Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 4353.1 2178 100.0
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 4058.4 2181 93.0
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 3749.5 2190 87.1
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 3323.5 2225 76.9
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 3226.4 2216 75.0
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 3195.6 2209 74.2
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 3190.6 2231 74.3
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 3176.3 2212 74.4
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 3168.3 2230 73.9
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 3155.5 2205 73.8
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 3148.6 2233 73.4
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2746.8 2230 64.3
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2722.2 2219 63.8
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2702.2 2228 63.2
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2639.0 2234 62.0
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2623.6 2239 62.4
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2585.1 2240 61.1
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2567.0 2234 61.4
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2561.6 2240 60.4
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2560.0 2241 61.4
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2558.9 2228 61.5
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2545.8 2227 59.9
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2541.9 2244 60.0
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2529.2 2214 60.1
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2526.1 2240 60.6
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2523.4 2243 60.7
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2519.2 2214 60.2
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2508.0 2233 60.1
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2497.2 2237 60.0
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2491.8 2239 59.8
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2482.6 2237 58.8
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2479.9 2241 59.1
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2479.1 2250 58.9
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2478.4 2237 58.7
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2474.1 2239 59.0
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2471.0 2248 59.2
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2459.1 2217 58.8
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2444.1 2230 58.3
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2431.8 2211 58.7
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2431.0 2233 58.2
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2403.6 2205 58.0
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2398.2 2225 57.4
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2374.7 2241 57.8
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2374.0 2213 57.0
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2369.7 2206 57.8
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2367.8 2232 56.9
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2366.7 2237 56.7
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2353.6 2244 57.0
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2345.1 2226 56.5
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2345.1 2239 57.1
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2337.8 2232 56.0
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2331.2 2245 56.3
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2319.7 2232 56.3
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2314.3 2270 56.0
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2313.9 2224 56.2
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2308.5 2224 57.4
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2307.3 2241 55.9
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2305.4 2220 56.4
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2297.3 2226 56.2
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2293.8 2224 57.1
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2288.1 2240 55.7
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2287.7 2220 56.5
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2285.0 2216 55.7
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2283.8 2243 54.8
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2280.0 2271 55.2
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2257.3 2206 55.1
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2254.9 2211 54.9
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2253.0 2208 54.7
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2253.0 2208 54.7
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2251.1 2213 54.9
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2249.9 2205 55.0
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2249.9 2205 55.0
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2247.6 2209 55.4
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2244.2 2204 54.8
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2243.8 2216 54.7
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2243.0 1892 61.6
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2237.6 2230 54.8
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2230.3 1834 63.2
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2203.7 1832 63.4
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2197.9 1821 62.5
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2137.5 2227 54.1
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2129.8 2203 53.0
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2080.8 2042 55.0
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2073.1 2313 50.8
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2019.6 1719 62.1
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 1989.9 2317 48.9
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1976.4 1097 91.2
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 1974.9 2235 50.4
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 1971.4 2229 50.7
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1797.3 2200 47.5
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1678.3 1426 63.1
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1663.7 2397 42.3
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1536.2 1703 50.5
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1441.0 1362 57.3
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1424.1 2350 39.1
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1396.7 2357 38.2
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1286.9 2171 38.8
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1269.6 2244 37.2
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1223.4 1209 55.3
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1167.1 1023 60.8
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 8.1e-308 1061.6 945 60.5
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 8.9e-307 1058.1 1063 54.7
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 2.9e-305 1053.1 1425 44.6
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 1.9e-256 891.0 2452 29.8
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 2.1e-239 834.3 1011 48.4
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 1.7e-236 824.7 793 56.6
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 2.2e-236 824.3 863 50.5
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 7.5e-205 719.5 1332 37.2
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 4.9e-196 690.3 747 50.7
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 7.3e-176 623.2 1004 40.0
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 1.3e-148 532.7 2166 26.2
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 2.2e-132 478.8 449 54.1
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 3.6e-82 312.0 374 49.5
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 6.2e-74 284.6 288 55.6
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 6.6e-68 264.6 319 48.9
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 2.5e-67 262.7 748 29.1
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.1e-61 243.0 309 45.3
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 6.2e-58 231.5 305 45.6
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 3.4e-56 225.7 138 82.6
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 4.6e-53 215.3 173 67.1
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 6.0e-53 214.9 234 50.4
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 7.4e-51 208.0 220 50.9
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 3.1e-49 202.6 111 91.9
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 5.7e-43 181.8 99 92.9
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 3.4e-40 172.6 269 39.8
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 1.3e-39 170.6 99 84.8
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 1.1e-33 151.0 284 35.2
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 4.5e-32 145.6 476 27.7
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.2e-31 143.3 210 42.9
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 8.8e-28 131.3 109 59.6
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 5.5e-22 112.1 140 45.0
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 5.0e-15 89.0 106 41.5
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 2.1e-13 83.6 387 23.8


User provided reference genes

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