Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 5.9e-210 734.6 564 100.0
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 4.5e-162 575.5 565 82.7
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 1.8e-158 563.5 563 73.2
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 3.5e-154 549.3 566 82.0
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 1.6e-143 513.8 578 63.7
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 7.9e-114 415.2 506 54.7
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.3e-100 371.3 506 52.4
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 1.5e-96 357.8 522 48.7
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 2.7e-90 337.0 492 45.3
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 1.0e-89 335.1 523 50.5
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 3.9e-89 333.2 523 50.5
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 1.5e-85 321.2 575 48.5
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 1.3e-84 318.2 538 45.7
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 1.3e-84 318.2 538 45.7
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 1.3e-84 318.2 561 44.9
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 1.9e-83 314.3 575 51.5
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.1e-82 310.8 532 50.8
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 3.6e-82 310.1 540 44.6
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 2.2e-79 300.8 575 41.7
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 4.8e-79 299.7 536 43.3
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 4.8e-79 299.7 536 43.3
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 3.1e-78 297.0 575 42.8
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 4.1e-78 296.6 501 42.1
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 2.3e-73 280.8 525 41.0
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 4.5e-69 266.5 579 38.9
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 7.7e-69 265.8 496 39.9
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 1.7e-68 264.6 578 39.8
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 7.2e-67 259.2 548 35.8
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.5e-64 251.5 505 38.8
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.6e-64 250.8 502 38.8
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 8.3e-63 245.7 578 37.2
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 5.0e-60 236.5 534 38.8
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.5e-59 235.0 491 38.1
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 3.2e-59 233.8 540 38.9
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 7.2e-59 232.6 331 49.8
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 7.2e-59 232.6 527 40.8
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 4.7e-58 229.9 535 39.1
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 4.7e-58 229.9 535 39.1
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.8e-57 228.0 566 37.3
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 6.8e-57 226.1 321 51.7
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 5.7e-56 223.0 533 38.5
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 8.3e-55 219.2 495 35.8
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 1.1e-54 218.8 494 35.2
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.2e-53 215.3 323 52.9
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 3.5e-53 213.8 517 34.6
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 4.5e-53 213.4 283 49.1
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 7.2e-51 206.1 269 49.8
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.8e-49 201.4 334 50.3
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.8e-49 201.4 540 39.8
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.5e-48 198.4 578 32.2
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 1.5e-48 198.4 609 34.6
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 9.8e-48 195.7 551 32.3
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 1.3e-47 195.3 577 48.4
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 2.8e-47 194.1 512 37.7
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 8.3e-47 192.6 503 44.5
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 1.8e-46 191.4 503 46.7
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.8e-46 191.4 548 34.3
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 7.0e-46 189.5 535 40.4
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.2e-45 188.7 548 34.3
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 3.5e-45 187.2 517 34.0
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 4.5e-45 186.8 495 34.9
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.0e-44 183.3 491 35.0
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 6.6e-44 183.0 559 30.9
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 5.6e-43 179.9 540 34.3
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 3.6e-42 177.2 528 32.4
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 6.1e-42 176.4 473 35.5
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 8.0e-42 176.0 554 31.6
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 1.4e-41 175.3 406 36.0
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 2.6e-40 171.0 532 35.5
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.4e-40 170.6 545 30.8
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 1.3e-39 168.7 282 46.8
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 2.9e-39 167.5 332 43.7
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 6.4e-39 166.4 484 33.9
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.1e-38 165.6 541 30.7
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 1.1e-38 165.6 503 43.7
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 1.9e-38 164.9 532 37.2
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 3.2e-38 164.1 284 46.5
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 4.1e-38 163.7 241 46.5
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 5.4e-38 163.3 535 31.4
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 5.4e-38 163.3 309 42.1
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 9.2e-38 162.5 329 43.5
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 1.2e-37 162.2 318 46.2
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 2.0e-37 161.4 236 47.5
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 2.7e-37 161.0 220 49.1
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 3.5e-37 160.6 280 43.9
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 1.7e-36 158.3 541 46.8
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.3e-36 157.9 328 43.6
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 6.6e-36 156.4 323 44.0
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 6.6e-36 156.4 328 42.4
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 8.6e-36 156.0 355 36.1
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 2.5e-35 154.5 307 43.3
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 3.3e-35 154.1 212 56.6
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 3.3e-35 154.1 304 41.8
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 9.5e-35 152.5 348 42.5
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 2.8e-34 151.0 258 43.8
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 1.4e-33 148.7 510 30.0
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.3e-33 147.9 411 35.8
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 2.3e-33 147.9 194 47.9
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 5.2e-33 146.7 244 47.1
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 6.8e-33 146.4 412 35.7
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.5e-32 145.2 554 35.0
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 3.4e-32 144.1 278 46.4
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 7.5e-32 142.9 205 49.3
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.9e-31 141.0 232 40.9
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.9e-31 141.0 243 44.0
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.9e-30 138.3 234 43.6
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 4.1e-30 137.1 303 40.6
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.6e-29 135.2 244 44.3
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 2.7e-29 134.4 499 31.5
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 2.7e-29 134.4 579 29.5
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 2.7e-29 134.4 501 32.9
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 6.0e-29 133.3 247 41.3
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.0e-28 132.5 235 40.4
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 1.0e-28 132.5 244 45.1
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 1.0e-28 132.5 264 43.6
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.7e-28 131.7 316 39.2
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.7e-28 131.7 500 31.4
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 3.0e-28 131.0 232 44.4
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 6.6e-28 129.8 265 41.1
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 8.6e-28 129.4 244 45.5
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 1.1e-27 129.0 274 40.9
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 4.3e-27 127.1 250 41.6
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 9.5e-27 125.9 259 42.9
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 4.7e-26 123.6 504 30.6
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 6.2e-26 123.2 254 41.3
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 8.1e-26 122.9 488 29.1
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 1.8e-25 121.7 249 39.4
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 3.1e-25 120.9 565 38.8
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 5.2e-25 120.2 209 44.0
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 6.8e-25 119.8 507 27.0
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.1e-22 112.5 569 32.7
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 2.4e-22 111.3 523 31.4
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.1e-21 108.2 562 40.7
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 3.5e-21 107.5 161 48.4
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 1.0e-20 105.9 270 36.3
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 3.0e-20 104.4 164 43.3
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 5.1e-20 103.6 196 39.3
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.5e-19 101.3 169 42.0
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 7.3e-19 99.8 153 46.4
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 9.6e-19 99.4 539 30.2
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 1.6e-18 98.6 202 37.6
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 2.6e-16 91.3 134 43.3
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 2.6e-16 91.3 219 35.6
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 3.4e-16 90.9 169 41.4
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 5.8e-16 90.1 238 34.9
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 7.6e-16 89.7 204 36.8
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 7.6e-16 89.7 468 25.0
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 9.9e-16 89.4 109 54.1
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.2e-15 88.2 279 35.1
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 2.2e-15 88.2 352 30.4
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 3.8e-15 87.4 243 33.3
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 3.8e-15 87.4 225 34.7
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 3.8e-15 87.4 187 36.9
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 4.9e-15 87.0 233 34.3
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.1e-14 85.9 282 30.9
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.1e-14 85.9 259 34.4
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 1.6e-13 82.0 271 33.9
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 7.8e-13 79.7 207 37.2
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 6.6e-12 76.6 147 43.5
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.5e-11 75.5 105 43.8
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 1.1e-09 69.3 296 27.0
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 1.8e-09 68.6 219 31.1
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 5.3e-09 67.0 140 33.6
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 3.4e-08 64.3 86 47.7
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 3.4e-08 64.3 149 38.3
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 3.4e-08 64.3 529 25.5
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 9.9e-08 62.8 165 33.3
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 2.2e-07 61.6 237 30.4
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 3.8e-07 60.8 195 32.8
MD02G1269600 Malus domestica HOM05D003733 ORTHO05D004035 3.2e-06 57.8 131 36.6
AagrBONN_evm.TU.Sc2ySwM_117.778 Anthoceros agrestis HOM05D025130 ORTHO05D004035 4.2e-06 57.4 205 29.8
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 4.2e-06 57.4 205 31.2
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 7.1e-06 56.6 98 39.8


User provided reference genes

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