Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 0.0e+00 2243.4 1133 100.0
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 0.0e+00 1953.3 1134 86.6
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 0.0e+00 1741.1 1136 79.1
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 0.0e+00 1438.3 938 79.0
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 1.6e-251 873.6 1161 45.0
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 8.6e-245 851.3 1171 43.7
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 1.1e-244 850.9 1171 43.5
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 3.1e-242 842.8 1168 43.1
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 1.6e-227 793.9 1172 40.9
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 2.1e-227 793.5 1172 42.3
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 2.1e-227 793.5 1158 41.5
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 2.6e-225 786.6 1173 42.3
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 6.4e-224 781.9 1166 41.7
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 8.4e-224 781.6 1170 40.5
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 5.4e-223 778.9 1159 40.9
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 4.0e-218 762.7 1142 41.2
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 1.4e-215 754.2 1166 40.4
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 3.9e-213 746.1 1155 40.6
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 7.4e-212 741.9 1159 40.6
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 5.3e-210 735.7 1155 39.7
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 2.0e-209 733.8 1161 39.0
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 4.5e-209 732.6 1186 39.7
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 4.5e-209 732.6 1158 39.6
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 1.0e-208 731.5 1187 39.8
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 2.9e-208 729.9 1152 40.4
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 6.5e-208 728.8 1162 39.8
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 6.5e-208 728.8 1168 39.5
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 7.1e-207 725.3 1157 39.3
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 6.3e-203 712.2 1158 38.8
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 4.1e-202 709.5 1167 39.8
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 2.6e-201 706.8 1158 39.4
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 7.9e-198 695.3 1157 38.0
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 5.7e-196 689.1 1162 38.6
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 1.3e-195 688.0 1088 39.8
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 6.9e-194 682.2 1159 38.0
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 6.5e-192 675.6 1183 38.5
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 1.1e-191 674.9 1165 38.7
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 3.2e-191 673.3 1164 38.4
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 3.6e-190 669.8 1161 37.0
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.0e-189 668.3 1156 38.7
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 1.5e-188 664.5 1189 37.6
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 9.7e-188 661.8 1182 37.9
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 6.3e-187 659.1 1171 36.1
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 1.1e-186 658.3 1097 39.5
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 2.0e-185 654.1 1157 36.7
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 4.5e-185 652.9 1158 36.4
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 3.8e-184 649.8 1155 36.0
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.9e-183 647.5 1177 35.8
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 2.5e-183 647.1 973 41.5
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 3.2e-183 646.7 1191 37.0
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 8.8e-181 638.6 1164 36.2
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 2.6e-180 637.1 1180 36.3
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 1.8e-178 630.9 1158 36.2
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 1.8e-178 630.9 1160 35.9
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 2.6e-177 627.1 1262 34.5
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 5.9e-177 625.9 1156 34.9
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 1.7e-176 624.4 1173 36.2
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 1.5e-175 621.3 1156 35.3
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 3.0e-173 613.6 1175 34.6
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 6.7e-173 612.5 1167 35.0
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 2.6e-172 610.5 1172 36.0
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 1.7e-171 607.8 1151 35.3
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 1.7e-171 607.8 1163 35.0
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 2.8e-171 607.1 1157 34.8
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 8.2e-171 605.5 1172 35.6
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 8.2e-171 605.5 1172 35.6
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 2.4e-170 604.0 1174 35.0
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 5.9e-169 599.4 1157 34.7
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.0e-168 598.6 1148 34.4
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 2.2e-168 597.4 1175 35.0
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 3.2e-167 593.6 1004 38.8
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.1e-166 590.9 329 91.5
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 3.6e-166 590.1 1165 35.2
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 3.0e-165 587.0 1176 34.5
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 6.8e-165 585.9 1035 37.8
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 1.7e-163 581.3 934 38.5
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 3.7e-163 580.1 1159 34.6
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 3.1e-162 577.0 1153 34.6
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 3.1e-162 577.0 1140 35.8
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.2e-161 575.1 1185 34.6
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 2.2e-160 570.9 1183 33.9
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 2.5e-159 567.4 1157 33.6
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.1e-158 564.3 306 95.1
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 5.2e-157 559.7 1167 33.9
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 2.4e-154 550.8 1211 34.8
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 6.6e-152 542.7 1159 33.6
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 4.3e-151 540.0 1159 34.2
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 5.6e-151 539.7 908 37.6
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 1.0e-144 518.8 1105 33.3
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 5.8e-140 503.1 1207 31.2
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 1.9e-138 498.0 1135 32.9
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 4.0e-133 480.3 985 34.0
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 7.3e-119 433.0 1278 28.5
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 8.9e-117 426.0 907 33.7
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 3.4e-116 424.1 306 72.2
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 3.5e-113 414.1 301 71.8
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 4.6e-113 413.7 301 71.8
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 8.7e-112 409.5 301 71.4
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 1.9e-111 408.3 301 70.1
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 9.6e-111 406.0 301 69.4
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 1.4e-109 402.1 1233 27.6
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 1.6e-97 362.1 312 62.8
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 1.6e-97 362.1 900 29.4
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.5e-95 355.5 884 31.8
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 3.3e-95 354.4 660 36.8
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 4.0e-93 347.4 309 58.6
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 4.9e-91 340.5 309 57.6
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 7.4e-87 326.6 174 94.8
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 2.5e-82 311.6 1255 26.6
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 3.0e-80 304.7 1262 24.2
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 2.2e-75 288.5 451 38.4
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 1.1e-69 269.6 175 77.7
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 2.9e-67 261.5 810 29.1
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 1.5e-63 249.2 264 50.4
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 4.1e-61 241.1 1119 24.7
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 5.9e-60 237.3 435 35.6
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 6.5e-59 233.8 317 43.5
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 1.9e-58 232.3 167 73.1
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.6e-55 221.9 236 50.8
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.4e-53 215.3 265 49.1
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 4.5e-52 211.1 990 24.8
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 2.9e-51 208.4 184 56.5
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 2.1e-49 202.2 175 62.9
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 2.2e-46 192.2 175 57.1
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 3.5e-44 184.9 289 38.8
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 2.9e-43 181.8 193 54.9
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 3.6e-41 174.9 181 54.1
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.0e-40 173.3 418 32.5
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.4e-29 135.6 114 63.2
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.2e-28 133.3 115 61.7
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.9e-27 128.3 506 25.3
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 3.9e-27 128.3 368 26.9
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 4.3e-26 124.8 100 66.0
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 2.1e-25 122.5 270 31.9
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.9e-22 112.1 96 63.5
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.1e-16 92.0 247 27.5
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 5.2e-16 91.3 442 23.5
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 1.4e-13 83.2 222 27.0
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 2.1e-09 69.3 87 36.8
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 2.8e-09 68.9 86 37.2
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 1.2e-07 63.5 45 66.7
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 1.2e-07 63.5 49 61.2
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 2.0e-07 62.8 45 64.4
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 2.0e-07 62.8 73 47.9
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.3e-06 60.1 138 29.0


User provided reference genes

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