Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 3.6e-112 409.5 249 100.0
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 1.3e-56 224.9 159 71.1
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 3.1e-55 220.3 250 64.8
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 3.4e-54 216.9 122 87.7
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 2.6e-49 200.7 130 77.7
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 3.1e-39 167.2 221 60.2
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 4.7e-35 153.3 225 57.3
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 8.0e-35 152.5 160 46.9
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 1.4e-34 151.8 138 50.0
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 3.4e-33 147.1 129 49.6
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 3.7e-32 143.7 227 46.7
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 3.7e-32 143.7 227 46.7
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 1.8e-31 141.4 227 46.7
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 1.8e-31 141.4 227 46.7
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 1.8e-31 141.4 142 45.8
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 2.4e-31 141.0 158 44.3
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 5.4e-31 139.8 159 42.1
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 9.1e-31 139.0 143 46.2
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 9.1e-31 139.0 157 42.7
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 8.6e-29 132.5 230 45.2
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 1.9e-28 131.3 119 50.4
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 1.0e-26 125.6 155 42.6
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 1.4e-26 125.2 138 46.4
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 3.0e-26 124.0 143 46.2
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 3.0e-26 124.0 135 47.4
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 3.0e-26 124.0 94 69.1
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 6.8e-26 122.9 127 42.5
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 1.2e-25 122.1 107 51.4
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 1.5e-25 121.7 136 47.1
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 5.7e-25 119.8 154 39.6
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 6.3e-24 116.3 132 46.2
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.1e-23 115.5 122 48.4
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 4.1e-23 113.6 99 57.6
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 5.4e-23 113.2 123 48.0
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 7.0e-23 112.8 145 42.1
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 9.2e-23 112.5 124 48.4
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 1.6e-22 111.7 157 36.9
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 2.0e-22 111.3 128 43.8
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 4.5e-22 110.2 132 40.2
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 1.0e-21 109.0 120 45.8
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 1.3e-21 108.6 143 40.6
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 2.3e-21 107.8 140 42.1
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 8.6e-21 105.9 82 54.9
Oeu036988.1 Olea europaea HOM05D002444 ORTHO05D009235 1.1e-20 105.5 244 31.1
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 1.5e-20 105.1 71 69.0
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 7.3e-20 102.8 106 41.5
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 9.5e-20 102.4 140 37.1
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 1.2e-19 102.1 115 47.8
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 2.1e-19 101.3 179 54.7
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 4.7e-19 100.1 104 49.0
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 6.1e-19 99.8 120 42.5
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 1.0e-18 99.0 74 70.3
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 1.5e-17 95.1 121 42.1
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 1.5e-17 95.1 121 42.1
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 2.0e-17 94.7 227 45.4
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 3.2e-15 87.4 91 41.8
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 5.4e-15 86.7 91 40.7
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 3.5e-14 84.0 109 37.6
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.7e-13 81.6 75 56.0
arahy.Tifrunner.gnm1.ann1.ANG7EI Arachis hypogaea HOM05D002444 ORTHO05D009235 2.3e-13 81.3 64 56.2
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 2.3e-13 81.3 63 55.6
Eucgr.H04031 Eucalyptus grandis HOM05D002444 ORTHO05D009235 1.1e-12 79.0 160 57.5
Gorai.013G105500 Gossypium raimondii HOM05D002444 ORTHO05D009235 2.5e-12 77.8 111 61.3
ClCG05G006410 Citrullus lanatus HOM05D002444 ORTHO05D009235 7.3e-12 76.3 85 43.5
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 1.2e-11 75.5 82 47.6
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 2.8e-11 74.3 116 34.5
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 8.0e-11 72.8 74 43.2
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 1.1e-10 72.4 68 45.6
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 1.4e-10 72.0 80 41.2
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 2.3e-10 71.2 64 46.9
TAR365G0952 Trochodendron aralioides HOM05D002444 ORTHO05D009235 3.1e-10 70.9 41 73.2
ATR0697G276 Amborella trichopoda HOM05D002444 ORTHO05D009235 5.2e-10 70.1 43 62.8
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 5.2e-10 70.1 43 67.4
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 5.2e-10 70.1 68 42.6
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 1.5e-09 68.6 56 51.8
Haze_23220 Corylus avellana HOM05D007455 ORTHO05D009431 4.9e-08 63.5 118 27.1
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 6.4e-08 63.2 40 62.5
MELO3C015131.2 Cucumis melo HOM05D007455 ORTHO05D009431 7.0e-07 59.7 87 28.7
CsaV3_1G043280 Cucumis sativus L. HOM05D007455 ORTHO05D009431 9.2e-07 59.3 87 27.6
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 9.2e-07 59.3 89 32.6
Cfa009846 Carpinus fangiana HOM05D007455 ORTHO05D009431 1.2e-06 58.9 112 26.8
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 1.2e-06 58.9 41 58.5
Eucgr.C02447 Eucalyptus grandis HOM05D007455 ORTHO05D009431 2.1e-06 58.2 87 29.9
MD07G1079700 Malus domestica HOM05D007455 ORTHO05D009431 2.1e-06 58.2 89 29.2
CDE07G0962 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 3.5e-06 57.4 106 26.4
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 6.0e-06 56.6 30 80.0
ClCG03G012670 Citrullus lanatus HOM05D007455 ORTHO05D009431 6.0e-06 56.6 89 29.2
Sed0025332 Sechium edule HOM05D007455 ORTHO05D009431 6.0e-06 56.6 134 26.1


User provided reference genes

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