Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G014666 Phaseolus vulgaris HOM05D004440 ORTHO05D005183 8.5e-70 266.9 139 100.0
Phvul.004G014600 Phaseolus vulgaris HOM05D004440 ORTHO05D005183 5.4e-40 167.9 84 98.8
VMungo0464G1014 Vigna mungo HOM05D004440 ORTHO05D005183 1.6e-36 156.4 84 92.9
VMungo0464G1046 Vigna mungo HOM05D004440 ORTHO05D005183 1.7e-33 146.4 99 78.8
Glyma.13G168700 Glycine max HOM05D004440 ORTHO05D005183 1.1e-32 143.7 82 87.8
Glyma.19G009100 Glycine max HOM05D004440 ORTHO05D005183 3.2e-32 142.1 82 85.4
arahy.Tifrunner.gnm1.ann1.F0HZWU Arachis hypogaea HOM05D004440 ORTHO05D005183 4.6e-31 138.3 86 75.6
arahy.Tifrunner.gnm1.ann1.XDSK4Z Arachis hypogaea HOM05D004440 ORTHO05D005183 4.6e-31 138.3 86 75.6
Lj2g0017879 Lotus japonicus HOM05D004440 ORTHO05D005183 8.6e-30 134.0 89 76.4
Ca_27954_v3 Cicer arietinum L. HOM05D004440 ORTHO05D005183 4.3e-29 131.7 90 75.6
VMungo0464G0725 Vigna mungo HOM05D004440 ORTHO05D005183 4.3e-29 131.7 85 80.0
Lalb_Chr02g0160291 Lupinus albus HOM05D004440 ORTHO05D005183 1.6e-28 129.8 85 75.3
Rhsim10G0022600 Rhododendron simsii HOM05D004440 ORTHO05D005183 2.8e-28 129.0 81 75.3
Psat1g056760 Pisum sativum HOM05D004440 ORTHO05D005183 8.1e-28 127.5 84 76.2
CiPaw.03G037800 Carya illinoinensis HOM05D004440 ORTHO05D005183 1.4e-27 126.7 84 76.2
CiPaw.04G024700 Carya illinoinensis HOM05D004440 ORTHO05D005183 1.4e-27 126.7 87 73.6
Medtr6g007170 Medicago truncatula HOM05D004440 ORTHO05D005183 1.4e-27 126.7 89 73.0
Phvul.004G014800 Phaseolus vulgaris HOM05D004440 ORTHO05D005183 1.4e-27 126.7 90 76.7
CsaV3_3G042420 Cucumis sativus L. HOM05D004440 ORTHO05D005183 3.1e-27 125.6 87 72.4
Psat1g058600 Pisum sativum HOM05D004440 ORTHO05D005183 6.8e-27 124.4 84 73.8
vmacro05820 Vaccinium macrocarpon HOM05D004440 ORTHO05D005183 6.8e-27 124.4 83 71.1
ClCG10G014220 Citrullus lanatus HOM05D004440 ORTHO05D005183 8.9e-27 124.0 87 71.3
Sed0024150 Sechium edule HOM05D004440 ORTHO05D005183 8.9e-27 124.0 87 72.4
CANSAT64G0084 Cannabis sativa HOM05D004440 ORTHO05D005183 1.5e-26 123.2 83 74.7
Sabra14G0123000 Salix brachista HOM05D004440 ORTHO05D005183 1.5e-26 123.2 90 71.1
Glyma.19G009000 Glycine max HOM05D004440 ORTHO05D005183 2.0e-26 122.9 84 76.2
Hund04695 Selenicereus undatus HOM05D004440 ORTHO05D005183 2.6e-26 122.5 90 67.8
vmacro05821 Vaccinium macrocarpon HOM05D004440 ORTHO05D005183 4.4e-26 121.7 84 71.4
HanXRQChr04g0103861 Helianthus annuus HOM05D004440 ORTHO05D005183 7.6e-26 120.9 84 67.9
Manes.17G122100 Manihot esculenta HOM05D004440 ORTHO05D005183 7.6e-26 120.9 85 71.8
PGR083G1778 Punica granatum HOM05D004440 ORTHO05D005183 7.6e-26 120.9 84 70.2
Sc15g0002660 Simmondsia chinensis HOM05D004440 ORTHO05D005183 7.6e-26 120.9 90 66.7
Potri.014G161300 Populus trichocarpa HOM05D004440 ORTHO05D005183 9.9e-26 120.6 90 70.0
Aqoxy2G03548 Aquilegia oxysepala HOM05D004440 ORTHO05D005183 1.3e-25 120.2 85 70.6
Aqoxy3G02967 Aquilegia oxysepala HOM05D004440 ORTHO05D005183 1.7e-25 119.8 86 69.8
Cfa007429 Carpinus fangiana HOM05D004440 ORTHO05D005183 1.7e-25 119.8 84 70.2
Haze_14668 Corylus avellana HOM05D004440 ORTHO05D005183 2.2e-25 119.4 84 70.2
Hma1.2p1_0993F.1_g245540 Hydrangea macrophylla HOM05D004440 ORTHO05D005183 3.7e-25 118.6 86 69.8
Hma1.2p1_2562F.1_g324430 Hydrangea macrophylla HOM05D004440 ORTHO05D005183 3.7e-25 118.6 86 69.8
Thecc.04G008800 Theobroma cacao HOM05D004440 ORTHO05D005183 3.7e-25 118.6 82 72.0
Duzib147G0931 Durio zibethinus HOM05D004440 ORTHO05D005183 4.9e-25 118.2 82 72.0
TPR.G2289 Trifolium pratense HOM05D004440 ORTHO05D005183 4.9e-25 118.2 92 66.3
GSVIVG01032479001 Vitis vinifera HOM05D004440 ORTHO05D005183 4.9e-25 118.2 80 71.2
Peaxi162Scf00129g01035 Petunia axillaris HOM05D004440 ORTHO05D005183 6.4e-25 117.9 81 69.1
COL.COLO4_28947 Corchorus olitorius HOM05D004440 ORTHO05D005183 8.4e-25 117.5 83 69.9
Manes.15G181900 Manihot esculenta HOM05D004440 ORTHO05D005183 8.4e-25 117.5 86 68.6
Sopen02g031650 Solanum pennellii HOM05D004440 ORTHO05D005183 8.4e-25 117.5 81 69.1
MSTRG.3172 Avicennia marina HOM05D004440 ORTHO05D005183 1.1e-24 117.1 85 70.6
AUR62040327 Chenopodium quinoa HOM05D004440 ORTHO05D005183 1.1e-24 117.1 88 64.8
Nitab4.5_0003337g0060 Nicotiana tabacum HOM05D004440 ORTHO05D005183 1.1e-24 117.1 87 67.8
CSS0042726 Camellia sinensis var. sinensis HOM05D004440 ORTHO05D005183 1.4e-24 116.7 85 68.2
Cpa.g.sc39.91 Carica papaya HOM05D004440 ORTHO05D005183 1.4e-24 116.7 87 67.8
MD09G1034400 Malus domestica HOM05D004440 ORTHO05D005183 1.4e-24 116.7 87 67.8
Oeu062918.1 Olea europaea HOM05D004440 ORTHO05D005183 1.4e-24 116.7 85 68.2
PGSC0003DMG400000496 Solanum tuberosum HOM05D004440 ORTHO05D005183 1.4e-24 116.7 81 69.1
Ciclev10015585m.g Citrus clementina HOM05D004440 ORTHO05D005183 1.9e-24 116.3 85 70.6
TWI56G1191 Tripterygium wilfordii HOM05D004440 ORTHO05D005183 1.9e-24 116.3 88 69.3
DCAR_021682 Daucus carota HOM05D004440 ORTHO05D005183 2.4e-24 115.9 85 68.2
Nn3g16884 Nelumbo nucifera HOM05D004440 ORTHO05D005183 2.4e-24 115.9 84 67.9
SGA_v2.0_scaffold135G34861 Striga asiatica HOM05D004440 ORTHO05D005183 2.4e-24 115.9 84 64.3
Atru.chr6.2295 Acer truncatum HOM05D004440 ORTHO05D005183 4.1e-24 115.2 85 68.2
EL10Ac4g08574 Beta vulgaris HOM05D004440 ORTHO05D005183 4.1e-24 115.2 91 62.6
Nitab4.5_0005176g0010 Nicotiana tabacum HOM05D004440 ORTHO05D005183 4.1e-24 115.2 87 66.7
Prupe.3G284000 Prunus persica HOM05D004440 ORTHO05D005183 4.1e-24 115.2 85 67.1
Actinidia16933 Actinidia chinensis HOM05D004440 ORTHO05D005183 5.4e-24 114.8 84 69.0
FvH4_6g50630 Fragaria vesca HOM05D004440 ORTHO05D005183 5.4e-24 114.8 85 68.2
FAN09G2584 Fragaria x ananassa HOM05D004440 ORTHO05D005183 5.4e-24 114.8 85 68.2
FAN14G3873 Fragaria x ananassa HOM05D004440 ORTHO05D005183 5.4e-24 114.8 85 68.2
RcHm_v2.0_Chr2g0171431 Rosa chinensis HOM05D004440 ORTHO05D005183 5.4e-24 114.8 87 67.8
AUR62043797 Chenopodium quinoa HOM05D004440 ORTHO05D005183 7.1e-24 114.4 86 65.1
ECA238G2781 Erigeron canadensis HOM05D004440 ORTHO05D005183 7.1e-24 114.4 85 64.7
FAN05G4697 Fragaria x ananassa HOM05D004440 ORTHO05D005183 7.1e-24 114.4 85 68.2
Gohir.A07G219700 Gossypium hirsutum HOM05D004440 ORTHO05D005183 7.1e-24 114.4 82 68.3
Gorai.001G261400 Gossypium raimondii HOM05D004440 ORTHO05D005183 7.1e-24 114.4 82 68.3
Lsat_1_v5_gn_2_92220 Lactuca sativa HOM05D004440 ORTHO05D005183 9.2e-24 114.0 85 62.4
PSO170G5364 Papaver somniferum HOM05D004440 ORTHO05D005183 1.2e-23 113.6 86 66.3
QL02p076678 Quercus lobata HOM05D004440 ORTHO05D005183 1.2e-23 113.6 69 76.8
Aa31LG11G14670 Aethionema arabicum HOM05D004440 ORTHO05D005183 1.6e-23 113.2 88 64.8
CDE06G1412 Ceratophyllum demersum HOM05D004440 ORTHO05D005183 1.6e-23 113.2 82 64.6
Gohir.D07G226500 Gossypium hirsutum HOM05D004440 ORTHO05D005183 1.6e-23 113.2 82 68.3
TAR622G1110 Trochodendron aralioides HOM05D004440 ORTHO05D005183 1.6e-23 113.2 83 66.3
Dinv33492 Davidia involucrata HOM05D004440 ORTHO05D005183 2.1e-23 112.8 86 67.4
Thhalv10013803m.g Eutrema salsugineum HOM05D004440 ORTHO05D005183 2.7e-23 112.5 83 68.7
Rhsim08G0055000 Rhododendron simsii HOM05D004440 ORTHO05D005183 2.7e-23 112.5 88 61.4
SEGI_05498 Sequoiadendron giganteum HOM05D004440 ORTHO05D005183 2.7e-23 112.5 85 65.9
MD17G1034800 Malus domestica HOM05D004440 ORTHO05D005183 3.5e-23 112.1 87 65.5
ATR0730G233 Amborella trichopoda HOM05D004440 ORTHO05D005183 4.6e-23 111.7 81 67.9
A02p02730 Brassica napus HOM05D004440 ORTHO05D005183 7.8e-23 110.9 83 68.7
BolC2t06663H Brassica oleracea HOM05D004440 ORTHO05D005183 7.8e-23 110.9 83 68.7
BraA02t05244Z Brassica rapa HOM05D004440 ORTHO05D005183 7.8e-23 110.9 83 68.7
Eucgr.J02208 Eucalyptus grandis HOM05D004440 ORTHO05D005183 7.8e-23 110.9 81 69.1
Sp3g30980 Schrenkiella parvula HOM05D004440 ORTHO05D005183 7.8e-23 110.9 85 67.1
Sp6g29260 Schrenkiella parvula HOM05D004440 ORTHO05D005183 7.8e-23 110.9 83 66.3
vmacro18243 Vaccinium macrocarpon HOM05D004440 ORTHO05D005183 7.8e-23 110.9 87 67.8
C09p62370 Brassica napus HOM05D004440 ORTHO05D005183 1.0e-22 110.5 85 65.9
Eucgr.J02207 Eucalyptus grandis HOM05D004440 ORTHO05D005183 1.0e-22 110.5 81 69.1
Thhalv10012160m.g Eutrema salsugineum HOM05D004440 ORTHO05D005183 1.3e-22 110.2 85 64.7
Migut.H00121 Erythranthe guttata HOM05D004440 ORTHO05D005183 1.7e-22 109.8 87 62.1
BolC2t06665H Brassica oleracea HOM05D004440 ORTHO05D005183 2.3e-22 109.4 83 67.5
Eucgr.J02209 Eucalyptus grandis HOM05D004440 ORTHO05D005183 2.3e-22 109.4 81 69.1
BcaB08g36947 Brassica carinata HOM05D004440 ORTHO05D005183 3.0e-22 109.0 83 65.1
MBI16_g32801_MAGBIO Magnolia biondii HOM05D004440 ORTHO05D005183 3.0e-22 109.0 83 62.7
Cc07_g02270 Coffea canephora HOM05D004440 ORTHO05D005183 6.6e-22 107.8 84 65.5
Cc09_g06160 Coffea canephora HOM05D004440 ORTHO05D005183 6.6e-22 107.8 84 65.5
Os06g0486800 Oryza sativa ssp. japonica HOM05D004440 ORTHO05D005183 6.6e-22 107.8 84 70.2
BcaC03g13445 Brassica carinata HOM05D004440 ORTHO05D005183 8.6e-22 107.5 83 66.3
C02p07330 Brassica napus HOM05D004440 ORTHO05D005183 8.6e-22 107.5 83 66.3
MELO3C009956.2 Cucumis melo HOM05D004440 ORTHO05D005183 1.1e-21 107.1 57 84.2
AL6G25580 Arabidopsis lyrata HOM05D004440 ORTHO05D005183 1.9e-21 106.3 84 64.3
THA.LOC104822387 Tarenaya hassleriana HOM05D004440 ORTHO05D005183 2.5e-21 105.9 87 64.4
A10p23900 Brassica napus HOM05D004440 ORTHO05D005183 3.3e-21 105.5 86 62.8
unitig_62.g23157 Utricularia gibba HOM05D004440 ORTHO05D005183 3.3e-21 105.5 81 67.9
HPP92_019950 Vanilla planifolia HOM05D004440 ORTHO05D005183 1.6e-20 103.2 85 60.0
CARHR198530 Cardamine hirsuta HOM05D004440 ORTHO05D005183 2.8e-20 102.4 81 64.2
BraA10t44454Z Brassica rapa HOM05D004440 ORTHO05D005183 3.6e-20 102.1 85 62.4
Zm00001eb382240 Zea mays HOM05D004440 ORTHO05D005183 4.7e-20 101.7 83 66.3
BcaC04g19009 Brassica carinata HOM05D004440 ORTHO05D005183 6.2e-20 101.3 84 65.5
BolC9t59075H Brassica oleracea HOM05D004440 ORTHO05D005183 6.2e-20 101.3 84 65.5
Medtr6g007175 Medicago truncatula HOM05D004440 ORTHO05D005183 8.1e-20 100.9 53 84.9
Carub.0006s1295 Capsella rubella HOM05D004440 ORTHO05D005183 2.4e-19 99.4 84 59.5
Lj7A591G80 Lonicera japonica HOM05D004440 ORTHO05D005183 3.1e-19 99.0 56 76.8
Os06g0486900 Oryza sativa ssp. japonica HOM05D004440 ORTHO05D005183 3.1e-19 99.0 83 62.7
CAN.G206.32 Capsicum annuum HOM05D004440 ORTHO05D005183 8.9e-19 97.4 59 72.9
AT5G14780 Arabidopsis thaliana HOM05D004440 ORTHO05D005183 1.2e-18 97.1 51 82.4
Carub.0018s0004 Capsella rubella HOM05D004440 ORTHO05D005183 2.6e-18 95.9 86 59.3
Carub.0030s0001 Capsella rubella HOM05D004440 ORTHO05D005183 4.4e-18 95.1 91 54.9
Carub.0001s3408 Capsella rubella HOM05D004440 ORTHO05D005183 3.8e-17 92.0 53 77.4
BcaNung03094 Brassica carinata HOM05D004440 ORTHO05D005183 6.4e-17 91.3 81 59.3
Pp3c16_11630 Physcomitrium patens HOM05D004440 ORTHO05D005183 2.4e-16 89.4 65 64.6
SMO116G0169 Selaginella moellendorffii HOM05D004440 ORTHO05D005183 2.7e-15 85.9 67 61.2
Mapoly0004s0175 Marchantia polymorpha HOM05D004440 ORTHO05D005183 6.6e-14 81.3 50 72.0
Solyc02g086880.4 Solanum lycopersicum HOM05D004440 ORTHO05D005183 1.2e-10 70.5 34 85.3
Lsat_1_v5_gn_1_95460 Lactuca sativa HOM05D004440 ORTHO05D005183 4.4e-10 68.6 34 79.4
AagrBONN_evm.TU.Sc2ySwM_228.5137__5138 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.9e-10 67.4 56 53.6
PGSC0003DMG400026801 Solanum tuberosum HOM05D004440 ORTHO05D005183 4.2e-08 62.0 34 73.5
Cfa023380 Carpinus fangiana HOM05D004440 ORTHO05D005183 2.7e-07 59.3 86 38.4


User provided reference genes

Program Settings