Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 6.0e-84 314.3 178 100.0
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 7.1e-61 237.7 185 77.8
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 1.4e-56 223.4 149 85.2
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 3.0e-51 205.7 181 70.2
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 5.6e-50 201.4 118 94.9
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 9.3e-45 184.1 196 61.2
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 4.3e-42 175.3 184 61.4
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 2.6e-39 166.0 186 60.2
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 3.0e-35 152.5 177 54.8
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 5.7e-34 148.3 177 54.8
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 1.3e-33 147.1 100 79.0
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 4.8e-33 145.2 149 57.7
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 4.8e-33 145.2 149 57.7
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 4.8e-33 145.2 191 52.4
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 6.3e-33 144.8 115 69.6
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 8.2e-33 144.4 98 78.6
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 1.4e-32 143.7 173 55.5
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.8e-32 143.3 180 54.4
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 2.4e-32 142.9 139 59.0
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 3.1e-32 142.5 135 61.5
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 6.9e-32 141.4 99 75.8
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 6.9e-32 141.4 151 57.0
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 6.9e-32 141.4 189 52.9
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 6.9e-32 141.4 130 62.3
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 9.0e-32 141.0 159 56.0
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 9.0e-32 141.0 137 59.1
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 1.2e-31 140.6 185 53.0
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 1.5e-31 140.2 128 63.3
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.5e-31 140.2 175 53.7
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 2.6e-31 139.4 194 52.6
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 3.4e-31 139.0 177 53.7
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 7.6e-31 137.9 156 55.8
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 7.6e-31 137.9 186 55.4
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 1.0e-30 137.5 187 55.1
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 1.0e-30 137.5 179 55.9
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 1.3e-30 137.1 147 57.1
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 1.3e-30 137.1 92 79.3
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 1.3e-30 137.1 166 54.2
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 1.3e-30 137.1 185 52.4
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 2.9e-30 136.0 181 51.4
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 3.8e-30 135.6 160 55.6
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 5.0e-30 135.2 188 54.3
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 6.5e-30 134.8 186 52.7
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 6.5e-30 134.8 186 52.7
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 8.5e-30 134.4 125 62.4
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 8.5e-30 134.4 187 54.0
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 8.5e-30 134.4 173 50.3
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 8.5e-30 134.4 175 51.4
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 8.5e-30 134.4 186 52.2
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 1.4e-29 133.7 90 74.4
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 1.4e-29 133.7 90 74.4
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 1.4e-29 133.7 90 74.4
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 2.5e-29 132.9 180 50.0
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 2.5e-29 132.9 185 51.4
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 2.5e-29 132.9 169 52.7
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 3.2e-29 132.5 179 53.1
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 4.2e-29 132.1 178 51.1
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 4.2e-29 132.1 178 49.4
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 9.3e-29 131.0 184 52.7
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 9.3e-29 131.0 188 52.7
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 9.3e-29 131.0 92 73.9
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 9.3e-29 131.0 185 51.9
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 1.2e-28 130.6 128 60.9
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 1.2e-28 130.6 184 51.6
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.6e-28 130.2 181 49.2
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 2.1e-28 129.8 191 52.4
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 2.1e-28 129.8 181 48.6
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 2.1e-28 129.8 173 49.1
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 2.1e-28 129.8 181 48.6
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 2.1e-28 129.8 188 51.6
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 2.1e-28 129.8 90 73.3
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.7e-28 129.4 121 62.8
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 3.6e-28 129.0 176 49.4
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 3.6e-28 129.0 100 68.0
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 3.6e-28 129.0 86 75.6
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 3.6e-28 129.0 191 49.7
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.6e-28 129.0 187 52.4
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 3.6e-28 129.0 149 55.7
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 4.6e-28 128.6 170 50.6
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 6.1e-28 128.3 121 62.8
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 1.0e-27 127.5 196 50.0
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 1.0e-27 127.5 102 64.7
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.3e-27 127.1 184 50.5
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 2.3e-27 126.3 178 50.0
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 2.3e-27 126.3 94 70.2
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 3.0e-27 125.9 177 48.6
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 3.0e-27 125.9 184 50.5
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 5.1e-27 125.2 176 50.6
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 1.1e-26 124.0 80 81.2
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 1.5e-26 123.6 176 47.7
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.9e-26 123.2 183 49.7
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 5.7e-26 121.7 177 48.0
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 5.7e-26 121.7 188 46.8
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.7e-25 120.2 166 51.8
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 2.8e-25 119.4 201 49.8
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 4.8e-25 118.6 183 49.2
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 6.3e-25 118.2 201 48.8
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 8.2e-25 117.9 183 49.2
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 8.2e-25 117.9 167 52.7
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 6.9e-24 114.8 185 47.0
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 9.1e-24 114.4 80 72.5
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 4.5e-23 112.1 86 72.1
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.0e-22 110.9 215 43.7
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.2e-22 109.8 175 48.6
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 3.8e-22 109.0 77 71.4
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.8e-22 109.0 175 48.6
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 6.5e-22 108.2 160 49.4
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 4.2e-21 105.5 222 40.1
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 2.1e-20 103.2 75 74.7
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 2.1e-20 103.2 87 62.1
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 4.7e-20 102.1 87 60.9
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 5.1e-19 98.6 71 70.4
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 1.1e-18 97.4 113 52.2
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 5.7e-18 95.1 84 57.1
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.3e-17 94.0 86 54.7
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 8.2e-17 91.3 86 54.7
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.1e-16 90.9 73 71.2
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 3.6e-12 75.9 62 66.1
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.3e-11 73.2 59 71.2
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 2.6e-10 69.7 117 37.6
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 7.4e-10 68.2 166 35.5
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 1.7e-09 67.0 44 75.0
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 4.8e-09 65.5 145 36.6
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.1e-08 64.3 82 47.6
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 9.1e-08 61.2 69 53.6
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 2.6e-07 59.7 85 36.5
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 7.7e-07 58.2 141 36.9
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 5.0e-06 55.5 133 36.8


User provided reference genes

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