Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G005500 Phaseolus vulgaris HOM05D000747 ORTHO05D031555 1.3e-32 142.5 74 100.0
Phvul.004G009400 Phaseolus vulgaris HOM05D000747 ORTHO05D031555 1.3e-32 142.5 74 100.0
Phvul.006G120900 Phaseolus vulgaris HOM05D000747 ORTHO05D004807 2.4e-23 111.7 64 92.2
Glyma.15G137000 Glycine max HOM05D000747 ORTHO05D004807 3.0e-21 104.8 64 87.5
Glyma.17G037600 Glycine max HOM05D000747 ORTHO05D004807 2.4e-18 95.1 60 83.3
Lalb_Chr15g0089041 Lupinus albus HOM05D000747 ORTHO05D004807 4.0e-18 94.4 73 71.2
arahy.Tifrunner.gnm1.ann1.R130QB Arachis hypogaea HOM05D000747 ORTHO05D004807 6.9e-18 93.6 73 69.9
arahy.Tifrunner.gnm1.ann1.YUC3W2 Arachis hypogaea HOM05D000747 ORTHO05D004807 6.9e-18 93.6 73 69.9
Lj6g0013861 Lotus japonicus HOM05D000747 ORTHO05D004807 9.0e-18 93.2 59 81.4
Glyma.07G235800 Glycine max HOM05D000747 ORTHO05D004807 1.5e-17 92.4 60 81.7
Phvul.003G118500 Phaseolus vulgaris HOM05D000747 ORTHO05D004807 1.5e-17 92.4 73 69.9
arahy.Tifrunner.gnm1.ann1.G3UT94 Arachis hypogaea HOM05D000747 ORTHO05D031555 2.9e-16 88.2 73 65.8
Psat1g162680 Pisum sativum HOM05D000747 ORTHO05D004807 3.8e-16 87.8 73 65.8
Medtr2g033040 Medicago truncatula HOM05D000747 ORTHO05D004807 4.9e-16 87.4 73 65.8
arahy.Tifrunner.gnm1.ann1.CPQB8S Arachis hypogaea HOM05D000747 ORTHO05D004807 6.4e-16 87.0 73 67.1
arahy.Tifrunner.gnm1.ann1.NSV5VW Arachis hypogaea HOM05D000747 ORTHO05D004807 6.4e-16 87.0 73 67.1
Ca_00947_v3 Cicer arietinum L. HOM05D000747 ORTHO05D004807 6.4e-16 87.0 73 65.8
TPR.G10108 Trifolium pratense HOM05D000747 ORTHO05D004807 1.9e-15 85.5 59 74.6
VMungo1215G1053 Vigna mungo HOM05D000747 ORTHO05D004807 2.4e-15 85.1 73 65.8
CiPaw.01G133500 Carya illinoinensis HOM05D000747 ORTHO05D004807 7.1e-15 83.6 65 66.2
AUR62002590 Chenopodium quinoa HOM05D000747 ORTHO05D004807 1.6e-14 82.4 60 71.7
AUR62030014 Chenopodium quinoa HOM05D000747 ORTHO05D004807 1.6e-14 82.4 60 71.7
FvH4_4g20760 Fragaria vesca HOM05D000747 ORTHO05D004807 4.6e-14 80.9 59 72.9
FAN17G1353 Fragaria x ananassa HOM05D000747 ORTHO05D004807 4.6e-14 80.9 59 72.9
QL06p013303 Quercus lobata HOM05D000747 ORTHO05D004807 4.6e-14 80.9 65 63.1
Manes.03G208600 Manihot esculenta HOM05D000747 ORTHO05D004807 7.9e-14 80.1 59 71.2
Dinv15128 Davidia involucrata HOM05D000747 ORTHO05D004807 1.8e-13 79.0 59 69.5
FAN07G0175 Fragaria x ananassa HOM05D000747 ORTHO05D004807 1.8e-13 79.0 59 71.2
Hund28791 Selenicereus undatus HOM05D000747 ORTHO05D004807 1.8e-13 79.0 60 68.3
Hund28792 Selenicereus undatus HOM05D000747 ORTHO05D004807 1.8e-13 79.0 60 68.3
Solyc01g057900.3 Solanum lycopersicum HOM05D000747 ORTHO05D004807 2.3e-13 78.6 59 67.8
Sopen01g023220 Solanum pennellii HOM05D000747 ORTHO05D004807 2.3e-13 78.6 59 67.8
TAR362G0993 Trochodendron aralioides HOM05D000747 ORTHO05D004807 2.3e-13 78.6 49 81.6
Ah.07g203890 Amaranthus hybridus HOM05D000747 ORTHO05D004807 3.0e-13 78.2 60 63.3
Medtr2g033055 Medicago truncatula HOM05D000747 ORTHO05D004807 3.0e-13 78.2 73 61.6
RcHm_v2.0_Chr4g0426201 Rosa chinensis HOM05D000747 ORTHO05D004807 3.0e-13 78.2 59 71.2
CSS0023043 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D004807 3.9e-13 77.8 48 77.1
Nitab4.5_0001334g0040 Nicotiana tabacum HOM05D000747 ORTHO05D004807 5.1e-13 77.4 59 67.8
TAR633G1529 Trochodendron aralioides HOM05D000747 ORTHO05D004807 5.1e-13 77.4 49 77.6
Atru.chr4.3105 Acer truncatum HOM05D000747 ORTHO05D004807 6.7e-13 77.0 59 64.4
Actinidia18481 Actinidia chinensis HOM05D000747 ORTHO05D004807 8.7e-13 76.6 49 75.5
CANSAT78G0170 Cannabis sativa HOM05D000747 ORTHO05D004807 8.7e-13 76.6 58 69.0
Haze_00834 Corylus avellana HOM05D000747 ORTHO05D004807 8.7e-13 76.6 65 61.5
Nitab4.5_0005403g0020 Nicotiana tabacum HOM05D000747 ORTHO05D004807 8.7e-13 76.6 59 67.8
Potri.008G101300 Populus trichocarpa HOM05D000747 ORTHO05D004807 8.7e-13 76.6 51 70.6
Rhsim04G0243000 Rhododendron simsii HOM05D000747 ORTHO05D004807 8.7e-13 76.6 49 77.6
Sabra10G0115600 Salix brachista HOM05D000747 ORTHO05D004807 1.1e-12 76.3 51 70.6
vmacro07974 Vaccinium macrocarpon HOM05D000747 ORTHO05D004807 1.1e-12 76.3 49 75.5
MD16G1148200 Malus domestica HOM05D000747 ORTHO05D004807 1.5e-12 75.9 64 62.5
Nn3g21805 Nelumbo nucifera HOM05D000747 ORTHO05D004807 1.5e-12 75.9 51 76.5
Oeu052157.1 Olea europaea HOM05D000747 ORTHO05D004807 1.5e-12 75.9 60 63.3
Carub.0003s1696 Capsella rubella HOM05D000747 ORTHO05D004807 1.9e-12 75.5 64 62.5
CAN.G170.17 Capsicum annuum HOM05D000747 ORTHO05D004807 1.9e-12 75.5 59 67.8
CAN.G170.20 Capsicum annuum HOM05D000747 ORTHO05D004807 1.9e-12 75.5 59 67.8
CAN.G3221.1 Capsicum annuum HOM05D000747 ORTHO05D004807 1.9e-12 75.5 59 67.8
AT3G17205 Arabidopsis thaliana HOM05D000747 ORTHO05D004807 2.5e-12 75.1 64 62.5
AL3G30230 Arabidopsis lyrata HOM05D000747 ORTHO05D004807 3.3e-12 74.7 64 62.5
Gohir.A09G241400 Gossypium hirsutum HOM05D000747 ORTHO05D004807 3.3e-12 74.7 59 62.7
Gohir.D09G242100 Gossypium hirsutum HOM05D000747 ORTHO05D004807 3.3e-12 74.7 59 62.7
Gorai.006G265700 Gossypium raimondii HOM05D000747 ORTHO05D004807 3.3e-12 74.7 59 62.7
MD17G1270000 Malus domestica HOM05D000747 ORTHO05D004807 3.3e-12 74.7 64 60.9
Potri.010G150000 Populus trichocarpa HOM05D000747 ORTHO05D004807 3.3e-12 74.7 56 66.1
EL10Ac3g06290 Beta vulgaris HOM05D000747 ORTHO05D004807 4.3e-12 74.3 60 63.3
Eucgr.B03986 Eucalyptus grandis HOM05D000747 ORTHO05D004807 4.3e-12 74.3 49 73.5
TWI53G1735 Tripterygium wilfordii HOM05D000747 ORTHO05D004807 5.6e-12 73.9 58 65.5
Cpa.g.sc146.73 Carica papaya HOM05D000747 ORTHO05D004807 7.4e-12 73.6 51 72.5
COL.COLO4_34559 Corchorus olitorius HOM05D000747 ORTHO05D004807 9.6e-12 73.2 51 72.5
Hma1.2p1_1096F.1_g256630 Hydrangea macrophylla HOM05D000747 ORTHO05D004807 9.6e-12 73.2 59 59.3
Prupe.1G111600 Prunus persica HOM05D000747 ORTHO05D004807 9.6e-12 73.2 59 66.1
Sp3g15400 Schrenkiella parvula HOM05D000747 ORTHO05D004807 9.6e-12 73.2 51 70.6
Thecc.04G307300 Theobroma cacao HOM05D000747 ORTHO05D004807 9.6e-12 73.2 40 87.5
Sed0003045 Sechium edule HOM05D000747 ORTHO05D004807 1.3e-11 72.8 60 61.7
Sc25g0001570 Simmondsia chinensis HOM05D000747 ORTHO05D004807 1.3e-11 72.8 59 66.1
GSVIVG01034942001 Vitis vinifera HOM05D000747 ORTHO05D004807 1.3e-11 72.8 49 73.5
Cc03_g00480 Coffea canephora HOM05D000747 ORTHO05D004807 1.6e-11 72.4 59 61.0
MD13G1148100 Malus domestica HOM05D000747 ORTHO05D004807 1.6e-11 72.4 59 64.4
Sabra08G0076600 Salix brachista HOM05D000747 ORTHO05D004807 1.6e-11 72.4 49 71.4
MELO3C021252.2 Cucumis melo HOM05D000747 ORTHO05D004807 2.1e-11 72.0 59 61.0
BcaB06g25812 Brassica carinata HOM05D000747 ORTHO05D004807 2.8e-11 71.6 51 70.6
BcaC05g28820 Brassica carinata HOM05D000747 ORTHO05D004807 2.8e-11 71.6 51 70.6
A05p32580 Brassica napus HOM05D000747 ORTHO05D004807 2.8e-11 71.6 51 70.6
C05p49250 Brassica napus HOM05D000747 ORTHO05D004807 2.8e-11 71.6 51 70.6
BolC5t33666H Brassica oleracea HOM05D000747 ORTHO05D004807 2.8e-11 71.6 51 70.6
BraA05t22082Z Brassica rapa HOM05D000747 ORTHO05D004807 2.8e-11 71.6 51 70.6
CSS0019056 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D004807 2.8e-11 71.6 49 65.3
DCAR_002525 Daucus carota HOM05D000747 ORTHO05D004807 2.8e-11 71.6 60 58.3
Peaxi162Scf00126g01514 Petunia axillaris HOM05D000747 ORTHO05D004807 2.8e-11 71.6 59 64.4
Gohir.A10G175700 Gossypium hirsutum HOM05D000747 ORTHO05D004807 3.7e-11 71.2 60 61.7
SGA_v2.0_scaffold157G37358 Striga asiatica HOM05D000747 ORTHO05D004807 4.8e-11 70.9 59 61.0
THA.LOC104820321 Tarenaya hassleriana HOM05D000747 ORTHO05D004807 4.8e-11 70.9 43 79.1
Gohir.D10G182300 Gossypium hirsutum HOM05D000747 ORTHO05D004807 6.2e-11 70.5 39 84.6
Gorai.011G204200 Gossypium raimondii HOM05D000747 ORTHO05D004807 6.2e-11 70.5 39 84.6
Ciclev10004231m.g Citrus clementina HOM05D000747 ORTHO05D004807 8.1e-11 70.1 72 55.6
Duzib212G0904 Durio zibethinus HOM05D000747 ORTHO05D004807 8.1e-11 70.1 59 59.3
MBI18_g27389_MAGBIO Magnolia biondii HOM05D000747 ORTHO05D004807 8.1e-11 70.1 39 84.6
SalBow8G3583 Salvia bowleyana HOM05D000747 ORTHO05D004807 8.1e-11 70.1 49 67.3
Sed0005984 Sechium edule HOM05D000747 ORTHO05D004807 8.1e-11 70.1 59 61.0
Migut.G00024 Erythranthe guttata HOM05D000747 ORTHO05D004807 1.1e-10 69.7 59 57.6
Duzib151G0433 Durio zibethinus HOM05D000747 ORTHO05D004807 1.4e-10 69.3 40 80.0
Aqoxy2G02629 Aquilegia oxysepala HOM05D000747 ORTHO05D004807 1.8e-10 68.9 49 69.4
Duzib052G0753 Durio zibethinus HOM05D000747 ORTHO05D004807 1.8e-10 68.9 40 80.0
unitig_88.g27699 Utricularia gibba HOM05D000747 ORTHO05D004807 1.8e-10 68.9 46 71.7
BcaC09g48678 Brassica carinata HOM05D000747 ORTHO05D004807 2.4e-10 68.6 64 57.8
C01p47020 Brassica napus HOM05D000747 ORTHO05D004807 2.4e-10 68.6 64 57.8
BolC1t04670H Brassica oleracea HOM05D000747 ORTHO05D004807 2.4e-10 68.6 64 57.8
BraA01t03772Z Brassica rapa HOM05D000747 ORTHO05D004807 2.4e-10 68.6 64 57.8
ECA233G3437 Erigeron canadensis HOM05D000747 ORTHO05D004807 5.3e-10 67.4 59 61.0
MSTRG.10174 Avicennia marina HOM05D000747 ORTHO05D004807 6.9e-10 67.0 46 69.6
HanXRQChr06g0182841 Helianthus annuus HOM05D000747 ORTHO05D004807 9.0e-10 66.6 79 48.1
A01p37100 Brassica napus HOM05D000747 ORTHO05D004807 2.0e-09 65.5 46 69.6
PSO210G6954 Papaver somniferum HOM05D000747 ORTHO05D004807 2.6e-09 65.1 65 50.8
PSO761G0701 Papaver somniferum HOM05D000747 ORTHO05D004807 2.6e-09 65.1 65 50.8
ATR0693G276 Amborella trichopoda HOM05D000747 ORTHO05D004807 3.4e-09 64.7 49 65.3
SEGI_11859 Sequoiadendron giganteum HOM05D000747 ORTHO05D004807 5.8e-09 63.9 39 71.8
Zm00001eb412620 Zea mays HOM05D000747 ORTHO05D004807 1.0e-08 63.2 59 54.2
BcaB04g20855 Brassica carinata HOM05D000747 ORTHO05D004807 1.3e-08 62.8 51 64.7
CDE05G1257 Ceratophyllum demersum HOM05D000747 ORTHO05D004807 3.8e-08 61.2 39 74.4
Os05g0159000 Oryza sativa ssp. japonica HOM05D000747 ORTHO05D004807 3.8e-08 61.2 50 58.0
PGR031G1986 Punica granatum HOM05D000747 ORTHO05D004807 3.8e-08 61.2 65 50.8
Zm00001eb282520 Zea mays HOM05D000747 ORTHO05D004807 4.9e-08 60.8 59 54.2
Aa31LG8G4180 Aethionema arabicum HOM05D000747 ORTHO05D004807 6.5e-08 60.5 49 61.2
HPP92_015992 Vanilla planifolia HOM05D000747 ORTHO05D004807 1.1e-07 59.7 39 66.7
HPP92_015995 Vanilla planifolia HOM05D000747 ORTHO05D004807 1.1e-07 59.7 39 66.7
CDE11G0596 Ceratophyllum demersum HOM05D000747 ORTHO05D004807 1.4e-07 59.3 39 71.8
Lsat_1_v5_gn_6_70541 Lactuca sativa HOM05D000747 ORTHO05D004807 3.2e-07 58.2 59 54.2
Aqoxy5G03355 Aquilegia oxysepala HOM05D000747 ORTHO05D004807 1.2e-06 56.2 39 69.2
SHI00091 Sapria himalayana HOM05D000747 ORTHO05D004807 2.7e-06 55.1 40 65.0
Mapoly0140s0005 Marchantia polymorpha HOM05D000747 ORTHO05D004807 3.5e-06 54.7 39 59.0
Pp3c17_16520 Physcomitrium patens HOM05D000747 ORTHO05D004807 3.5e-06 54.7 39 61.5


User provided reference genes

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