Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 2.3e-54 215.3 109 100.0
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 3.1e-43 178.3 98 93.9
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 2.0e-42 175.6 98 90.8
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 2.3e-38 162.2 106 81.1
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 1.0e-30 136.7 114 65.8
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 4.4e-29 131.3 111 67.6
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 1.2e-26 123.2 96 75.0
Lalb_Chr21g0319141 Lupinus albus HOM05D004965 ORTHO05D004401 3.8e-25 118.2 96 70.8
Medtr6g009390 Medicago truncatula HOM05D004965 ORTHO05D004401 8.9e-22 107.1 68 82.4
arahy.Tifrunner.gnm1.ann1.6A0KRF Arachis hypogaea HOM05D004965 ORTHO05D004401 2.4e-19 99.0 104 59.6
arahy.Tifrunner.gnm1.ann1.E1G8VG Arachis hypogaea HOM05D004965 ORTHO05D004401 2.4e-19 99.0 104 59.6
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 7.8e-18 94.0 86 59.3
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 5.0e-17 91.3 88 55.7
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 1.1e-16 90.1 93 51.6
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 1.5e-16 89.7 89 56.2
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 5.6e-16 87.8 85 57.6
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 2.1e-15 85.9 100 49.0
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 6.1e-15 84.3 100 49.0
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 6.1e-15 84.3 102 52.0
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.4e-14 83.2 90 56.7
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.4e-14 83.2 90 56.7
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.8e-14 82.8 100 48.0
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.3e-14 82.4 90 56.7
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 6.8e-14 80.9 90 55.6
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.2e-13 80.1 90 55.6
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 1.5e-13 79.7 97 48.5
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 2.6e-13 79.0 83 50.6
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.6e-13 79.0 89 48.3
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 1.3e-12 76.6 99 47.5
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 3.7e-12 75.1 88 43.2
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.7e-12 75.1 100 46.0
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 4.9e-12 74.7 89 49.4
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 8.3e-12 73.9 97 47.4
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 1.1e-11 73.6 86 44.2
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 5.4e-11 71.2 88 45.5
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 5.4e-11 71.2 94 44.7
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 3.5e-10 68.6 106 38.7
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.5e-10 68.6 100 41.0
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 7.8e-10 67.4 76 50.0
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 1.3e-09 66.6 90 42.2
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.7e-09 66.2 97 40.2
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 3.0e-09 65.5 78 46.2
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 3.0e-09 65.5 108 44.4
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 3.9e-09 65.1 88 38.6
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 5.0e-09 64.7 86 47.7
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 8.6e-09 63.9 83 43.4
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.1e-08 63.5 84 42.9
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.5e-08 63.2 98 38.8
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 1.5e-08 63.2 116 37.1
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 1.9e-08 62.8 86 44.2
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 2.5e-08 62.4 114 40.4
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 2.5e-08 62.4 97 39.2
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 2.5e-08 62.4 89 41.6
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.3e-08 62.0 90 43.3
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.3e-08 62.0 90 43.3
Thhalv10028314m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 4.3e-08 61.6 79 49.4
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 4.3e-08 61.6 90 43.3
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 5.6e-08 61.2 96 40.6
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 5.6e-08 61.2 84 42.9
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 5.6e-08 61.2 92 43.5
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 7.3e-08 60.8 61 52.5
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 1.2e-07 60.1 91 40.7
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 2.1e-07 59.3 84 44.0
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 2.8e-07 58.9 94 40.4
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 3.6e-07 58.5 105 42.9
Thhalv10005220m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 3.6e-07 58.5 93 41.9
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 3.6e-07 58.5 101 36.6
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 4.7e-07 58.2 96 40.6
Peaxi162Scf00059g00123 Petunia axillaris HOM05D028751 ORTHO05D030265 6.2e-07 57.8 82 42.7
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 6.2e-07 57.8 96 40.6
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 8.0e-07 57.4 103 35.0
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 8.0e-07 57.4 93 41.9
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 1.1e-06 57.0 50 56.0
AT3G28455 Arabidopsis thaliana HOM05D009946 ORTHO05D004401 1.8e-06 56.2 94 40.4
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 2.3e-06 55.8 94 40.4
CARHR292510 Cardamine hirsuta HOM05D009946 ORTHO05D004401 2.3e-06 55.8 94 41.5
Sp2g17220 Schrenkiella parvula HOM05D009946 ORTHO05D004401 3.1e-06 55.5 94 40.4
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 4.0e-06 55.1 103 38.8
Lsat_1_v5_gn_0_35980 Lactuca sativa HOM05D004965 ORTHO05D004401 4.0e-06 55.1 88 39.8
Eucgr.B02578 Eucalyptus grandis HOM05D004965 ORTHO05D004401 5.2e-06 54.7 100 37.0
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 5.2e-06 54.7 64 46.9
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 6.8e-06 54.3 108 33.3
Solyc05g006610.4 Solanum lycopersicum HOM05D004965 ORTHO05D004401 6.8e-06 54.3 39 64.1
Sopen05g002550 Solanum pennellii HOM05D004965 ORTHO05D004401 6.8e-06 54.3 39 64.1
TWI12G0653 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 6.8e-06 54.3 82 41.5
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 8.9e-06 53.9 98 32.7
SalBow1G8504 Salvia bowleyana HOM05D004965 ORTHO05D004401 8.9e-06 53.9 92 38.0


User provided reference genes

Program Settings