Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.2e-60 234.2 118 100.0
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.2e-60 234.2 118 100.0
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 6.6e-55 217.2 118 91.5
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 1.1e-44 183.3 104 87.5
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 9.8e-43 176.8 105 82.9
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 7.1e-41 170.6 104 79.8
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 9.2e-41 170.2 105 80.0
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 6.0e-40 167.5 104 77.9
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 6.6e-39 164.1 105 79.0
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 3.3e-38 161.8 104 77.9
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 7.3e-38 160.6 106 76.4
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 1.6e-37 159.5 106 76.4
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 6.0e-32 141.0 104 63.5
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.5e-30 136.3 104 61.5
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 1.2e-29 133.3 104 60.6
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 3.1e-28 128.6 104 58.7
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 1.2e-27 126.7 106 63.2
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 1.5e-27 126.3 104 60.6
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 3.4e-27 125.2 107 58.9
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 4.4e-27 124.8 104 59.6
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 4.4e-27 124.8 107 59.8
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 7.6e-27 124.0 104 58.7
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 1.3e-26 123.2 105 61.9
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 1.7e-26 122.9 105 55.2
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.7e-26 122.9 105 61.9
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.7e-26 122.9 105 61.0
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.7e-26 122.9 104 58.7
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 2.9e-26 122.1 106 58.5
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 3.8e-26 121.7 102 55.9
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 4.9e-26 121.3 104 56.7
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 4.9e-26 121.3 104 55.8
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 6.4e-26 120.9 105 57.1
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 8.4e-26 120.6 107 61.7
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.4e-25 119.8 104 55.8
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.9e-25 119.4 106 59.4
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 2.4e-25 119.0 106 56.6
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 5.4e-25 117.9 117 51.3
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 9.3e-25 117.1 106 58.5
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 6.0e-24 114.4 109 54.1
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 6.0e-24 114.4 104 54.8
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 7.8e-24 114.0 104 54.8
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 3.9e-23 111.7 104 53.8
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 3.9e-23 111.7 104 54.8
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 6.6e-23 110.9 105 52.4
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 6.6e-23 110.9 105 55.2
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 6.6e-23 110.9 104 54.8
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 1.5e-22 109.8 101 53.5
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 1.5e-22 109.8 104 56.7
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 2.5e-22 109.0 104 54.8
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 5.6e-22 107.8 108 52.8
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 7.3e-22 107.5 104 54.8
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 7.3e-22 107.5 106 51.9
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 7.3e-22 107.5 111 47.7
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 7.3e-22 107.5 116 49.1
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 1.6e-21 106.3 116 49.1
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 1.6e-21 106.3 102 51.0
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 1.6e-21 106.3 103 53.4
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 3.6e-21 105.1 113 46.9
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 4.8e-21 104.8 101 50.5
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 4.8e-21 104.8 105 49.5
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 6.2e-21 104.4 104 49.0
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 1.1e-20 103.6 103 52.4
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 3.1e-20 102.1 104 50.0
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 3.1e-20 102.1 104 50.0
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 5.3e-20 101.3 101 49.5
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 5.3e-20 101.3 105 52.4
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 6.9e-20 100.9 105 52.4
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 1.5e-19 99.8 101 50.5
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 3.4e-19 98.6 104 51.0
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 1.3e-18 96.7 104 46.2
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 2.2e-18 95.9 104 46.2
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 2.9e-18 95.5 104 46.2
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 2.9e-18 95.5 105 46.7
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 3.8e-18 95.1 104 52.9
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 3.8e-18 95.1 104 53.8
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 3.8e-18 95.1 106 46.2
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 4.9e-18 94.7 104 46.2
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 4.9e-18 94.7 104 46.2
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 4.9e-18 94.7 104 46.2
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 8.4e-18 94.0 104 46.2
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 1.4e-17 93.2 105 48.6
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 4.2e-17 91.7 105 47.6
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 2.7e-16 89.0 105 47.6
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 3.5e-16 88.6 104 48.1
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 7.9e-16 87.4 104 47.1
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 1.3e-15 86.7 102 45.1
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 1.3e-15 86.7 105 45.7
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 1.3e-15 86.7 74 60.8
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 8.7e-15 84.0 104 43.3
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 5.6e-14 81.3 101 43.6
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 1.6e-13 79.7 106 43.4
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 4.0e-12 75.1 106 42.5
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 3.4e-11 72.0 109 41.3
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 4.5e-11 71.6 106 42.5
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 4.5e-11 71.6 102 35.3
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 4.5e-11 71.6 83 54.2
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 1.7e-10 69.7 102 36.3
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.9e-10 68.9 35 100.0
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.9e-09 66.2 102 32.4
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.5e-06 56.6 41 63.4


User provided reference genes

Program Settings