Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 0.0e+00 1128.2 559 100.0
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 1.9e-253 879.0 518 84.0
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 7.5e-250 867.1 508 86.2
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 1.2e-231 806.6 567 72.8
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 1.5e-226 789.6 548 72.6
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 7.1e-224 780.8 534 74.0
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 1.3e-222 776.5 558 72.2
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 2.5e-221 772.3 548 71.9
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 3.3e-221 771.9 571 70.8
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 3.4e-186 655.6 544 61.2
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 7.6e-186 654.4 560 61.1
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 1.9e-184 649.8 552 61.8
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 2.5e-184 649.4 539 62.5
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 1.1e-181 640.6 546 60.3
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 1.5e-181 640.2 487 65.7
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 1.5e-181 640.2 564 60.6
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 2.2e-180 636.3 517 61.3
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 3.1e-179 632.5 494 62.8
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 1.2e-178 630.6 504 62.7
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 1.5e-178 630.2 526 60.1
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 1.5e-178 630.2 460 65.7
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 2.2e-177 626.3 526 59.9
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 2.2e-177 626.3 492 63.0
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 9.4e-176 620.9 519 59.9
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 1.4e-174 617.1 548 56.6
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 3.9e-174 615.5 456 66.4
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 1.5e-173 613.6 466 62.9
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 2.5e-173 612.8 527 59.2
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 2.8e-172 609.4 558 57.7
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 1.1e-171 607.4 530 58.7
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 3.4e-170 602.4 531 57.1
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 2.9e-169 599.4 422 66.8
Glyma.16G106500 Glycine max HOM05D006592 ORTHO05D008122 3.8e-169 599.0 303 92.7
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 1.1e-168 597.4 481 62.0
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 1.6e-167 593.6 535 57.6
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 2.7e-167 592.8 409 68.9
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 4.7e-167 592.0 512 59.8
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 1.5e-165 587.0 566 54.1
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 9.7e-165 584.3 401 68.3
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 9.7e-165 584.3 445 61.8
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 3.7e-164 582.4 500 57.4
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 4.8e-164 582.0 476 58.2
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 8.2e-164 581.3 401 67.8
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 1.2e-162 577.4 565 53.3
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 3.5e-162 575.9 469 61.4
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 2.9e-161 572.8 486 58.4
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 1.1e-160 570.9 464 59.7
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 2.5e-160 569.7 471 58.8
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 4.7e-159 565.5 549 53.6
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 4.7e-159 565.5 409 62.1
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 6.1e-159 565.1 490 56.7
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 1.1e-157 560.8 536 55.0
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 1.1e-157 560.8 466 58.6
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 2.8e-156 556.2 540 53.5
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 1.8e-155 553.5 532 53.9
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 2.4e-155 553.1 473 57.5
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 9.1e-155 551.2 469 58.4
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 2.0e-154 550.1 366 70.2
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 3.8e-153 545.8 479 56.6
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 5.0e-153 545.4 402 61.9
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 5.0e-153 545.4 524 53.4
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 5.0e-153 545.4 488 53.5
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 5.0e-153 545.4 483 56.7
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 1.9e-152 543.5 488 53.3
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 7.2e-152 541.6 466 58.2
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 9.4e-152 541.2 423 61.7
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 2.1e-151 540.0 499 55.5
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 2.7e-151 539.7 477 56.8
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 2.7e-151 539.7 421 59.9
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 3.6e-151 539.3 526 52.9
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 4.7e-151 538.9 478 57.7
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 1.0e-150 537.7 484 56.4
Psat4g109400 Pisum sativum HOM05D006592 ORTHO05D008122 4.4e-149 532.3 314 80.6
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 7.5e-149 531.6 592 49.5
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 2.8e-148 529.6 461 57.9
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 4.8e-148 528.9 459 54.0
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 1.4e-147 527.3 459 57.1
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 2.7e-146 523.1 491 52.3
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 1.0e-145 521.2 471 55.8
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 1.7e-145 520.4 484 55.2
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 1.9e-144 516.9 478 55.0
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 2.5e-144 516.5 525 52.6
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 1.8e-139 500.4 363 61.4
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 2.8e-132 476.5 485 49.9
Hma1.2p1_1046F.1_g251540 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 7.5e-125 451.8 290 73.4
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 3.4e-117 426.4 461 45.1
Lj4g0008520 Lotus japonicus HOM05D006592 ORTHO05D008122 8.3e-116 421.8 240 83.8
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 9.2e-115 418.3 387 48.8
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 2.1e-114 417.2 386 50.5
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 4.6e-114 416.0 284 68.7
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 5.1e-113 412.5 432 47.0
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 5.4e-107 392.5 570 43.7
Sc01g0005980 Simmondsia chinensis HOM05D006592 ORTHO05D008122 2.7e-106 390.2 283 64.7
CARHR030900 Cardamine hirsuta HOM05D006592 ORTHO05D008122 1.2e-103 381.3 287 64.1
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 2.4e-99 367.1 570 40.9
Glyma.16G106700 Glycine max HOM05D006592 ORTHO05D008122 6.2e-95 352.4 261 76.6
CSS0028407 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 3.1e-94 350.1 258 67.1
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 9.9e-93 345.1 367 46.3
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 1.3e-92 344.7 373 45.3
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 4.2e-91 339.7 478 40.6
HPP92_015141 Vanilla planifolia HOM05D006592 ORTHO05D008122 4.6e-90 336.3 230 65.7
Lj8A380T21 Lonicera japonica HOM05D006592 ORTHO05D008122 1.5e-88 331.3 217 71.9
CSS0043715 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 5.8e-85 319.3 243 65.8
Lj4g0015969 Lotus japonicus HOM05D006592 ORTHO05D008122 2.0e-77 294.3 266 63.5
CANSAT11G2102 Cannabis sativa HOM05D006592 ORTHO05D008122 2.9e-68 263.8 302 47.0
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 2.9e-68 263.8 527 34.7
Psat4g134920 Pisum sativum HOM05D006592 ORTHO05D008122 1.1e-67 261.9 273 58.2
CSS0050204 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 3.8e-60 236.9 165 65.5
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 3.6e-58 230.3 326 37.1
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 8.2e-47 192.6 284 34.2
Cpa.g.sc137.28 Carica papaya HOM05D006592 ORTHO05D008122 5.5e-43 179.9 218 46.8
MCO09G637 Micromonas commoda HOM05D006592 ORTHO05D008122 1.4e-38 165.2 369 29.8
Cpa.g.sc137.29 Carica papaya HOM05D006592 ORTHO05D008122 1.8e-38 164.9 103 76.7
Sc01g0005990 Simmondsia chinensis HOM05D006592 ORTHO05D008122 5.0e-36 156.8 232 40.9
PRCOL_00001501 Prasinoderma coloniale HOM05D006592 ORTHO05D008122 1.9e-35 154.8 393 29.8
MBI14_g31659_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 1.5e-32 145.2 107 66.4
SEGI_06764 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 1.5e-27 128.6 133 48.1
Zm00001eb071790 Zea mays HOM05D006592 ORTHO05D008122 1.6e-26 125.2 221 39.8
MBI02_g32478_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 2.1e-26 124.8 91 65.9
Ciclev10004057m.g Citrus clementina HOM05D006592 ORTHO05D008122 1.9e-19 101.7 95 50.5
Dinv37458 Davidia involucrata HOM05D000040 ORTHO05D000267 7.5e-16 89.7 73 65.8
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 3.7e-15 87.4 63 60.3
C08p16710 Brassica napus HOM05D006592 ORTHO05D008122 1.8e-09 68.6 35 68.6
Hma1.2p1_1046F.1_g251530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-08 65.9 44 63.6
SEGI_04489 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 7.0e-06 56.6 41 56.1


User provided reference genes

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