 1.8e-24 118.2 95 63.2
Migut.H00679 Erythranthe guttata HOM05D004339 ORTHO05D002389 3.0e-24 117.5 136 52.9
Solyc02g088260.3 Solanum lycopersicum HOM05D004339 ORTHO05D002389 3.0e-24 117.5 146 50.7
Sopen02g032940 Solanum pennellii HOM05D004339 ORTHO05D002389 3.0e-24 117.5 146 50.7
Lalb_Chr02g0159271 Lupinus albus HOM05D004339 ORTHO05D002389 6.7e-24 116.3 95 62.1
Lju41A9T72 Lonicera japonica HOM05D004339 ORTHO05D002389 2.0e-23 114.8 136 51.5
Cc07_g03620 Coffea canephora HOM05D004339 ORTHO05D002389 3.3e-23 114.0 127 52.8
Nitab4.5_0000568g0190 Nicotiana tabacum HOM05D004339 ORTHO05D002389 3.3e-23 114.0 115 57.4
TWI34G0816 Tripterygium wilfordii HOM05D004339 ORTHO05D002389 3.3e-23 114.0 123 55.3
TWI34G1400 Tripterygium wilfordii HOM05D004339 ORTHO05D002389 3.3e-23 114.0 123 55.3
TWI32G0780 Tripterygium wilfordii HOM05D004339 ORTHO05D002389 9.7e-23 112.5 129 55.0
Hund13187 Selenicereus undatus HOM05D004339 ORTHO05D002389 1.3e-22 112.1 151 48.3
PGSC0003DMG400001431 Solanum tuberosum HOM05D004339 ORTHO05D002389 1.3e-22 112.1 158 47.5
PGSC0003DMG400025147 Solanum tuberosum HOM05D004339 ORTHO05D002389 1.3e-22 112.1 151 47.7
AL7G50740 Arabidopsis lyrata HOM05D004339 ORTHO05D002389 2.8e-22 110.9 121 56.2
Nitab4.5_0001591g0190 Nicotiana tabacum HOM05D004339 ORTHO05D002389 2.8e-22 110.9 114 56.1
Potri.004G127400 Populus trichocarpa HOM05D004339 ORTHO05D002389 3.7e-22 110.5 136 51.5
Sabra17G0077000 Salix brachista HOM05D004339 ORTHO05D002389 4.8e-22 110.2 110 57.3
vmacro18177 Vaccinium macrocarpon HOM05D004339 ORTHO05D002389 8.2e-22 109.4 95 58.9
CAN.G979.4 Capsicum annuum HOM05D004339 ORTHO05D002389 1.4e-21 108.6 134 52.2
CiPaw.04G015000 Carya illinoinensis HOM05D004339 ORTHO05D002389 1.8e-21 108.2 100 60.0
Nitab4.5_0010283g0040 Nicotiana tabacum HOM05D004339 ORTHO05D002389 2.4e-21 107.8 69 75.4
QL02p084787 Quercus lobata HOM05D004339 ORTHO05D002389 2.4e-21 107.8 111 56.8
Sp7g02420 Schrenkiella parvula HOM05D004339 ORTHO05D002389 2.4e-21 107.8 112 58.0
Actinidia17562 Actinidia chinensis HOM05D004339 ORTHO05D002389 3.1e-21 107.5 152 45.4
CiPaw.03G023900 Carya illinoinensis HOM05D004339 ORTHO05D002389 3.1e-21 107.5 124 54.0
TAR374G0423 Trochodendron aralioides HOM05D004339 ORTHO05D002389 4.1e-21 107.1 134 48.5
Sabra04G0090600 Salix brachista HOM05D004339 ORTHO05D002389 7.0e-21 106.3 136 49.3
Aa31LG2G4120 Aethionema arabicum HOM05D004339 ORTHO05D002389 9.1e-21 105.9 109 52.3
Aa31LG9G16500 Aethionema arabicum HOM05D004339 ORTHO05D002389 9.1e-21 105.9 119 52.1
AT3G29075 Arabidopsis thaliana HOM05D004339 ORTHO05D002389 9.1e-21 105.9 108 54.6
CARHR262720 Cardamine hirsuta HOM05D004339 ORTHO05D002389 1.2e-20 105.5 114 56.1
BcaC03g17550 Brassica carinata HOM05D004339 ORTHO05D002389 1.5e-20 105.1 106 53.8
BolC2t11577H Brassica oleracea HOM05D004339 ORTHO05D002389 1.5e-20 105.1 106 55.7
Oeu000842.1 Olea europaea HOM05D004339 ORTHO05D002389 1.5e-20 105.1 133 49.6
Nitab4.5_0000212g0100 Nicotiana tabacum HOM05D004339 ORTHO05D002389 2.0e-20 104.8 69 73.9
ClCG10G015320 Citrullus lanatus HOM05D004339 ORTHO05D002389 2.6e-20 104.4 121 53.7
Ciclev10011817m.g Citrus clementina HOM05D004339 ORTHO05D002389 2.6e-20 104.4 112 58.9
A02p36320 Brassica napus HOM05D004339 ORTHO05D002389 3.5e-20 104.0 106 53.8
BraA02t08631Z Brassica rapa HOM05D004339 ORTHO05D002389 3.5e-20 104.0 106 53.8
Duzib264G0373 Durio zibethinus HOM05D004339 ORTHO05D002389 3.5e-20 104.0 110 53.6
C02p55290 Brassica napus HOM05D004339 ORTHO05D002389 4.5e-20 103.6 106 54.7
Thhalv10027782m.g Eutrema salsugineum HOM05D004339 ORTHO05D002389 5.9e-20 103.2 112 56.2
Peaxi162Scf00629g00015 Petunia axillaris HOM05D004339 ORTHO05D002389 5.9e-20 103.2 145 46.2
Sed0004307 Sechium edule HOM05D004339 ORTHO05D002389 5.9e-20 103.2 132 50.8
Sopen02g016320 Solanum pennellii HOM05D004339 ORTHO05D002389 5.9e-20 103.2 162 43.8
BcaC06g33669 Brassica carinata HOM05D004339 ORTHO05D002389 1.0e-19 102.4 87 57.5
C07p37990 Brassica napus HOM05D004339 ORTHO05D002389 1.0e-19 102.4 87 57.5
COL.COLO4_10350 Corchorus olitorius HOM05D004339 ORTHO05D002389 1.0e-19 102.4 107 56.1
Solyc02g067150.4 Solanum lycopersicum HOM05D004339 ORTHO05D002389 1.0e-19 102.4 162 43.2
BcaC06g30878 Brassica carinata HOM05D004339 ORTHO05D002389 1.3e-19 102.1 109 53.2
AL5G18970 Arabidopsis lyrata HOM05D004339 ORTHO05D002389 1.7e-19 101.7 111 54.1
EL10Ac3g07125 Beta vulgaris HOM05D004339 ORTHO05D002389 1.7e-19 101.7 141 46.1
A04p12300 Brassica napus HOM05D004339 ORTHO05D002389 1.7e-19 101.7 110 52.7
Ca_04851_v3 Cicer arietinum L. HOM05D004339 ORTHO05D002389 1.7e-19 101.7 92 57.6
Aqoxy7G01875 Aquilegia oxysepala HOM05D004339 ORTHO05D002389 2.2e-19 101.3 107 53.3
BcaC04g22014 Brassica carinata HOM05D004339 ORTHO05D002389 2.9e-19 100.9 110 52.7
C09p24610 Brassica napus HOM05D004339 ORTHO05D002389 2.9e-19 100.9 110 52.7
CANSAT64G0152 Cannabis sativa HOM05D004339 ORTHO05D002389 2.9e-19 100.9 124 51.6
Cfa007586 Carpinus fangiana HOM05D004339 ORTHO05D002389 2.9e-19 100.9 70 70.0
Manes.02G048440 Manihot esculenta HOM05D004339 ORTHO05D002389 2.9e-19 100.9 128 48.4
THA.LOC104805480 Tarenaya hassleriana HOM05D004339 ORTHO05D002389 2.9e-19 100.9 105 57.1
GSVIVG01011458001 Vitis vinifera HOM05D004339 ORTHO05D002389 2.9e-19 100.9 70 71.4
BcaB06g27342 Brassica carinata HOM05D004339 ORTHO05D002389 5.0e-19 100.1 112 52.7
C04p45980 Brassica napus HOM05D004339 ORTHO05D002389 5.0e-19 100.1 119 47.9
BolC4t26181H Brassica oleracea HOM05D004339 ORTHO05D002389 5.0e-19 100.1 119 47.9
DCAR_025385 Daucus carota HOM05D004339 ORTHO05D002389 5.0e-19 100.1 129 48.1
Lju41A9G72 Lonicera japonica HOM05D004339 ORTHO05D002389 6.5e-19 99.8 136 47.1
BcaB07g30098 Brassica carinata HOM05D004339 ORTHO05D002389 8.5e-19 99.4 116 50.9
Cpa.g.sc14.110 Carica papaya HOM05D004339 ORTHO05D002389 8.5e-19 99.4 106 57.5
Haze_14501 Corylus avellana HOM05D004339 ORTHO05D002389 1.1e-18 99.0 87 60.9
CsaV3_3G041180 Cucumis sativus L. HOM05D004339 ORTHO05D002389 1.1e-18 99.0 110 55.5
Sc10g0003440 Simmondsia chinensis HOM05D004339 ORTHO05D002389 1.1e-18 99.0 131 51.1
AUR62024487 Chenopodium quinoa HOM05D004339 ORTHO05D002389 1.5e-18 98.6 140 45.7
Carub.0007s3638 Capsella rubella HOM05D004339 ORTHO05D002389 1.9e-18 98.2 113 53.1
HanXRQChr14g0448551 Helianthus annuus HOM05D004339 ORTHO05D002389 1.9e-18 98.2 127 46.5
Hma1.2p1_1191F.1_g265440 Hydrangea macrophylla HOM05D004339 ORTHO05D002389 1.9e-18 98.2 104 53.8
Peaxi162Scf00166g01032 Petunia axillaris HOM05D004339 ORTHO05D002389 1.9e-18 98.2 98 55.1
BolC7t44320H Brassica oleracea HOM05D004339 ORTHO05D002389 2.5e-18 97.8 87 55.2
Lsat_1_v5_gn_2_90061 Lactuca sativa HOM05D004339 ORTHO05D002389 2.5e-18 97.8 137 50.4
Manes.01G101300 Manihot esculenta HOM05D004339 ORTHO05D002389 2.5e-18 97.8 88 58.0
MSTRG.3030 Avicennia marina HOM05D004339 ORTHO05D002389 3.2e-18 97.4 140 46.4
BcaB02g07977 Brassica carinata HOM05D004339 ORTHO05D002389 3.2e-18 97.4 110 50.9
CSS0006568 Camellia sinensis var. sinensis HOM05D004339 ORTHO05D002389 3.2e-18 97.4 129 49.6
CSS0028300 Camellia sinensis var. sinensis HOM05D004339 ORTHO05D002389 3.2e-18 97.4 129 49.6
A06p40150 Brassica napus HOM05D004339 ORTHO05D002389 4.2e-18 97.1 102 51.0
BraA06t26930Z Brassica rapa HOM05D004339 ORTHO05D002389 4.2e-18 97.1 102 51.0
MD09G1054700 Malus domestica HOM05D004339 ORTHO05D002389 5.5e-18 96.7 88 56.8
unitig_21.g20933 Utricularia gibba HOM05D004339 ORTHO05D002389 5.5e-18 96.7 146 44.5
BcaC04g23848 Brassica carinata HOM05D004339 ORTHO05D002389 7.2e-18 96.3 94 54.3
C09p04180 Brassica napus HOM05D004339 ORTHO05D002389 7.2e-18 96.3 94 54.3
BolC9t53349H Brassica oleracea HOM05D004339 ORTHO05D002389 7.2e-18 96.3 94 54.3
THA.LOC104823070 Tarenaya hassleriana HOM05D004339 ORTHO05D002389 7.2e-18 96.3 142 45.1
MSTRG.23917 Avicennia marina HOM05D004339 ORTHO05D002389 9.4e-18 95.9 139 43.9
BcaB04g19502 Brassica carinata HOM05D004339 ORTHO05D002389 9.4e-18 95.9 94 54.3
Carub.0005s0780 Capsella rubella HOM05D004339 ORTHO05D002389 9.4e-18 95.9 95 54.7
AUR62026072 Chenopodium quinoa HOM05D004339 ORTHO05D002389 9.4e-18 95.9 140 43.6
RcHm_v2.0_Chr2g0167321 Rosa chinensis HOM05D004339 ORTHO05D002389 9.4e-18 95.9 120 50.0
BraA09t36033Z Brassica rapa HOM05D004339 ORTHO05D002389 1.2e-17 95.5 70 62.9
CARHR152260 Cardamine hirsuta HOM05D004339 ORTHO05D002389 1.6e-17 95.1 94 55.3
MELO3C009847.2 Cucumis melo HOM05D004339 ORTHO05D002389 1.6e-17 95.1 114 50.9
Oeu003254.1 Olea europaea HOM05D004339 ORTHO05D002389 1.6e-17 95.1 111 55.0
Duzib147G0137 Durio zibethinus HOM05D004339 ORTHO05D002389 3.6e-17 94.0 108 53.7
Thecc.04G087100 Theobroma cacao HOM05D004339 ORTHO05D002389 3.6e-17 94.0 109 54.1
Manes.02G048520 Manihot esculenta HOM05D004339 ORTHO05D002389 4.7e-17 93.6 114 50.9
Prupe.3G263800 Prunus persica HOM05D004339 ORTHO05D002389 4.7e-17 93.6 101 54.5
A09p03960 Brassica napus HOM05D004339 ORTHO05D002389 6.1e-17 93.2 70 61.4
MD17G1052800 Malus domestica HOM05D004339 ORTHO05D002389 1.0e-16 92.4 124 47.6
CAN.G206.175 Capsicum annuum HOM05D004339 ORTHO05D002389 1.4e-16 92.0 128 51.6
FAN09G1282 Fragaria x ananassa HOM05D004339 ORTHO05D002389 1.4e-16 92.0 107 52.3
PGR004G0671 Punica granatum HOM05D004339 ORTHO05D002389 1.4e-16 92.0 124 46.0
Oeu035937.1 Olea europaea HOM05D004339 ORTHO05D002389 2.3e-16 91.3 97 55.7
FvH4_6g48030 Fragaria vesca HOM05D004339 ORTHO05D002389 3.0e-16 90.9 107 53.3
FAN14G0777 Fragaria x ananassa HOM05D004339 ORTHO05D002389 3.0e-16 90.9 107 53.3
FAN02G2477 Fragaria x ananassa HOM05D004339 ORTHO05D002389 5.2e-16 90.1 107 52.3
Gohir.D07G212500 Gossypium hirsutum HOM05D004339 ORTHO05D002389 5.2e-16 90.1 105 54.3
Gorai.001G240600 Gossypium raimondii HOM05D004339 ORTHO05D002389 5.2e-16 90.1 105 54.3
Gohir.A07G206400 Gossypium hirsutum HOM05D004339 ORTHO05D002389 6.7e-16 89.7 107 53.3
ECA238G2462 Erigeron canadensis HOM05D004339 ORTHO05D002389 1.1e-15 89.0 95 50.5
FAN05G4997 Fragaria x ananassa HOM05D004339 ORTHO05D002389 3.3e-15 87.4 106 51.9
Eucgr.I02023 Eucalyptus grandis HOM05D004339 ORTHO05D002389 7.4e-15 86.3 91 51.6
Nn4g23264 Nelumbo nucifera HOM05D004339 ORTHO05D002389 1.3e-14 85.5 118 49.2
PSO063G6665 Papaver somniferum HOM05D004339 ORTHO05D002389 1.3e-14 85.5 137 40.9
PSO017G0491 Papaver somniferum HOM05D004339 ORTHO05D002389 4.1e-13 80.5 136 39.0
Manes.11G043001 Manihot esculenta HOM05D000085 ORTHO05D249837 9.1e-13 79.3 88 48.9
Prupe.3G263700 Prunus persica HOM05D004339 ORTHO05D002389 3.5e-12 77.4 110 45.5
HPP92_017447 Vanilla planifolia HOM05D004339 ORTHO05D002389 2.9e-11 74.3 110 49.1
MD09G1054800 Malus domestica HOM05D004339 ORTHO05D002389 5.0e-11 73.6 103 44.7
CDE04G0194 Ceratophyllum demersum HOM05D004339 ORTHO05D002389 6.5e-11 73.2 131 42.7
RcHm_v2.0_Chr2g0167311 Rosa chinensis HOM05D004339 ORTHO05D002389 1.5e-10 72.0 68 52.9
MD17G1052900 Malus domestica HOM05D004339 ORTHO05D002389 1.9e-10 71.6 59 59.3
HPP92_017452 Vanilla planifolia HOM05D004339 ORTHO05D002389 1.9e-10 71.6 102 48.0
Zm00001eb254420 Zea mays HOM05D004339 ORTHO05D002389 4.7e-09 67.0 53 60.4
MBI02_g14228_MAGBIO Magnolia biondii HOM05D004339 ORTHO05D002389 6.1e-09 66.6 97 44.3
CDE07G0818 Ceratophyllum demersum HOM05D004339 ORTHO05D002389 1.0e-08 65.9 130 37.7
Lsat_1_v5_gn_4_170381 Lactuca sativa HOM05D004339 ORTHO05D002389 3.0e-08 64.3 113 34.5
HanXRQChr09g0264261 Helianthus annuus HOM05D004339 ORTHO05D002389 4.0e-08 63.9 129 34.1
ATR0564G373 Amborella trichopoda HOM05D004339 ORTHO05D002389 6.8e-08 63.2 69 47.8
SHI01989 Sapria himalayana HOM05D004339 ORTHO05D002389 8.8e-08 62.8 68 47.1
DCAR_011081 Daucus carota HOM05D004339 ORTHO05D002389 1.2e-07 62.4 94 39.4
ECA232G3508 Erigeron canadensis HOM05D004339 ORTHO05D002389 5.7e-07 60.1 60 45.0
Gorai.006G014100 Gossypium raimondii HOM05D004339 ORTHO05D002389 7.5e-07 59.7 65 43.1
FAN21G3361 Fragaria x ananassa HOM05D007301 ORTHO05D002389 1.7e-06 58.5 66 50.0
Gohir.A09G013500 Gossypium hirsutum HOM05D004339 ORTHO05D002389 3.7e-06 57.4 65 41.5
Gohir.D09G012100 Gossypium hirsutum HOM05D004339 ORTHO05D002389 3.7e-06 57.4 57 47.4
Os02g0743600 Oryza sativa ssp. japonica HOM05D004339 ORTHO05D002389 3.7e-06 57.4 44 59.1
Os06g0232000 Oryza sativa ssp. japonica HOM05D004339 ORTHO05D002389 4.8e-06 57.0 110 36.4
FvH4_3g03190 Fragaria vesca HOM05D007301 ORTHO05D002389 8.3e-06 56.2 36 66.7


User provided reference genes

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