Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 3.6e-106 388.3 196 100.0
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 2.2e-87 325.9 196 82.1
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.1e-54 217.2 199 60.3
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 1.6e-53 213.4 199 61.3
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 1.2e-50 203.8 199 59.8
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 4.4e-48 195.3 213 54.9
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 1.3e-47 193.7 200 57.0
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 2.2e-47 193.0 197 56.9
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 4.2e-46 188.7 200 55.5
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 2.7e-45 186.0 196 55.1
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 3.5e-45 185.7 200 53.5
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 1.5e-43 180.3 212 50.0
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.3e-43 178.7 201 53.7
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 7.3e-43 177.9 205 52.2
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 9.6e-43 177.6 203 53.2
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 9.6e-43 177.6 203 53.2
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 1.3e-42 177.2 202 52.0
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 4.8e-42 175.3 201 53.2
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 4.8e-42 175.3 205 50.7
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 6.2e-42 174.9 202 52.5
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 2.4e-41 172.9 198 52.5
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 2.4e-41 172.9 201 52.7
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 5.3e-41 171.8 199 50.8
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 9.0e-41 171.0 209 53.1
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 1.2e-40 170.6 199 51.8
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 4.5e-40 168.7 200 50.0
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 9.9e-40 167.5 199 48.7
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 1.3e-39 167.2 199 49.7
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 1.7e-39 166.8 202 51.0
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 2.2e-39 166.4 205 48.8
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 2.2e-39 166.4 199 49.2
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.9e-39 165.2 205 49.8
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 8.4e-39 164.5 200 50.0
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.1e-38 164.1 202 50.0
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 2.4e-38 162.9 202 48.5
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.4e-38 162.9 202 49.5
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 7.1e-38 161.4 202 48.5
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.6e-37 160.2 204 47.5
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.6e-37 160.2 205 48.8
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 2.1e-37 159.8 205 48.8
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 2.7e-37 159.5 202 46.5
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 1.8e-36 156.8 199 46.2
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 2.3e-36 156.4 199 46.7
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 3.0e-36 156.0 201 48.3
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 3.0e-36 156.0 204 48.5
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 3.9e-36 155.6 205 46.8
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 3.9e-36 155.6 204 50.0
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 3.9e-36 155.6 204 48.5
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 5.1e-36 155.2 203 47.3
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 5.1e-36 155.2 208 48.1
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 5.1e-36 155.2 208 48.1
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 6.7e-36 154.8 199 50.3
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 8.7e-36 154.5 206 46.6
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 8.7e-36 154.5 201 47.3
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 8.7e-36 154.5 216 46.3
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.1e-35 154.1 202 47.0
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 1.5e-35 153.7 203 46.8
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 3.3e-35 152.5 202 47.0
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 3.3e-35 152.5 202 47.0
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.3e-35 152.5 208 47.1
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 3.3e-35 152.5 203 46.8
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.3e-35 152.1 187 48.7
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 4.3e-35 152.1 206 45.1
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 9.6e-35 151.0 204 44.1
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.3e-34 150.6 208 46.2
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 2.1e-34 149.8 199 47.2
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 2.1e-34 149.8 199 47.2
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.8e-34 149.4 200 46.0
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 2.8e-34 149.4 200 46.0
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.7e-34 149.1 208 45.7
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.7e-34 149.1 204 43.6
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 3.7e-34 149.1 200 43.0
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 6.2e-34 148.3 204 45.1
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 6.2e-34 148.3 215 46.5
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 6.2e-34 148.3 199 44.2
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 8.1e-34 147.9 206 45.1
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 1.1e-33 147.5 201 45.8
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 1.1e-33 147.5 201 45.8
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 1.1e-33 147.5 201 45.8
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.1e-33 147.5 202 46.5
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.4e-33 147.1 199 46.2
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.8e-33 146.7 200 47.5
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 1.8e-33 146.7 219 43.8
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.8e-33 146.7 207 46.4
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 2.4e-33 146.4 205 44.9
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 9.0e-33 144.4 203 48.3
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.5e-32 143.7 205 43.9
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.4e-32 142.5 201 46.3
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.4e-32 142.5 201 46.3
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 4.5e-32 142.1 196 44.4
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 5.8e-32 141.7 208 42.8
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 9.9e-32 141.0 199 43.2
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.7e-31 140.2 200 45.5
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.9e-31 139.4 204 42.2
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 2.9e-31 139.4 195 42.6
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 2.9e-31 139.4 207 41.1
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 4.9e-31 138.7 206 42.2
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 4.9e-31 138.7 206 42.2
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 6.4e-31 138.3 197 42.1
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 6.4e-31 138.3 197 41.6
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 6.4e-31 138.3 211 44.1
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 8.4e-31 137.9 201 43.3
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 1.1e-30 137.5 208 42.3
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.4e-30 137.1 192 45.8
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 1.9e-30 136.7 207 40.6
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 5.5e-30 135.2 205 41.5
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 7.1e-30 134.8 203 43.8
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 9.3e-30 134.4 199 40.2
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.2e-29 134.0 201 42.3
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 1.6e-29 133.7 206 41.3
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 2.1e-29 133.3 201 41.8
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 2.7e-29 132.9 200 42.5
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 2.7e-29 132.9 201 41.3
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 6.0e-29 131.7 203 42.9
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 7.9e-29 131.3 205 43.4
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 7.9e-29 131.3 205 40.0
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.3e-28 130.6 273 36.6
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 2.3e-28 129.8 197 43.1
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 2.3e-28 129.8 197 43.1
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 2.3e-28 129.8 197 43.1
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.3e-28 129.8 206 41.7
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 1.1e-27 127.5 201 41.3
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 3.3e-27 125.9 199 42.2
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 3.3e-27 125.9 199 42.2
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 4.3e-27 125.6 150 51.3
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 5.6e-27 125.2 228 39.5
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 9.6e-27 124.4 208 41.8
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.3e-26 124.0 117 61.5
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.6e-26 123.6 203 38.9
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 1.1e-25 120.9 205 42.0
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.8e-25 120.2 206 41.7
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 5.3e-25 118.6 266 34.2
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 5.3e-25 118.6 196 39.8
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 2.0e-24 116.7 204 43.1
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 2.6e-24 116.3 149 47.7
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 3.4e-24 115.9 182 41.2
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.3e-23 114.0 112 58.0
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 2.9e-23 112.8 204 42.2
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 6.5e-23 111.7 98 63.3
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.4e-22 110.5 90 63.3
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 3.2e-22 109.4 132 50.0
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 7.1e-22 108.2 330 30.3
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 2.1e-21 106.7 134 50.7
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.0e-20 104.4 158 45.6
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 1.3e-20 104.0 90 57.8
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 3.0e-20 102.8 176 38.6
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 5.1e-20 102.1 88 59.1
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 2.5e-19 99.8 89 58.4
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 2.2e-18 96.7 207 35.7
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.2e-18 96.7 182 39.6
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 1.8e-17 93.6 152 40.1
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 9.0e-17 91.3 156 38.5
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 1.9e-14 83.6 165 36.4
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 1.2e-13 80.9 161 34.2
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.8e-12 77.0 165 40.0
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 2.3e-12 76.6 91 44.0
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 6.7e-12 75.1 181 34.3
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 1.1e-09 67.8 140 35.7
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.1e-09 66.2 126 38.9
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.7e-07 60.5 72 48.6
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 2.2e-07 60.1 85 42.4
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 2.2e-07 60.1 44 72.7
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 2.2e-07 60.1 52 61.5
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 8.5e-07 58.2 124 37.9
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 2.5e-06 56.6 71 43.7
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 3.2e-06 56.2 59 52.5
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 5.5e-06 55.5 44 68.2
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 5.5e-06 55.5 44 68.2


User provided reference genes

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