Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 1.6e-19 98.6 54 100.0
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 9.5e-17 89.4 54 87.0
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 4.1e-12 73.9 54 70.4
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 4.1e-12 73.9 54 70.4
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 5.4e-12 73.6 54 68.5
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 5.4e-12 73.6 54 68.5
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 9.2e-12 72.8 52 73.1
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 9.2e-12 72.8 51 76.5
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 1.3e-10 68.9 52 65.4
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 1.3e-10 68.9 54 72.2
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 1.3e-10 68.9 54 66.7
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 1.3e-10 68.9 54 66.7
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 1.3e-10 68.9 54 66.7
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 1.7e-10 68.6 51 68.6
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 2.9e-10 67.8 54 64.8
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 5.0e-10 67.0 54 63.0
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 8.6e-10 66.2 54 61.1
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 1.1e-09 65.9 54 64.8
Lalb_Chr06g0175261 Lupinus albus HOM05D008101 ORTHO05D010163 1.9e-09 65.1 47 72.3
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 2.5e-09 64.7 51 58.8
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 4.3e-09 63.9 51 56.9
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 4.3e-09 63.9 54 63.0
Nn3g17291 Nelumbo nucifera HOM05D008101 ORTHO05D010163 4.3e-09 63.9 48 70.8
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 4.3e-09 63.9 54 63.0
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 7.3e-09 63.2 53 62.3
FvH4_6g48300 Fragaria vesca HOM05D008101 ORTHO05D010163 7.3e-09 63.2 49 65.3
FAN09G0090 Fragaria x ananassa HOM05D008101 ORTHO05D010163 7.3e-09 63.2 49 65.3
FAN14G5148 Fragaria x ananassa HOM05D008101 ORTHO05D010163 7.3e-09 63.2 49 65.3
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.2e-08 62.4 54 64.8
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.2e-08 62.4 54 64.8
Lsat_1_v5_gn_4_179600 Lactuca sativa HOM05D008101 ORTHO05D010163 3.6e-08 60.8 48 58.3
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 4.7e-08 60.5 54 57.4
FAN09G1556 Fragaria x ananassa HOM05D008101 ORTHO05D010163 4.7e-08 60.5 48 64.6
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 4.7e-08 60.5 54 63.0
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 4.7e-08 60.5 51 60.8
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 8.0e-08 59.7 54 57.4
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 1.8e-07 58.5 53 60.4
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 1.8e-07 58.5 53 60.4
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 1.8e-07 58.5 53 60.4
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 1.8e-07 58.5 53 60.4
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 1.8e-07 58.5 54 57.4
FAN05G3293 Fragaria x ananassa HOM05D008101 ORTHO05D010163 2.3e-07 58.2 48 64.6
Rhsim10G0036400 Rhododendron simsii HOM05D018356 ORTHO05D010163 2.3e-07 58.2 49 57.1
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 4.0e-07 57.4 53 58.5
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 4.0e-07 57.4 53 58.5
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 4.0e-07 57.4 54 57.4
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 5.2e-07 57.0 53 58.5
FAN02G2446 Fragaria x ananassa HOM05D008101 ORTHO05D010163 5.2e-07 57.0 48 60.4
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 6.8e-07 56.6 53 56.6
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 6.8e-07 56.6 54 55.6
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 6.8e-07 56.6 50 60.0
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 2.0e-06 55.1 53 54.7
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 3.4e-06 54.3 53 54.7
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 3.4e-06 54.3 53 54.7
ClCG10G015220 Citrullus lanatus HOM05D008101 ORTHO05D010163 3.4e-06 54.3 50 58.0
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 4.4e-06 53.9 53 52.8
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 4.4e-06 53.9 53 54.7
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 4.4e-06 53.9 53 52.8
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 4.4e-06 53.9 53 52.8
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 5.8e-06 53.5 53 52.8
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 5.8e-06 53.5 53 52.8
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 7.5e-06 53.1 53 50.9
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 7.5e-06 53.1 53 52.8
FAN05G0138 Fragaria x ananassa HOM05D000576 ORTHO05D010163 7.5e-06 53.1 45 62.2
FAN23G1982 Fragaria x ananassa HOM05D000576 ORTHO05D010163 7.5e-06 53.1 45 62.2


User provided reference genes

Program Settings