Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 3.4e-127 458.4 234 100.0
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.8e-120 436.0 234 95.3
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 6.2e-97 357.8 245 77.1
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.6e-89 333.2 177 94.9
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 7.6e-87 324.3 245 73.9
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 2.9e-78 295.8 244 66.0
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 1.1e-74 283.9 234 61.5
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 3.5e-68 262.3 245 57.6
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 1.5e-66 256.9 246 56.5
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 5.6e-66 255.0 252 56.7
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 2.8e-65 252.7 283 52.3
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 2.5e-61 239.6 232 54.3
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 5.1e-59 231.9 232 54.3
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 9.6e-58 227.6 219 55.7
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 3.7e-57 225.7 234 51.7
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 1.8e-56 223.4 141 81.6
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 1.2e-55 220.7 232 48.7
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 1.2e-55 220.7 232 48.7
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 3.8e-54 215.7 232 49.6
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 6.5e-54 214.9 232 49.6
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 8.5e-54 214.5 228 50.0
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.9e-53 213.4 232 49.6
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 1.9e-53 213.4 231 48.5
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 2.1e-52 209.9 232 48.7
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 2.7e-52 209.5 223 51.6
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 6.1e-52 208.4 227 52.4
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 1.8e-51 206.8 223 49.8
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 3.0e-51 206.1 231 47.2
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 5.1e-51 205.3 231 47.2
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 1.1e-50 204.1 234 47.4
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.5e-50 203.8 232 48.3
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 1.9e-50 203.4 231 46.8
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 1.9e-50 203.4 223 48.0
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 2.5e-50 203.0 232 47.0
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 7.4e-50 201.4 235 48.9
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 9.7e-50 201.1 232 50.0
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 9.7e-50 201.1 228 46.1
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 2.8e-49 199.5 234 45.3
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 3.7e-49 199.1 234 44.9
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 4.8e-49 198.7 232 44.8
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 1.4e-48 197.2 235 43.4
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 2.6e-47 193.0 226 43.8
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 4.5e-47 192.2 226 46.5
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 2.9e-46 189.5 239 43.5
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 5.0e-46 188.7 226 44.7
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.1e-45 187.6 252 45.6
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 1.4e-45 187.2 227 49.8
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 1.9e-45 186.8 232 49.6
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 5.5e-45 185.3 225 42.2
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 7.2e-45 184.9 232 44.0
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 7.2e-45 184.9 218 44.5
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.6e-44 183.7 225 45.8
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 2.7e-44 183.0 228 43.0
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 1.4e-43 180.6 233 43.3
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 2.3e-43 179.9 220 41.8
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 3.0e-43 179.5 230 42.6
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 5.1e-43 178.7 233 42.1
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 1.1e-42 177.6 234 42.3
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 1.1e-42 177.6 234 43.6
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 2.0e-42 176.8 233 40.8
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 2.0e-42 176.8 233 40.8
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 2.0e-42 176.8 227 43.2
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 2.6e-42 176.4 217 42.9
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 3.3e-42 176.0 233 40.8
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 3.3e-42 176.0 233 40.8
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 3.3e-42 176.0 230 40.4
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 3.3e-42 176.0 225 44.4
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 4.4e-42 175.6 224 43.8
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 5.7e-42 175.3 225 41.3
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 7.4e-42 174.9 234 42.3
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 1.3e-41 174.1 228 42.1
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 1.3e-41 174.1 221 42.5
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 1.7e-41 173.7 234 41.5
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 2.2e-41 173.3 225 42.7
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.1e-40 171.0 239 40.2
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 1.4e-40 170.6 226 41.2
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.8e-40 170.2 228 42.5
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 3.1e-40 169.5 225 41.8
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 4.1e-40 169.1 228 42.1
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 6.9e-40 168.3 253 39.1
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.2e-39 167.5 231 42.4
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 4.5e-39 165.6 221 41.6
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 5.9e-39 165.2 226 39.8
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.0e-38 164.5 231 41.6
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 1.3e-38 164.1 230 41.3
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 2.2e-38 163.3 225 40.9
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 2.2e-38 163.3 210 44.3
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 8.5e-38 161.4 221 40.3
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 1.4e-37 160.6 193 45.6
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 3.2e-37 159.5 208 46.6
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 4.2e-37 159.1 207 43.0
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 7.2e-37 158.3 260 39.6
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 1.2e-36 157.5 219 40.2
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.2e-36 157.5 225 41.3
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 6.1e-36 155.2 226 41.2
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 6.1e-36 155.2 225 37.3
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.4e-35 154.1 224 41.5
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 3.9e-35 152.5 218 40.8
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 5.2e-35 152.1 228 40.4
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 2.0e-34 150.2 218 38.5
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 4.4e-34 149.1 210 39.5
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 5.7e-34 148.7 221 40.3
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 7.4e-34 148.3 232 35.3
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 1.3e-33 147.5 253 37.5
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 1.3e-33 147.5 182 44.5
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.3e-33 147.5 202 41.6
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 1.7e-33 147.1 220 40.0
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 3.7e-33 146.0 226 37.6
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 4.5e-31 139.0 215 37.2
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 7.7e-31 138.3 221 40.7
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 1.7e-30 137.1 219 37.4
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 1.7e-30 137.1 236 35.2
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.2e-30 136.7 224 36.6
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 2.9e-30 136.3 225 36.0
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 3.8e-30 136.0 229 34.9
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 7.2e-29 131.7 228 36.4
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 7.2e-29 131.7 228 36.4
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 2.3e-27 126.7 225 39.6
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 3.0e-27 126.3 219 39.7
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 4.0e-27 125.9 159 45.3
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 2.0e-26 123.6 240 35.0
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 2.8e-25 119.8 117 48.7
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 6.3e-25 118.6 182 36.3
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 9.1e-24 114.8 138 47.1
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 3.2e-21 106.3 220 28.6
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 4.2e-21 105.9 209 31.1
Glyma.04G116200 Glycine max HOM05D005427 ORTHO05D006461 4.4e-18 95.9 54 87.0
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 2.2e-17 93.6 94 45.7
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 2.8e-17 93.2 186 35.5
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 4.8e-17 92.4 182 31.9
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 7.0e-16 88.6 74 56.8
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 2.0e-15 87.0 114 44.7
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.0e-14 84.7 76 53.9
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 2.9e-14 83.2 103 42.7
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 3.8e-14 82.8 56 69.6
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 3.8e-14 82.8 56 69.6
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 4.2e-13 79.3 114 39.5
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 2.8e-12 76.6 63 55.6
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 3.6e-12 76.3 106 38.7
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 8.0e-12 75.1 120 41.7
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 1.2e-10 71.2 130 36.9
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 5.7e-10 68.9 221 28.5
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 7.5e-10 68.6 214 26.2
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 2.8e-09 66.6 89 41.6
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 3.7e-09 66.2 69 40.6
Mapoly0028s0128 Marchantia polymorpha HOM05D005427 ORTHO05D006461 5.4e-08 62.4 222 25.7
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 2.7e-07 60.1 110 35.5
CBR_g36746 Chara braunii HOM05D005427 ORTHO05D006461 8.6e-06 55.1 276 23.6


User provided reference genes

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