Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 1.6e-200 702.6 374 100.0
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 2.9e-181 638.6 377 87.5
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 1.9e-164 582.8 375 80.8
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 1.5e-158 563.1 332 84.6
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 1.3e-157 560.1 332 84.0
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 1.2e-155 553.5 329 84.2
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 3.9e-154 548.5 332 83.1
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 5.0e-141 505.0 333 76.0
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 3.2e-140 502.3 332 75.6
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.6e-139 500.0 360 70.3
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 2.1e-139 499.6 360 70.3
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 2.7e-139 499.2 332 75.3
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 1.4e-138 496.9 357 72.0
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 1.8e-138 496.5 333 73.6
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 1.2e-137 493.8 331 73.4
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 1.5e-137 493.4 329 74.5
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 2.0e-137 493.0 332 72.9
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 2.6e-137 492.7 332 72.9
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 5.7e-137 491.5 332 73.8
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 1.7e-136 490.0 332 74.1
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 1.8e-135 486.5 333 73.0
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 9.1e-135 484.2 333 72.7
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 1.2e-134 483.8 333 72.1
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 1.6e-134 483.4 333 72.7
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 1.6e-134 483.4 333 72.4
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 2.7e-134 482.6 330 73.0
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 5.9e-134 481.5 331 73.4
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 1.0e-133 480.7 333 72.4
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 1.0e-133 480.7 333 72.4
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.0e-133 480.7 331 72.2
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 1.3e-133 480.3 333 72.7
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 1.7e-133 479.9 338 73.7
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 2.3e-133 479.6 333 72.7
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 2.9e-133 479.2 333 73.0
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 3.8e-133 478.8 365 69.3
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 8.6e-133 477.6 333 72.7
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 8.6e-133 477.6 333 72.7
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 4.2e-132 475.3 332 70.8
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 5.5e-132 474.9 334 70.1
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 1.2e-131 473.8 332 72.6
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 2.1e-131 473.0 333 72.1
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 4.7e-131 471.9 332 71.1
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 4.7e-131 471.9 331 73.1
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 1.0e-130 470.7 334 69.5
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 1.4e-130 470.3 333 71.8
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 3.0e-130 469.2 333 71.2
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 5.2e-130 468.4 331 71.6
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.5e-129 466.8 333 70.9
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.0e-129 466.5 330 71.5
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 2.0e-129 466.5 333 70.6
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 2.6e-129 466.1 333 69.1
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 2.6e-129 466.1 333 69.4
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 4.4e-129 465.3 352 67.6
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 5.7e-129 464.9 334 69.8
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 7.5e-129 464.5 330 71.8
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 2.2e-128 463.0 357 67.8
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 4.9e-128 461.8 329 70.5
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 4.9e-128 461.8 334 71.0
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 6.3e-128 461.5 333 69.7
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 1.8e-127 459.9 334 68.6
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 2.4e-127 459.5 334 69.2
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 2.4e-127 459.5 354 68.4
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 2.4e-127 459.5 333 68.2
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 3.1e-127 459.1 331 69.8
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 4.1e-127 458.8 329 69.9
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.6e-126 456.8 332 70.5
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 4.5e-126 455.3 338 67.8
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 6.6e-125 451.4 320 71.6
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 7.3e-124 448.0 363 64.7
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.4e-122 443.7 370 61.4
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 8.9e-122 441.0 386 61.1
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 2.7e-118 429.5 331 68.0
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 3.5e-118 429.1 280 76.8
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 5.0e-117 425.2 331 63.7
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.9e-116 423.3 333 65.2
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.5e-116 422.9 349 61.6
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 4.3e-116 422.2 354 64.4
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 7.3e-116 421.4 330 62.4
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 8.0e-115 417.9 335 66.0
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 1.1e-114 417.5 398 59.3
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 2.0e-113 413.3 332 66.6
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 1.3e-112 410.6 313 65.8
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 1.7e-109 400.2 235 86.0
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 1.1e-108 397.5 313 64.5
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 3.1e-106 389.4 300 66.0
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 4.1e-103 379.0 334 57.8
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 5.4e-103 378.6 261 71.6
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.1e-102 376.7 330 61.5
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.3e-101 373.2 358 55.9
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 3.0e-101 372.9 329 58.4
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 4.3e-100 369.0 330 55.8
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 2.1e-99 366.7 236 78.4
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 6.2e-99 365.2 235 79.1
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.8e-98 363.6 235 77.4
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 6.4e-96 355.1 235 76.2
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 1.0e-93 347.8 282 64.2
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 1.7e-93 347.1 232 75.0
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 8.7e-93 344.7 235 74.0
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 2.0e-89 333.6 235 71.9
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.0e-89 333.6 312 54.8
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 2.2e-88 330.1 235 71.5
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 2.7e-86 323.2 351 50.4
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 2.0e-81 307.0 205 76.1
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 1.6e-78 297.4 311 51.8
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.8e-77 293.9 339 48.4
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 2.4e-74 283.5 197 74.1
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 9.0e-66 255.0 344 43.0
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 7.4e-60 235.3 184 64.7
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 2.6e-57 226.9 436 36.2
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 4.8e-51 206.1 378 36.0
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 5.3e-50 202.6 219 52.5
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.6e-49 200.3 240 47.1
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 3.6e-38 163.3 311 32.8
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.4e-37 161.4 117 68.4
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 5.7e-36 156.0 110 71.8
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 9.7e-36 155.2 181 48.6
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 3.8e-32 143.3 145 50.3
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.4e-28 130.2 135 52.6
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 5.7e-28 129.4 96 65.6
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.7e-25 120.6 118 49.2
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.3e-24 118.2 79 74.7
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 3.2e-23 113.6 75 70.7
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 3.6e-22 110.2 73 69.9
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 4.0e-21 106.7 81 64.2
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.0e-20 104.4 77 71.4
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 5.7e-20 102.8 227 31.7
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 9.8e-12 75.5 63 61.9
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 8.6e-08 62.4 149 31.5
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 1.6e-06 58.2 101 35.6
Ah.10g037930 Amaranthus hybridus HOM05D006412 ORTHO05D008025 3.6e-06 57.0 29 89.7
Cre10.g430450 Chlamydomonas reinhardtii HOM05D003894 ORTHO05D004584 3.6e-06 57.0 112 33.0
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 4.7e-06 56.6 142 28.2
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 4.7e-06 56.6 120 30.0
Nitab4.5_0001381g0150 Nicotiana tabacum HOM05D003894 ORTHO05D004584 6.1e-06 56.2 120 30.0
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 6.1e-06 56.2 127 28.3
Peaxi162Scf01022g00325 Petunia axillaris HOM05D003894 ORTHO05D004584 8.0e-06 55.8 120 29.2
PRCOL_00004292 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 8.0e-06 55.8 102 34.3


User provided reference genes

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