Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 6.5e-79 297.4 154 100.0
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 1.4e-65 253.1 154 83.8
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 7.8e-48 194.1 142 71.8
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 1.7e-39 166.4 114 75.4
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 2.8e-37 159.1 165 55.8
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.6e-32 143.3 111 60.4
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 1.6e-32 143.3 162 51.2
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 2.7e-32 142.5 163 49.7
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 2.7e-32 142.5 113 61.1
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 4.6e-32 141.7 111 59.5
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 4.6e-32 141.7 111 59.5
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 3.0e-31 139.0 106 62.3
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 5.1e-31 138.3 147 50.3
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 5.1e-31 138.3 82 73.2
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 6.6e-31 137.9 82 74.4
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 8.6e-31 137.5 87 72.4
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 8.6e-31 137.5 153 49.0
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 1.1e-30 137.1 163 51.5
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 3.3e-30 135.6 78 76.9
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 1.2e-29 133.7 134 51.5
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 1.6e-29 133.3 166 48.2
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 2.8e-29 132.5 79 73.4
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 2.8e-29 132.5 132 51.5
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 3.6e-29 132.1 80 76.2
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 4.7e-29 131.7 86 67.4
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 8.1e-29 131.0 97 60.8
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 8.1e-29 131.0 104 57.7
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.8e-28 129.8 92 60.9
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.8e-28 129.8 87 63.2
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 1.8e-28 129.8 114 57.9
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 2.4e-28 129.4 135 48.9
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 2.4e-28 129.4 155 45.8
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 2.4e-28 129.4 147 48.3
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 3.1e-28 129.0 129 51.9
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 4.0e-28 128.6 111 55.9
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 4.0e-28 128.6 106 58.5
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 5.2e-28 128.3 116 53.4
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 5.2e-28 128.3 116 53.4
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 5.2e-28 128.3 134 50.7
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 8.9e-28 127.5 158 46.8
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 1.5e-27 126.7 136 50.7
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 2.0e-27 126.3 80 72.5
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 2.6e-27 125.9 167 43.1
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 2.6e-27 125.9 88 71.6
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.6e-27 125.9 137 48.9
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 3.4e-27 125.6 78 70.5
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 3.4e-27 125.6 107 57.0
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 9.9e-27 124.0 159 44.0
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 9.9e-27 124.0 159 44.0
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 9.9e-27 124.0 112 55.4
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 1.3e-26 123.6 107 57.0
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 1.7e-26 123.2 177 42.9
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 2.2e-26 122.9 173 39.9
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 2.9e-26 122.5 176 40.3
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 6.4e-26 121.3 81 65.4
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 6.4e-26 121.3 154 44.8
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 6.4e-26 121.3 152 43.4
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 1.1e-25 120.6 78 70.5
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 1.1e-25 120.6 118 49.2
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 1.4e-25 120.2 107 56.1
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 1.4e-25 120.2 137 50.4
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 1.9e-25 119.8 180 40.6
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 2.4e-25 119.4 140 47.9
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 4.2e-25 118.6 87 64.4
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 5.4e-25 118.2 168 43.5
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 5.4e-25 118.2 153 44.4
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 5.4e-25 118.2 116 50.9
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 7.1e-25 117.9 153 42.5
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 7.1e-25 117.9 160 41.2
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 2.7e-24 115.9 116 51.7
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 2.7e-24 115.9 133 48.9
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 3.5e-24 115.5 180 40.0
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 3.5e-24 115.5 125 49.6
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 4.6e-24 115.2 173 42.8
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 6.0e-24 114.8 88 58.0
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 7.8e-24 114.4 155 43.2
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 1.0e-23 114.0 83 60.2
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 1.3e-23 113.6 152 44.1
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 1.3e-23 113.6 83 60.2
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.3e-23 113.6 181 38.7
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 1.3e-23 113.6 85 60.0
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 1.7e-23 113.2 83 60.2
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 2.3e-23 112.8 72 69.4
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 2.3e-23 112.8 90 63.3
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 3.0e-23 112.5 180 38.9
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 3.0e-23 112.5 72 72.2
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 5.1e-23 111.7 72 69.4
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 6.6e-23 111.3 143 45.5
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 1.1e-22 110.5 159 44.7
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 1.5e-22 110.2 174 40.2
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 1.5e-22 110.2 131 49.6
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.5e-22 110.2 126 43.7
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 1.5e-22 110.2 158 39.2
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.5e-22 110.2 90 63.3
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 3.3e-22 109.0 80 61.2
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 3.3e-22 109.0 90 62.2
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 4.3e-22 108.6 174 40.2
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 5.6e-22 108.2 66 71.2
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 5.6e-22 108.2 66 71.2
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 7.3e-22 107.8 143 45.5
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 7.3e-22 107.8 105 53.3
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 7.3e-22 107.8 90 60.0
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 9.6e-22 107.5 79 64.6
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 1.3e-21 107.1 90 60.0
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 1.3e-21 107.1 90 60.0
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 1.3e-21 107.1 104 54.8
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.1e-21 106.3 67 68.7
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 2.8e-21 105.9 84 60.7
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 2.8e-21 105.9 94 57.4
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 3.6e-21 105.5 158 41.8
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 3.6e-21 105.5 90 55.6
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 3.6e-21 105.5 90 55.6
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 4.8e-21 105.1 93 55.9
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 4.8e-21 105.1 79 63.3
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 6.2e-21 104.8 160 40.0
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 8.1e-21 104.4 90 55.6
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 8.1e-21 104.4 125 49.6
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 8.1e-21 104.4 79 63.3
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 1.8e-20 103.2 95 49.5
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 2.4e-20 102.8 90 54.4
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 5.3e-20 101.7 118 46.6
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 6.9e-20 101.3 113 49.6
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 6.9e-20 101.3 97 51.5
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 9.0e-20 100.9 90 50.0
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 1.5e-19 100.1 171 39.2
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.0e-19 99.8 97 52.6
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 3.4e-19 99.0 83 57.8
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 4.4e-19 98.6 95 47.4
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 7.6e-19 97.8 119 44.5
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 9.9e-19 97.4 153 40.5
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 1.3e-18 97.1 111 44.1
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 1.3e-18 97.1 77 58.4
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 3.8e-18 95.5 105 48.6
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 4.9e-18 95.1 88 52.3
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 1.0e-15 87.4 88 51.1
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 1.0e-15 87.4 108 45.4
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 1.0e-15 87.4 108 45.4
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 1.3e-15 87.0 76 56.6
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 3.0e-15 85.9 71 57.7
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 8.7e-15 84.3 99 46.5
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 8.7e-15 84.3 99 46.5
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 4.3e-14 82.0 101 43.6
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 7.1e-09 64.7 80 47.5
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 2.3e-07 59.7 127 33.1
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 5.6e-06 55.1 119 40.3


User provided reference genes

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