Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 1.8e-182 642.5 326 100.0
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 1.1e-155 553.5 307 89.6
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 2.4e-155 552.4 324 86.7
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 2.2e-140 502.7 323 77.7
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 4.8e-140 501.5 336 77.1
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 3.1e-139 498.8 328 75.6
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 3.1e-139 498.8 329 75.4
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 9.1e-139 497.3 327 74.0
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 4.8e-132 474.9 327 74.3
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 8.8e-126 454.1 289 78.9
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 1.1e-115 420.6 282 73.4
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 2.0e-114 416.4 284 71.8
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 2.9e-113 412.5 284 71.8
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 1.9e-112 409.8 338 61.8
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 7.3e-112 407.9 287 73.2
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 9.5e-112 407.5 283 71.0
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 8.0e-111 404.4 284 69.7
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 2.3e-110 402.9 284 69.0
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 8.9e-110 401.0 284 68.0
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 1.2e-109 400.6 280 69.6
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 1.2e-109 400.6 282 69.1
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 2.6e-109 399.4 282 69.9
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 7.5e-109 397.9 283 68.9
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 1.3e-108 397.1 286 68.5
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 1.3e-108 397.1 284 68.3
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 1.7e-108 396.7 284 66.9
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 4.9e-108 395.2 284 67.6
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 8.3e-108 394.4 284 67.6
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 7.0e-107 391.3 284 66.9
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 1.2e-106 390.6 284 66.5
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 2.7e-106 389.4 284 66.5
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 6.0e-106 388.3 286 67.8
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 6.0e-106 388.3 283 67.8
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 1.3e-105 387.1 299 65.2
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 3.0e-105 386.0 284 66.5
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 5.0e-105 385.2 284 66.2
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 1.1e-104 384.0 283 67.1
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 1.1e-104 384.0 282 66.7
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 1.5e-104 383.6 282 68.1
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 4.3e-104 382.1 283 64.7
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 9.5e-104 380.9 288 67.0
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 2.1e-103 379.8 281 66.9
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 6.2e-103 378.3 283 65.0
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 6.2e-103 378.3 283 63.6
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 8.0e-103 377.9 281 63.7
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 1.4e-102 377.1 286 63.3
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 6.8e-102 374.8 284 62.3
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 6.8e-102 374.8 288 63.2
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 6.8e-102 374.8 280 63.6
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 8.9e-102 374.4 282 63.5
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 1.5e-101 373.6 281 66.5
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 2.0e-101 373.2 282 64.9
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 4.4e-101 372.1 282 64.9
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 7.5e-101 371.3 281 64.1
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 7.5e-101 371.3 281 64.1
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 9.8e-101 370.9 354 57.1
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 1.7e-100 370.2 281 64.4
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 1.7e-100 370.2 282 64.2
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 2.2e-100 369.8 281 63.7
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 4.9e-100 368.6 282 64.5
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 5.4e-99 365.2 283 63.3
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 9.2e-99 364.4 282 61.7
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 9.2e-99 364.4 288 63.9
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 1.2e-98 364.0 284 63.0
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 1.6e-98 363.6 282 63.5
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 4.6e-98 362.1 282 61.0
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 1.5e-96 357.1 365 55.6
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 5.6e-96 355.1 282 61.0
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 1.1e-94 350.9 286 60.8
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 1.2e-93 347.4 282 60.3
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 2.9e-92 342.8 324 55.6
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 2.9e-92 342.8 284 62.0
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 4.9e-92 342.0 283 59.7
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 4.1e-91 339.0 307 56.4
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 4.1e-91 339.0 283 59.0
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 9.5e-88 327.8 286 58.7
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 9.5e-88 327.8 284 59.5
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 1.6e-87 327.0 285 57.2
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 4.7e-87 325.5 301 55.8
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 2.4e-86 323.2 290 56.6
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 5.2e-86 322.0 284 55.6
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 9.9e-85 317.8 246 63.4
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 2.4e-83 313.2 248 60.5
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 2.1e-82 310.1 273 58.2
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 9.6e-80 301.2 267 54.7
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 2.1e-79 300.1 272 57.0
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 9.0e-78 294.7 284 54.2
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 9.0e-78 294.7 283 54.8
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-77 293.9 221 62.0
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 3.4e-77 292.7 281 53.7
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 1.9e-75 287.0 296 53.7
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 5.8e-69 265.4 200 62.0
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 2.4e-67 260.0 263 51.3
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 2.1e-63 246.9 292 43.8
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 1.4e-62 244.2 290 43.1
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 2.8e-55 219.9 314 41.4
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 4.0e-54 216.1 287 42.2
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 1.4e-51 207.6 156 62.8
AUR62043608 Chenopodium quinoa HOM05D007191 ORTHO05D009370 5.5e-51 205.7 165 58.8
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 1.9e-48 197.2 207 46.4
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 4.1e-46 189.5 153 57.5
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 3.4e-45 186.4 136 63.2
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 8.5e-44 181.8 277 39.7
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 2.8e-39 166.8 363 32.8
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 7.4e-32 142.1 295 34.2
SEGI_38116 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 9.1e-30 135.2 167 46.1
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 4.7e-26 122.9 136 45.6
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 1.7e-20 104.4 67 67.2
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 4.2e-19 99.8 99 48.5
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 9.7e-16 88.6 74 52.7
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 2.0e-13 80.9 151 35.1
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 1.5e-08 64.7 192 27.1
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 5.7e-08 62.8 155 29.7
CSS0007107 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 9.8e-08 62.0 61 50.8
CSS0022959 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 9.8e-08 62.0 61 50.8
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 9.8e-08 62.0 195 28.7
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 1.7e-07 61.2 237 25.7
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 1.7e-07 61.2 193 27.5
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 2.2e-07 60.8 147 29.3
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 2.2e-07 60.8 152 34.2
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 2.8e-07 60.5 152 33.6
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 2.8e-07 60.5 167 32.3
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 2.8e-07 60.5 182 31.3
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 3.7e-07 60.1 167 32.3
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 3.7e-07 60.1 167 32.3
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 6.3e-07 59.3 152 32.9
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 1.1e-06 58.5 152 32.9
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 1.1e-06 58.5 170 31.8
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 1.1e-06 58.5 151 31.1
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.4e-06 58.2 194 28.9
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 1.8e-06 57.8 151 30.5
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 1.8e-06 57.8 172 30.8
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 1.8e-06 57.8 176 31.2
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 2.4e-06 57.4 152 32.2
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 2.4e-06 57.4 151 30.5
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 3.1e-06 57.0 151 31.1
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 3.1e-06 57.0 152 30.9
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 4.1e-06 56.6 152 32.2
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 4.1e-06 56.6 151 29.8
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 4.1e-06 56.6 194 28.9
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 5.4e-06 56.2 151 29.8
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 5.4e-06 56.2 152 31.6
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 5.4e-06 56.2 151 30.5
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 5.4e-06 56.2 157 29.9
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 7.0e-06 55.8 152 31.6
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 7.0e-06 55.8 152 31.6
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 7.0e-06 55.8 152 31.6
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 7.0e-06 55.8 152 31.6
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 9.1e-06 55.5 152 30.9
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 9.1e-06 55.5 152 30.9
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 9.1e-06 55.5 195 27.7
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 9.1e-06 55.5 193 28.5


User provided reference genes

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