Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 1.3e-224 782.7 379 100.0
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 2.4e-183 645.6 367 86.1
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 2.3e-178 629.0 339 90.0
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 2.6e-177 625.5 370 81.6
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 4.1e-175 618.2 373 81.0
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 2.9e-173 612.1 317 90.5
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 1.1e-172 610.1 317 89.6
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 1.5e-172 609.8 354 83.1
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 2.5e-172 609.0 359 82.5
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 2.3e-170 602.4 315 89.2
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 5.2e-170 601.3 317 89.0
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 2.2e-160 569.3 317 83.9
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 5.6e-156 554.7 316 81.0
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 1.8e-154 549.7 316 80.7
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 1.5e-153 546.6 318 79.9
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 2.0e-153 546.2 317 80.4
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 4.4e-153 545.0 319 79.3
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 5.8e-153 544.7 316 79.7
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 2.9e-152 542.3 324 79.3
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 3.7e-152 542.0 319 78.4
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 1.9e-151 539.7 317 79.5
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 2.1e-150 536.2 319 78.7
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 3.5e-150 535.4 318 78.6
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 3.0e-149 532.3 316 76.6
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 3.9e-149 531.9 303 81.2
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 3.9e-149 531.9 327 75.8
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 5.1e-149 531.6 371 69.3
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 1.1e-148 530.4 316 77.2
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.5e-148 530.0 320 77.2
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 4.3e-148 528.5 322 77.6
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 5.6e-148 528.1 323 76.5
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 2.8e-147 525.8 319 76.8
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.2e-147 524.6 320 76.9
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 1.1e-146 523.9 319 77.1
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 2.4e-146 522.7 318 75.8
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 1.3e-144 516.9 319 75.2
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 6.4e-144 514.6 316 74.7
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 1.1e-143 513.8 315 74.9
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.4e-143 513.5 316 75.9
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 4.1e-143 511.9 331 71.6
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 1.2e-142 510.4 319 74.3
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 2.1e-142 509.6 319 74.9
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 2.1e-142 509.6 319 74.9
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 2.7e-142 509.2 321 73.5
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 2.7e-142 509.2 319 74.9
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.7e-142 509.2 316 76.3
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 2.7e-142 509.2 315 75.2
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 3.5e-142 508.8 317 74.8
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 4.6e-142 508.4 315 75.6
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 4.6e-142 508.4 316 73.7
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 6.0e-142 508.1 315 75.6
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 7.8e-142 507.7 316 73.1
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 2.3e-141 506.1 320 73.8
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 2.3e-141 506.1 317 74.1
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 2.3e-141 506.1 348 69.3
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 5.1e-141 505.0 321 71.7
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 6.6e-141 504.6 320 74.4
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 1.5e-140 503.4 316 73.4
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 2.5e-140 502.7 330 70.6
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 3.3e-140 502.3 344 68.0
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 4.3e-140 501.9 318 73.9
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 5.6e-140 501.5 316 72.2
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 2.8e-139 499.2 321 72.9
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.8e-139 499.2 337 68.5
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 3.6e-139 498.8 320 71.6
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.1e-138 497.3 316 72.2
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.4e-138 496.9 316 72.2
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 1.8e-138 496.5 317 71.9
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.4e-138 496.1 313 72.8
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 3.1e-138 495.7 320 70.9
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 3.1e-138 495.7 320 72.2
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 4.0e-138 495.4 317 73.2
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 5.2e-138 495.0 317 74.1
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 5.2e-138 495.0 316 74.1
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 5.2e-138 495.0 318 72.0
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 5.2e-138 495.0 315 73.0
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 6.9e-138 494.6 315 72.4
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 6.9e-138 494.6 316 72.5
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 9.0e-138 494.2 320 70.6
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 9.0e-138 494.2 318 73.3
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 1.2e-137 493.8 318 70.4
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 2.0e-137 493.0 315 72.1
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 2.0e-137 493.0 316 71.8
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.4e-137 492.3 332 70.8
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 3.4e-137 492.3 315 71.7
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 4.4e-137 491.9 368 63.9
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 5.8e-137 491.5 319 70.5
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 1.7e-136 490.0 315 71.4
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 2.2e-136 489.6 320 70.0
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 6.4e-136 488.0 318 71.1
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 1.9e-135 486.5 323 69.0
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 2.4e-135 486.1 316 70.3
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 2.1e-134 483.0 317 71.0
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 3.5e-134 482.3 316 69.9
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 4.6e-134 481.9 316 71.8
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 1.0e-133 480.7 316 71.5
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 5.1e-133 478.4 323 69.3
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 6.6e-133 478.0 317 69.4
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 8.7e-133 477.6 316 72.2
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 9.6e-132 474.2 317 69.1
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 2.1e-131 473.0 307 71.3
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 6.2e-131 471.5 335 66.9
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 1.8e-130 469.9 319 68.7
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.8e-130 469.9 319 68.3
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 2.4e-130 469.5 390 60.0
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 3.1e-130 469.2 317 68.1
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 2.6e-129 466.1 318 67.3
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 4.5e-129 465.3 317 69.7
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.2e-128 463.0 422 56.6
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 3.8e-128 462.2 320 66.2
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 8.4e-128 461.1 328 64.6
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 5.4e-127 458.4 317 68.1
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.2e-126 457.2 315 68.6
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 2.7e-126 456.1 318 65.7
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.9e-124 449.9 315 66.7
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.9e-124 449.9 293 69.3
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.3e-123 447.2 315 65.7
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 6.2e-123 444.9 319 67.4
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 7.6e-121 438.0 336 61.3
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.1e-119 434.1 295 68.8
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 8.7e-117 424.5 317 64.0
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 2.5e-116 422.9 329 60.2
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 6.2e-115 418.3 287 68.6
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 8.2e-115 417.9 316 63.3
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 4.5e-113 412.1 290 67.9
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.9e-111 406.8 284 66.2
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 3.9e-109 399.1 324 62.7
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 2.5e-108 396.4 337 57.6
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 3.3e-108 396.0 334 57.5
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 3.4e-105 386.0 303 63.0
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 4.2e-103 379.0 317 58.7
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 4.2e-103 379.0 322 56.2
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.6e-102 377.1 317 55.8
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 2.7e-102 376.3 324 56.2
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 8.2e-99 364.8 317 55.5
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 9.1e-98 361.3 229 72.5
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 2.6e-97 359.8 193 89.1
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 5.9e-97 358.6 292 59.6
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 7.2e-95 351.7 244 67.6
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 3.0e-85 319.7 200 75.5
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 7.4e-84 315.1 354 44.9
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 6.7e-77 292.0 151 90.7
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 3.3e-76 289.7 218 61.9
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 5.3e-74 282.3 181 74.6
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 6.1e-70 268.9 233 60.5
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 7.5e-68 261.9 165 73.9
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.6e-62 244.2 306 48.7
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 4.5e-57 226.1 145 73.1
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 2.3e-53 213.8 140 69.3
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.6e-46 191.0 147 59.9
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 4.1e-42 176.4 317 37.2
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 1.0e-40 171.8 100 76.0
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 5.1e-40 169.5 125 64.0
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.1e-38 164.1 124 62.1
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.4e-34 151.4 109 63.3
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 1.3e-32 144.8 93 72.0
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 2.3e-32 144.1 69 91.3
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 5.1e-32 142.9 109 66.1
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 1.7e-27 127.9 75 72.0
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 4.6e-25 119.8 86 66.3
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 3.9e-24 116.7 67 74.6
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 1.6e-22 111.3 73 69.9
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 2.1e-22 110.9 165 38.2
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 7.6e-20 102.4 58 72.4
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 2.9e-19 100.5 72 66.7
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 3.4e-12 77.0 43 79.1
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 3.8e-11 73.6 54 64.8
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 7.9e-09 65.9 80 47.5
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 3.9e-08 63.5 46 67.4
Medtr8g066150 Medicago truncatula HOM05D004085 ORTHO05D263454 3.9e-08 63.5 84 42.9
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 1.9e-07 61.2 56 57.1


User provided reference genes

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