Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 6.4e-255 883.6 466 100.0
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 4.5e-232 807.7 453 92.9
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 2.0e-211 739.2 425 91.3
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.5e-206 723.0 466 81.3
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.3e-202 709.9 455 82.0
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 1.1e-201 706.8 466 79.8
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 1.6e-197 693.0 462 78.6
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 1.9e-190 669.5 395 88.6
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 3.5e-176 622.1 462 73.2
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 6.4e-170 601.3 473 67.2
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 2.7e-168 595.9 457 67.4
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 3.9e-167 592.0 376 81.6
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 8.6e-167 590.9 466 68.0
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 2.9e-162 575.9 460 64.8
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 4.9e-162 575.1 461 65.5
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 7.1e-161 571.2 481 64.0
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 6.0e-160 568.2 465 63.7
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 7.8e-160 567.8 473 64.5
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 5.1e-159 565.1 465 61.9
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 6.6e-159 564.7 463 63.5
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 5.3e-156 555.1 466 62.7
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 6.9e-156 554.7 461 64.4
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 9.0e-156 554.3 474 64.1
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 1.3e-154 550.4 463 62.6
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.9e-153 546.6 452 63.9
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 5.4e-153 545.0 469 62.9
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.4e-153 545.0 459 60.6
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 1.0e-151 540.8 459 60.1
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.3e-151 540.4 457 60.4
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 5.1e-151 538.5 461 59.9
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 6.6e-151 538.1 470 62.6
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 2.5e-150 536.2 463 59.4
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 3.3e-150 535.8 469 62.5
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 3.3e-150 535.8 467 61.0
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 3.3e-150 535.8 464 62.1
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 5.6e-150 535.0 469 62.0
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 2.8e-149 532.7 468 60.0
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 1.8e-148 530.0 468 59.8
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 3.1e-148 529.3 464 60.8
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 5.3e-148 528.5 464 62.3
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 5.3e-148 528.5 464 60.6
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 6.9e-148 528.1 462 61.7
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 7.6e-147 524.6 467 60.2
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 9.9e-147 524.2 462 59.7
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.7e-146 523.5 465 60.2
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 4.9e-146 521.9 435 64.6
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.4e-145 520.4 462 58.2
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.9e-145 520.0 475 57.7
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 9.3e-145 517.7 463 59.6
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 6.0e-144 515.0 462 59.3
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 6.0e-144 515.0 462 59.3
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 1.8e-143 513.5 462 59.1
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 5.1e-143 511.9 463 58.5
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.1e-142 510.8 408 65.0
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 1.9e-142 510.0 466 57.3
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 2.5e-142 509.6 464 59.7
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 2.5e-142 509.6 462 58.7
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 4.3e-142 508.8 464 58.6
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 7.4e-142 508.1 466 61.2
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 7.4e-142 508.1 462 58.7
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 9.6e-142 507.7 364 73.9
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 1.3e-141 507.3 463 58.3
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 1.1e-140 504.2 683 45.1
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 1.3e-138 497.3 463 58.1
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 1.2e-136 490.7 460 56.7
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 1.6e-136 490.3 460 56.7
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 5.1e-135 485.3 459 57.5
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.7e-135 484.6 460 56.3
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 3.3e-134 482.6 290 85.2
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 5.7e-134 481.9 461 58.4
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 3.1e-132 476.1 432 58.8
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 4.1e-132 475.7 374 65.8
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 9.0e-132 474.6 469 56.3
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.0e-130 468.8 559 48.1
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 9.3e-129 464.5 400 61.5
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.3e-127 460.7 498 53.8
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 1.9e-126 456.8 463 55.1
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.3e-126 455.7 461 54.9
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 1.3e-122 444.1 432 56.7
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 1.7e-122 443.7 530 48.7
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 2.7e-120 436.4 460 54.6
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 3.0e-119 433.0 393 58.0
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.3e-118 429.5 424 55.4
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 3.7e-117 426.0 441 54.0
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 1.0e-114 417.9 414 56.5
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 2.9e-114 416.4 322 65.5
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 2.9e-114 416.4 364 60.2
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 3.2e-113 412.9 469 51.6
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 3.6e-112 409.5 417 55.4
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 3.9e-111 406.0 385 58.7
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 5.0e-106 389.0 506 49.8
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 2.5e-105 386.7 482 48.1
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 5.2e-103 379.0 350 58.9
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 5.7e-102 375.6 373 56.0
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 4.8e-101 372.5 491 45.0
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 1.4e-100 370.9 421 51.3
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 2.4e-100 370.2 465 47.1
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 2.4e-100 370.2 285 66.3
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 1.6e-99 367.5 228 80.3
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 5.9e-99 365.5 291 63.6
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 5.2e-95 352.4 480 46.0
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 8.5e-90 335.1 346 52.3
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 4.2e-89 332.8 254 65.4
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 8.8e-87 325.1 264 63.3
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.4e-86 323.2 310 56.1
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 7.5e-86 322.0 296 60.1
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 4.1e-84 316.2 376 49.2
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 8.0e-80 302.0 341 51.0
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 7.8e-75 285.4 311 53.4
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 5.0e-74 282.7 514 37.4
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 3.6e-72 276.6 445 39.6
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.0e-71 275.0 247 59.1
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.1e-65 255.0 167 73.7
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.4e-62 243.0 297 48.1
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 1.5e-57 228.0 296 44.3
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 1.5e-49 201.4 147 74.8
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 7.3e-49 199.1 442 34.6
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.8e-47 194.5 210 53.8
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 8.4e-45 185.7 159 60.4
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 1.2e-43 181.8 167 59.3
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 5.1e-42 176.4 126 75.4
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.1e-39 168.7 565 31.2
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 9.0e-39 165.6 106 72.6
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 4.9e-37 159.8 429 32.9
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.8e-31 141.4 149 51.0
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 1.2e-30 138.7 127 63.0
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 8.4e-29 132.5 374 31.6
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-28 132.1 166 47.0
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 1.2e-22 112.1 81 74.1
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 2.1e-19 101.3 84 61.9
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 6.0e-19 99.8 64 78.1
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 6.0e-19 99.8 144 43.8
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 6.7e-18 96.3 124 50.8
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 5.7e-17 93.2 125 40.8
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.4e-17 92.8 75 61.3
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.4e-17 92.8 75 61.3
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.6e-16 91.7 75 60.0
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.4e-15 88.6 75 60.0
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 8.5e-13 79.3 118 43.2
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 2.5e-12 77.8 46 84.8
Psat0ss26165g0120 Pisum sativum HOM05D004949 ORTHO05D006006 3.6e-11 73.9 63 66.7
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 1.1e-09 68.9 83 48.2
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 6.3e-08 63.2 79 46.8
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.4e-07 61.2 47 57.4


User provided reference genes

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