Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1186.8 610 100.0
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1162.9 608 97.7
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1088.2 611 91.2
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 2.2e-303 1045.0 611 87.4
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.3e-287 992.6 533 97.0
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 5.3e-273 944.1 612 79.1
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 1.2e-272 943.0 614 79.5
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 1.5e-272 942.6 612 78.9
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 3.7e-266 921.4 612 78.1
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 1.4e-262 909.4 611 75.5
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 7.9e-261 903.7 614 76.5
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 1.1e-257 893.3 612 75.5
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 7.4e-251 870.5 612 74.7
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 9.4e-246 853.6 442 98.6
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.1e-241 838.2 436 98.6
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 1.5e-214 750.0 612 63.9
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 1.0e-212 743.8 612 63.4
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 2.7e-208 729.2 653 59.4
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 8.6e-207 724.2 612 60.9
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 1.1e-206 723.8 613 62.2
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 3.3e-206 722.2 612 61.8
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 1.8e-204 716.5 611 60.1
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 1.3e-202 710.3 612 59.5
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 2.8e-202 709.1 611 59.4
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 3.9e-199 698.7 612 58.5
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 8.6e-199 697.6 612 60.8
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 5.6e-198 694.9 612 58.3
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 9.5e-198 694.1 612 60.9
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 2.1e-197 693.0 611 58.4
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 8.0e-197 691.0 612 56.9
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 2.3e-196 689.5 612 59.3
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 1.2e-195 687.2 616 57.8
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 1.7e-194 683.3 612 58.0
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 1.4e-193 680.2 612 58.3
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 2.4e-193 679.5 612 57.5
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 2.4e-193 679.5 612 57.5
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 2.0e-192 676.4 612 57.5
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 2.7e-192 676.0 617 57.9
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 8.6e-191 671.0 611 57.3
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 7.3e-190 667.9 611 57.3
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 4.7e-189 665.2 611 57.1
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 3.0e-183 646.0 612 56.2
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 3.9e-183 645.6 611 55.5
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 8.6e-183 644.4 613 54.3
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 4.7e-181 638.6 611 54.2
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 6.2e-181 638.3 660 53.3
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 3.1e-180 636.0 612 55.2
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 1.2e-179 634.0 613 53.8
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 8.3e-178 627.9 613 53.8
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 1.1e-177 627.5 623 53.8
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 3.5e-176 622.5 614 54.1
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 1.0e-175 620.9 615 53.3
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 2.3e-175 619.8 612 53.4
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 8.1e-173 611.3 616 53.2
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 4.0e-172 609.0 613 52.4
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 1.5e-171 607.1 613 52.7
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 1.7e-170 603.6 619 52.2
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 4.9e-170 602.1 616 52.9
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 3.5e-168 595.9 608 52.6
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 1.3e-167 594.0 612 51.0
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 8.7e-167 591.3 614 51.5
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 4.8e-165 585.5 616 51.9
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 4.8e-165 585.5 613 50.7
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 1.8e-164 583.6 612 50.8
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 2.0e-163 580.1 611 50.6
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 5.8e-163 578.6 611 50.7
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 1.7e-162 577.0 611 48.8
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 1.7e-162 577.0 610 49.8
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 6.4e-162 575.1 611 48.4
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 1.1e-161 574.3 611 49.4
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 1.4e-161 573.9 611 48.8
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 4.2e-161 572.4 615 48.8
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 5.4e-161 572.0 615 48.8
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 7.1e-161 571.6 631 50.4
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 9.3e-161 571.2 613 48.9
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 2.7e-160 569.7 614 48.7
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 2.7e-160 569.7 614 48.7
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 2.7e-160 569.7 614 48.7
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 1.7e-159 567.0 611 48.8
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 3.3e-158 562.8 614 50.2
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.3e-157 560.8 612 49.0
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.6e-157 560.5 612 49.0
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 4.0e-156 555.8 612 48.9
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.3e-151 540.8 612 50.7
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 1.6e-149 533.9 612 46.7
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 1.5e-142 510.8 482 57.5
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.1e-141 506.9 269 97.8
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 2.9e-138 496.5 613 46.7
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 9.3e-137 491.5 612 44.6
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 1.9e-134 483.8 613 44.0
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 4.3e-126 456.1 614 44.1
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 9.7e-126 454.9 404 58.7
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 5.3e-124 449.1 453 53.9
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 1.0e-122 444.9 610 42.0
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 3.8e-122 443.0 479 51.1
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 5.2e-111 406.0 338 61.8
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 6.3e-109 399.1 520 45.6
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 3.0e-95 353.6 352 56.5
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 5.9e-91 339.3 611 37.5
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.5e-89 334.0 299 59.5
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.4e-87 328.2 444 42.6
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 8.9e-87 325.5 285 60.0
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 7.1e-68 262.7 610 32.3
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 1.0e-66 258.8 661 30.4
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 8.6e-66 255.8 146 90.4
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 3.5e-59 233.8 260 52.7
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 6.9e-47 193.0 130 70.8
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.5e-46 191.8 185 53.5
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 2.0e-46 191.4 620 26.8
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 4.3e-41 173.7 161 54.0
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 8.7e-34 149.4 184 45.7
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 1.1e-33 149.1 728 24.5
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 3.8e-29 134.0 98 68.4
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 5.5e-28 130.2 205 39.0
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 1.9e-25 121.7 90 63.3
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 2.2e-21 108.2 76 64.5
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 7.9e-19 99.8 78 60.3
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 3.3e-17 94.4 69 71.0
Psat3g106080 Pisum sativum HOM05D003926 ORTHO05D005273 3.8e-13 80.9 69 58.0
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.9e-12 78.6 69 59.4
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 2.3e-10 71.6 122 33.6
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 2.3e-10 71.6 59 55.9
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 2.3e-10 71.6 59 55.9
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 2.3e-10 71.6 81 40.7
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 3.1e-07 61.2 49 57.1
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 9.1e-07 59.7 116 31.9


User provided reference genes

Program Settings