Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 2.2e-49 198.7 105 100.0
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 1.5e-47 192.6 105 96.2
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 1.0e-43 179.9 105 87.6
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 3.9e-43 177.9 104 84.6
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 5.1e-43 177.6 105 86.7
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 1.1e-42 176.4 106 90.6
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 5.7e-42 174.1 106 90.6
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 9.7e-42 173.3 105 84.8
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 5.3e-40 167.5 105 81.0
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 2.6e-39 165.2 105 79.0
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 2.6e-39 165.2 105 79.0
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 3.4e-39 164.9 105 79.0
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 1.4e-37 159.5 105 79.0
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 1.4e-37 159.5 105 79.0
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 1.9e-37 159.1 105 78.1
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 2.5e-37 158.7 103 72.8
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 9.4e-37 156.8 103 70.9
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 9.4e-37 156.8 103 70.9
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 9.4e-37 156.8 103 70.9
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 2.1e-36 155.6 103 73.8
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 1.8e-35 152.5 103 73.8
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 6.7e-35 150.6 103 69.9
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 8.8e-35 150.2 103 67.0
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 1.5e-34 149.4 103 69.9
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.0e-34 149.1 103 70.9
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 2.6e-34 148.7 103 69.9
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 3.3e-34 148.3 86 82.6
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 4.4e-34 147.9 103 68.9
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 5.7e-34 147.5 103 70.9
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 5.7e-34 147.5 103 70.9
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 7.4e-34 147.1 103 69.9
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 7.4e-34 147.1 103 69.9
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 9.7e-34 146.7 103 69.9
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 9.7e-34 146.7 105 69.5
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 4.8e-33 144.4 103 70.9
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 6.3e-33 144.1 103 68.9
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 8.2e-33 143.7 103 68.0
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 1.8e-32 142.5 103 68.9
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 2.4e-32 142.1 103 67.0
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 5.3e-32 141.0 103 66.0
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 1.6e-31 139.4 102 66.7
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 2.0e-31 139.0 111 62.2
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 2.0e-31 139.0 85 74.1
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 2.0e-31 139.0 102 65.7
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 2.0e-31 139.0 102 68.6
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 2.6e-31 138.7 103 68.9
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 2.6e-31 138.7 103 66.0
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 2.6e-31 138.7 103 67.0
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 2.6e-31 138.7 103 65.0
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 4.5e-31 137.9 98 69.4
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 7.7e-31 137.1 102 64.7
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 1.7e-30 136.0 102 66.7
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 1.7e-30 136.0 103 66.0
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 5.0e-30 134.4 105 67.6
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 5.0e-30 134.4 102 65.7
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 6.5e-30 134.0 103 60.2
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 6.5e-30 134.0 94 69.1
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 1.1e-29 133.3 105 62.9
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.1e-29 133.3 102 64.7
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 1.5e-29 132.9 92 71.7
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.9e-29 132.5 96 68.8
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 1.9e-29 132.5 102 64.7
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 5.5e-29 131.0 104 65.4
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 5.5e-29 131.0 104 64.4
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 5.5e-29 131.0 104 65.4
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 7.2e-29 130.6 103 63.1
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 9.4e-29 130.2 104 61.5
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 1.2e-28 129.8 103 63.1
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 1.2e-28 129.8 116 57.8
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 2.1e-28 129.0 104 63.5
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 4.7e-28 127.9 103 60.2
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 4.7e-28 127.9 103 63.1
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 4.7e-28 127.9 96 63.5
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 6.1e-28 127.5 103 61.2
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 6.1e-28 127.5 103 61.2
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 6.1e-28 127.5 105 61.9
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 8.0e-28 127.1 103 60.2
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 8.0e-28 127.1 104 65.4
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 8.0e-28 127.1 104 65.4
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.4e-27 126.3 124 54.8
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.8e-27 125.9 103 60.2
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 1.8e-27 125.9 103 62.1
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 1.8e-27 125.9 103 61.2
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 1.8e-27 125.9 103 61.2
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 2.3e-27 125.6 92 68.5
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 4.0e-27 124.8 104 59.6
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 4.0e-27 124.8 98 62.2
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 4.0e-27 124.8 103 59.2
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 4.0e-27 124.8 103 59.2
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 4.0e-27 124.8 103 59.2
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 4.0e-27 124.8 121 57.0
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 4.0e-27 124.8 101 65.3
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 5.2e-27 124.4 104 59.6
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 5.2e-27 124.4 105 61.0
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 5.2e-27 124.4 105 60.0
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 8.8e-27 123.6 103 56.3
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.1e-26 123.2 94 62.8
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 1.1e-26 123.2 85 69.4
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 1.1e-26 123.2 103 58.3
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.1e-26 123.2 103 63.1
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 1.1e-26 123.2 104 60.6
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 1.5e-26 122.9 103 59.2
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 2.6e-26 122.1 104 57.7
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 3.3e-26 121.7 103 57.3
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 5.7e-26 120.9 102 64.7
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 7.5e-26 120.6 91 63.7
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.3e-25 119.8 103 62.1
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 1.3e-25 119.8 93 63.4
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 6.3e-25 117.5 105 57.1
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 8.2e-25 117.1 105 57.1
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 1.1e-24 116.7 102 57.8
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.8e-24 115.9 102 54.9
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.8e-24 115.9 105 56.2
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 3.1e-24 115.2 104 59.6
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 5.3e-24 114.4 102 59.8
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.2e-23 113.2 81 64.2
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.0e-23 112.5 94 60.6
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.7e-23 112.1 92 60.9
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 4.5e-23 111.3 102 59.8
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 7.7e-23 110.5 104 55.8
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 7.7e-23 110.5 104 57.7
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.0e-22 110.2 104 56.7
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.0e-22 110.2 88 67.0
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 1.3e-22 109.8 104 56.7
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 3.8e-22 108.2 74 73.0
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 6.5e-22 107.5 102 55.9
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 6.5e-22 107.5 104 55.8
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 1.9e-21 105.9 74 70.3
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 4.2e-21 104.8 103 52.4
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 4.0e-19 98.2 89 57.3
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 5.2e-19 97.8 89 57.3
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 6.3e-17 90.9 74 63.5
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 1.4e-16 89.7 83 57.8
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 2.4e-16 89.0 88 60.2
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 3.1e-16 88.6 101 49.5
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 4.1e-16 88.2 66 68.2
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 7.0e-16 87.4 55 76.4
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 1.6e-15 86.3 76 59.2
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 3.5e-15 85.1 97 49.5
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 3.8e-14 81.6 66 63.6
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.5e-13 79.0 51 74.5
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 7.2e-13 77.4 76 57.9
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 2.6e-10 68.9 73 53.4
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 3.4e-10 68.6 79 53.2
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 2.4e-08 62.4 67 47.8
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 2.7e-07 58.9 70 51.4


User provided reference genes

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