Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 9.6e-178 626.7 316 100.0
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 2.7e-148 528.9 316 86.4
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 1.8e-147 526.2 317 86.1
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 7.0e-144 514.2 318 84.3
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 3.6e-132 475.3 324 78.7
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 3.0e-131 472.2 325 77.2
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 1.4e-128 463.4 318 78.0
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 1.0e-126 457.2 314 77.7
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 2.0e-122 443.0 316 75.0
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 1.1e-117 427.2 317 72.2
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 1.6e-116 423.3 317 71.9
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 1.6e-116 423.3 319 71.5
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 1.7e-113 413.3 318 70.1
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 6.4e-113 411.4 313 70.3
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 1.1e-112 410.6 320 68.1
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 1.9e-112 409.8 320 68.8
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 2.4e-112 409.5 311 71.7
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 1.6e-111 406.8 274 75.9
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 2.7e-111 406.0 267 76.8
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 3.5e-111 405.6 324 69.4
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 3.5e-111 405.6 320 70.3
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 4.6e-111 405.2 320 68.1
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 6.0e-111 404.8 318 68.6
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.3e-110 403.7 336 66.7
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 1.7e-110 403.3 267 76.0
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 2.3e-110 402.9 266 76.7
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 3.0e-110 402.5 314 69.1
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 3.0e-110 402.5 310 70.0
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 8.6e-110 401.0 320 68.4
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 4.3e-109 398.7 322 68.0
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 9.5e-109 397.5 317 67.5
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 2.1e-108 396.4 323 67.5
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 3.6e-108 395.6 317 68.5
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 4.7e-108 395.2 316 67.7
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 6.2e-108 394.8 317 68.5
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 8.0e-108 394.4 322 67.4
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 8.0e-108 394.4 315 67.9
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 1.1e-107 394.0 295 71.5
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 1.8e-107 393.3 317 67.5
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 4.0e-107 392.1 316 67.4
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 6.8e-107 391.3 303 66.0
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 6.8e-107 391.3 322 66.8
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 8.9e-107 391.0 313 68.4
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 1.5e-106 390.2 324 68.8
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 3.4e-106 389.0 322 66.8
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 4.4e-106 388.7 324 68.2
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 4.4e-106 388.7 324 68.8
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 2.2e-105 386.3 197 95.9
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 6.4e-105 384.8 319 66.5
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 6.4e-105 384.8 291 69.8
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 1.1e-104 384.0 320 66.2
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 1.9e-104 383.3 259 74.5
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 2.4e-104 382.9 322 66.1
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 4.1e-104 382.1 319 66.1
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 4.1e-104 382.1 357 60.2
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 1.6e-103 380.2 319 66.1
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 3.5e-103 379.0 319 65.8
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.0e-102 377.5 316 65.8
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 6.6e-102 374.8 315 64.1
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 8.6e-102 374.4 292 68.8
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 2.5e-101 372.9 320 63.8
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 4.3e-101 372.1 317 64.0
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 1.2e-100 370.5 297 65.3
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 6.2e-100 368.2 306 66.0
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 2.3e-99 366.3 318 62.3
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 2.6e-98 362.8 275 68.0
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 7.6e-98 361.3 293 66.2
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 8.3e-97 357.8 294 67.0
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 1.1e-96 357.5 318 62.6
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 1.1e-96 357.5 319 63.0
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 1.1e-96 357.5 319 62.4
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 1.4e-96 357.1 319 62.1
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 1.4e-96 357.1 306 64.7
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 1.9e-96 356.7 222 77.9
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 7.1e-96 354.8 322 62.4
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 1.2e-95 354.0 334 59.6
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 1.6e-95 353.6 322 62.1
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 2.1e-95 353.2 351 59.3
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 2.1e-95 353.2 316 61.4
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 4.6e-95 352.1 324 61.4
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 4.6e-95 352.1 324 61.4
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 4.6e-95 352.1 304 62.2
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 6.0e-95 351.7 292 66.8
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 1.0e-94 350.9 340 59.1
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 3.0e-94 349.4 257 70.0
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 5.1e-94 348.6 304 64.5
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 2.0e-90 336.7 293 65.2
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 7.6e-90 334.7 258 65.1
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 2.9e-89 332.8 275 67.3
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 9.3e-88 327.8 212 76.4
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 2.7e-87 326.2 291 59.5
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.5e-85 320.5 210 76.2
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 3.3e-85 319.3 312 56.4
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 4.8e-84 315.5 224 71.9
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 3.4e-82 309.3 282 62.4
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 2.1e-79 300.1 176 82.4
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 4.8e-76 288.9 176 80.1
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 5.4e-72 275.4 180 75.6
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 8.7e-70 268.1 262 54.6
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 5.6e-69 265.4 322 49.7
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 4.5e-66 255.8 235 62.1
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 5.5e-64 248.8 205 59.0
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 2.7e-63 246.5 209 63.2
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 3.0e-62 243.0 230 56.1
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 8.7e-62 241.5 196 60.7
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 1.2e-58 231.1 210 55.2
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 6.7e-54 215.3 238 55.9
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 1.3e-49 201.1 235 48.5
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 1.2e-42 177.9 162 56.2
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 7.7e-42 175.3 208 42.8
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 5.5e-40 169.1 261 37.2
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 3.9e-38 162.9 123 63.4
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 1.4e-30 137.9 79 79.7
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 1.3e-28 131.3 119 52.9
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 6.3e-28 129.0 97 68.0
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 3.1e-27 126.7 91 72.5
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 2.5e-24 117.1 61 91.8
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 1.2e-21 108.2 75 72.0
Lsat_1_v5_gn_7_34121 Lactuca sativa HOM05D006434 ORTHO05D008069 5.0e-09 66.2 37 81.1
Cpa.g.sc14.61 Carica papaya HOM05D006434 ORTHO05D008069 7.2e-08 62.4 116 44.8
Lj7A404T38 Lonicera japonica HOM05D006434 ORTHO05D008069 2.8e-07 60.5 134 31.3


User provided reference genes

Program Settings