Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 3855.1 1948 100.0
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 3437.9 2249 79.7
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 3429.8 1951 88.8
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 3074.6 1958 79.6
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 3008.8 1956 77.8
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2999.1 1957 77.5
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2994.1 1957 77.5
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2986.8 1938 77.8
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2967.9 1930 77.3
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2915.2 1971 75.2
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2476.4 1965 64.2
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2474.5 1967 64.2
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2470.3 1969 64.0
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2460.3 1965 63.7
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2449.1 1962 63.0
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2429.4 1969 62.2
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2400.2 1990 62.3
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2376.7 1975 61.9
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2359.7 1969 61.5
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2352.8 1954 61.2
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2348.9 1965 61.2
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2347.4 1961 60.9
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2341.2 1959 61.5
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2327.0 2049 59.0
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2322.0 1968 60.6
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2313.5 1961 60.0
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2285.8 1968 59.1
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2282.7 1966 59.5
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2275.7 1966 58.9
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2264.6 1957 59.7
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2238.4 1963 58.2
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2215.7 2169 54.1
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2211.4 2158 54.4
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2191.4 1847 59.8
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2180.6 1953 56.3
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2174.4 1966 57.5
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2167.5 1961 58.1
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2166.7 1939 56.4
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2164.4 1956 55.9
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2161.7 1965 55.8
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2160.2 1976 55.6
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2153.6 1958 57.5
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 2151.3 1961 57.3
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2140.9 1973 55.4
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2134.0 2143 53.2
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 2132.8 1965 56.4
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 2129.8 1950 56.7
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 2129.8 1937 57.1
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 2128.2 1941 56.8
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2128.2 1942 55.4
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2122.8 1935 56.9
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 2119.4 1808 59.4
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 2117.8 1981 55.8
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 2114.7 1972 56.0
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2110.9 1992 55.6
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 2109.7 1962 56.6
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2109.3 1962 55.6
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2107.0 1967 55.6
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 2102.0 1967 56.1
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2101.2 1994 55.4
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2089.7 1962 55.2
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2085.1 1938 54.7
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 2071.2 2008 54.2
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2071.2 1813 57.0
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2070.0 1962 54.8
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 2056.6 1937 54.9
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2050.0 1947 54.6
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2050.0 1936 53.7
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 2023.4 1600 63.9
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 2012.7 1953 54.7
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1981.5 1954 53.1
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1964.1 1932 53.1
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1951.8 1971 52.4
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1942.5 1830 55.6
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1876.7 1969 50.9
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1870.5 1939 51.3
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1789.2 1979 48.1
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1539.6 1182 64.9
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1445.3 1265 59.2
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1444.5 1286 57.0
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1401.3 1827 42.7
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1295.0 2065 37.7
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1260.0 2017 38.8
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1244.2 1080 59.1
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1193.3 2036 36.0
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1169.8 1426 45.2
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1149.8 1002 58.6
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1085.9 1158 49.7
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 9.2e-295 1018.1 2138 32.7
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.5e-265 921.0 886 55.0
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.5e-265 921.0 783 59.8
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.6e-254 884.4 1012 48.8
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 6.0e-254 882.5 663 69.8
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 2.8e-251 873.6 956 49.7
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 1.8e-242 844.3 777 56.5
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 8.2e-235 818.9 1123 42.5
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.1e-220 771.9 983 44.6
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 1.5e-164 585.5 494 61.5
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 1.6e-161 575.5 527 56.2
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 8.1e-158 563.1 534 53.2
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 2.3e-157 561.6 522 57.5
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 3.9e-144 517.7 306 83.7
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 2.1e-142 511.9 452 56.0
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 4.3e-135 487.6 431 55.2
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 2.9e-131 474.9 398 61.1
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 3.3e-127 461.5 654 43.0
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 6.1e-113 414.1 854 33.3
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 8.5e-99 367.1 332 57.5
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 3.9e-96 358.2 290 70.0
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.2e-92 346.7 392 46.2
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 2.9e-91 342.0 258 62.4
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 1.5e-90 339.7 224 75.4
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 7.7e-84 317.4 320 55.6
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 3.5e-68 265.4 233 59.2
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 4.2e-66 258.5 227 56.4
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.4e-61 243.4 163 74.8
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 2.3e-59 236.1 374 40.1
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 5.6e-58 231.5 189 57.7
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 1.0e-56 227.3 189 56.1
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 1.1e-53 217.2 288 45.8
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.9e-53 216.5 315 41.3
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 1.2e-44 187.2 517 26.7
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.6e-44 186.8 299 36.5
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 6.6e-43 181.4 224 50.0
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 2.3e-40 172.9 293 37.9
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 4.9e-38 165.2 289 38.8
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 7.8e-36 157.9 142 59.9
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 4.3e-34 152.1 93 83.9
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 8.9e-32 144.4 191 44.0
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 5.4e-29 135.2 113 62.8
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 2.7e-28 132.9 138 48.6
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 3.0e-27 129.4 132 50.0
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 2.1e-25 123.2 128 48.4
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.5e-23 117.1 88 62.5
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 9.9e-23 114.4 94 59.6
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 3.8e-22 112.5 92 56.5
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 4.9e-22 112.1 149 45.0
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 4.2e-21 109.0 159 44.0
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 9.6e-18 97.8 143 42.7
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 1.4e-16 94.0 105 42.9
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 3.1e-16 92.8 89 55.1
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 3.4e-15 89.4 71 59.2
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 6.4e-14 85.1 54 72.2
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.4e-13 84.0 106 42.5
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.4e-13 84.0 106 42.5
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 1.9e-13 83.6 54 72.2
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.2e-13 82.8 106 41.5
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 4.2e-13 82.4 53 71.7
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 3.5e-12 79.3 118 38.1
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 7.9e-12 78.2 204 28.4
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 3.9e-11 75.9 88 43.2
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 7.4e-10 71.6 95 38.9
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 9.6e-10 71.2 153 33.3
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 1.6e-09 70.5 114 38.6
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 1.6e-09 70.5 114 38.6
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 3.7e-09 69.3 112 38.4
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 4.8e-09 68.9 134 32.1
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 5.3e-08 65.5 74 41.9
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 1.5e-07 63.9 48 66.7


User provided reference genes

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