Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 7.8e-280 966.5 483 100.0
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 5.9e-227 790.8 485 83.3
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 1.6e-219 766.1 444 83.3
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 2.5e-217 758.8 466 78.8
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 4.2e-217 758.1 442 82.8
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 9.4e-217 756.9 494 79.8
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 2.1e-216 755.7 467 79.7
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 3.1e-212 741.9 458 79.7
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 1.6e-211 739.6 479 77.7
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 1.2e-206 723.4 442 80.1
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 2.1e-192 676.0 442 76.0
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 6.2e-192 674.5 456 73.7
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 6.2e-192 674.5 443 74.5
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 8.0e-192 674.1 444 73.6
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 8.0e-192 674.1 462 72.1
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 1.3e-189 666.8 426 76.3
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 4.1e-188 661.8 426 76.1
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 3.0e-186 655.6 432 73.4
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 3.0e-186 655.6 463 69.8
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 7.3e-185 651.0 429 73.0
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 7.3e-185 651.0 428 74.3
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 3.6e-184 648.7 457 70.0
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 8.1e-184 647.5 452 69.7
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 6.8e-183 644.4 429 72.3
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 8.9e-183 644.0 426 71.1
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 2.0e-182 642.9 444 70.7
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 2.6e-182 642.5 416 74.0
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 6.4e-181 637.9 416 73.1
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 1.1e-180 637.1 450 68.4
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 1.9e-180 636.3 439 69.9
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 4.1e-180 635.2 495 64.8
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 4.1e-180 635.2 464 65.7
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 1.2e-179 633.6 417 73.9
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 2.1e-179 632.9 435 72.9
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 2.7e-179 632.5 438 70.3
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 4.6e-179 631.7 445 68.3
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 6.0e-179 631.3 466 65.7
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 7.8e-179 630.9 468 66.0
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 1.7e-178 629.8 464 65.5
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 5.1e-178 628.2 411 74.5
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 4.3e-177 625.2 476 66.8
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 4.3e-177 625.2 433 69.1
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 6.2e-176 621.3 417 72.9
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 2.4e-175 619.4 435 68.0
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 6.8e-175 617.8 481 65.9
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 1.5e-174 616.7 409 73.8
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 4.4e-174 615.1 436 70.6
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 7.1e-172 607.8 445 66.7
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 1.2e-171 607.1 426 68.3
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 2.1e-171 606.3 467 65.7
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 1.3e-170 603.6 407 71.0
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 6.6e-170 601.3 433 67.0
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 6.6e-170 601.3 411 71.3
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 1.9e-169 599.7 449 66.1
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 3.3e-169 599.0 404 70.3
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 7.3e-169 597.8 418 70.8
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 7.3e-169 597.8 443 69.1
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 2.4e-167 592.8 424 67.7
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 1.5e-166 590.1 454 64.8
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.4e-164 582.8 444 66.4
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 4.2e-164 582.0 425 66.6
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 4.2e-164 582.0 457 64.6
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 5.4e-164 581.6 429 64.1
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 1.2e-163 580.5 443 65.5
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 1.6e-163 580.1 435 67.8
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 1.3e-162 577.0 507 59.8
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 6.6e-162 574.7 425 66.6
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 1.9e-161 573.2 441 63.7
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 9.6e-161 570.9 416 65.9
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 2.8e-160 569.3 439 66.3
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 2.8e-160 569.3 424 63.4
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 6.2e-160 568.2 446 63.7
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 3.1e-159 565.8 459 60.1
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 4.0e-159 565.5 503 59.6
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 4.5e-158 562.0 453 62.9
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 1.9e-156 556.6 429 65.0
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 4.2e-156 555.4 421 65.1
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 6.0e-155 551.6 381 70.3
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 7.9e-155 551.2 562 52.5
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 5.3e-151 538.5 446 62.8
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 1.2e-150 537.3 347 73.5
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.3e-149 533.9 458 60.7
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.9e-149 532.7 503 57.7
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 4.9e-149 531.9 391 66.5
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 1.9e-145 520.0 401 64.6
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 4.8e-144 515.4 418 59.1
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 6.2e-144 515.0 347 70.9
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 2.4e-143 513.1 400 62.8
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 5.7e-137 491.9 400 60.2
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 8.2e-136 488.0 426 56.3
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 3.8e-133 479.2 440 57.3
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 1.2e-131 474.2 340 70.0
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 9.7e-129 464.5 407 56.5
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 8.2e-128 461.5 424 57.1
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 8.5e-125 451.4 324 67.9
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 2.0e-121 440.3 438 55.0
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 1.9e-116 423.7 466 46.6
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 4.7e-115 419.1 323 65.6
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 6.3e-112 408.7 281 73.0
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 2.7e-107 393.3 411 48.9
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 1.6e-99 367.5 270 68.1
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 6.8e-90 335.5 236 71.6
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 7.5e-81 305.4 189 73.5
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 3.7e-80 303.1 256 56.6
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 3.1e-74 283.5 187 71.1
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.9e-72 276.9 241 61.0
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 1.1e-63 248.4 197 64.5
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 1.6e-59 234.6 307 46.3
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 7.1e-55 219.2 187 59.9
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 7.3e-44 182.6 260 41.5
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 2.1e-43 181.0 132 69.7
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 1.0e-37 162.2 96 76.0
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 1.1e-36 158.7 121 59.5
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 5.6e-36 156.4 319 38.2
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 7.4e-36 156.0 145 51.7
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 1.1e-34 152.1 121 60.3
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 6.5e-32 142.9 134 56.0
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 1.6e-30 138.3 236 36.9
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 4.6e-30 136.7 116 54.3
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 4.3e-28 130.2 111 55.9
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 6.9e-26 122.9 455 27.7
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 1.4e-23 115.2 103 54.4
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 6.7e-21 106.3 223 35.4
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 4.3e-20 103.6 96 52.1
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 2.6e-17 94.4 128 41.4
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 2.5e-15 87.8 109 44.0
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 6.1e-14 83.2 269 25.3
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.0e-13 82.4 50 74.0
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.0e-13 82.4 53 69.8
PRCOL_00006911 Prasinoderma coloniale HOM05D002474 ORTHO05D006727 8.8e-13 79.3 489 22.5
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 9.7e-12 75.9 56 55.4
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.7e-11 75.1 43 76.7
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 1.7e-11 75.1 56 55.4
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 9.1e-10 69.3 49 69.4
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 3.8e-08 63.9 35 74.3
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 1.4e-07 62.0 35 71.4


User provided reference genes

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