Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 5.2e-274 947.2 514 100.0
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 2.5e-252 875.2 514 93.0
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 2.0e-241 839.0 514 89.5
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 5.0e-208 728.0 505 80.6
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 1.5e-207 726.5 509 80.0
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 4.7e-206 721.5 520 78.8
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 5.0e-200 701.4 509 75.4
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 6.5e-200 701.0 449 83.5
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 1.9e-199 699.5 469 78.7
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 3.2e-199 698.7 406 90.9
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 5.5e-199 698.0 558 72.6
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 2.6e-196 689.1 439 82.5
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 3.4e-196 688.7 477 77.8
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 4.4e-196 688.3 525 72.4
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 1.7e-195 686.4 442 83.0
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 1.7e-195 686.4 442 81.0
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 2.2e-195 686.0 529 72.8
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 2.2e-195 686.0 446 80.3
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 2.8e-195 685.6 505 75.8
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.1e-194 683.7 434 83.4
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 1.1e-194 683.7 441 82.3
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 1.8e-194 682.9 462 78.1
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 3.1e-194 682.2 446 80.7
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 5.4e-194 681.4 450 80.2
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 1.6e-193 679.9 470 76.8
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 2.0e-193 679.5 434 82.7
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 4.5e-193 678.3 434 82.5
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.0e-192 677.2 434 82.3
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.3e-192 676.8 435 82.5
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 3.8e-192 675.2 432 82.4
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 5.0e-192 674.9 434 82.0
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 6.6e-192 674.5 462 77.3
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 3.3e-191 672.2 497 74.2
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 7.2e-191 671.0 462 76.6
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 9.5e-191 670.6 438 79.9
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 1.6e-190 669.8 446 80.0
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 2.1e-190 669.5 432 81.7
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 8.0e-190 667.5 441 78.5
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 8.0e-190 667.5 469 76.3
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 1.4e-189 666.8 436 79.8
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.8e-189 666.4 438 79.7
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 2.3e-189 666.0 436 79.6
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 2.3e-189 666.0 436 79.6
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 2.3e-189 666.0 439 80.6
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 2.3e-189 666.0 471 76.9
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 3.0e-189 665.6 436 79.6
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 5.2e-189 664.8 444 78.4
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 6.8e-189 664.5 438 79.7
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 6.8e-189 664.5 494 73.1
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 8.9e-189 664.1 512 72.1
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 1.5e-188 663.3 438 79.5
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 1.5e-188 663.3 454 76.7
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.5e-188 663.3 494 73.1
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 1.5e-188 663.3 446 78.7
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 1.5e-188 663.3 518 72.2
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 2.6e-188 662.5 438 79.2
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 3.4e-188 662.1 518 72.0
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 5.7e-188 661.4 459 77.6
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 7.5e-188 661.0 438 78.8
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 7.5e-188 661.0 430 80.2
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 9.8e-188 660.6 459 76.7
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 1.7e-187 659.8 438 79.2
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 1.7e-187 659.8 495 72.5
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 2.2e-187 659.4 452 78.3
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 3.7e-187 658.7 431 80.3
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 3.7e-187 658.7 438 78.8
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 3.7e-187 658.7 448 78.6
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 3.7e-187 658.7 450 76.9
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 1.4e-186 656.8 517 69.8
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.4e-186 656.8 505 72.5
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 1.8e-186 656.4 431 80.0
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 2.4e-186 656.0 518 71.4
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 3.2e-186 655.6 447 76.7
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.2e-185 653.7 434 80.2
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 2.7e-185 652.5 520 70.6
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 7.8e-185 651.0 433 78.5
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 1.3e-184 650.2 434 78.8
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 2.3e-184 649.4 450 77.1
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 1.1e-183 647.1 439 78.6
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 2.5e-183 646.0 432 80.1
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 3.3e-183 645.6 519 69.2
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 1.2e-182 643.7 450 77.1
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 3.6e-182 642.1 439 77.9
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 4.7e-182 641.7 418 81.3
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.4e-181 640.2 434 77.0
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 1.8e-181 639.8 529 69.8
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 2.3e-181 639.4 436 77.8
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 3.1e-181 639.0 459 76.0
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 2.6e-180 636.0 426 77.7
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 7.5e-180 634.4 424 78.3
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 7.5e-180 634.4 424 78.3
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 9.8e-180 634.0 492 71.1
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.7e-179 633.3 438 77.4
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 2.9e-179 632.5 424 78.5
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 3.7e-179 632.1 404 81.9
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 6.4e-179 631.3 521 68.3
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 2.4e-178 629.4 447 75.6
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 1.2e-177 627.1 450 75.3
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 2.0e-177 626.3 411 80.5
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 6.6e-176 621.3 451 72.7
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 1.1e-175 620.5 513 68.4
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 9.5e-175 617.5 408 78.7
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 2.8e-174 615.9 429 74.4
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 6.8e-173 611.3 417 78.7
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 4.4e-172 608.6 449 72.4
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 9.8e-172 607.4 432 73.8
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 3.2e-170 602.4 459 70.2
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 4.1e-170 602.1 439 73.6
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 3.3e-167 592.4 417 77.0
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 1.0e-160 570.9 421 75.1
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 3.0e-160 569.3 451 71.0
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 3.0e-160 569.3 455 68.8
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 3.9e-160 568.9 443 69.8
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 3.0e-152 542.7 441 66.4
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 3.0e-152 542.7 441 66.4
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 2.2e-139 500.0 417 62.6
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 6.0e-137 491.9 437 60.9
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 3.0e-136 489.6 430 59.8
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.4e-130 470.7 380 69.5
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 7.1e-122 441.8 367 64.3
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 1.3e-118 431.0 307 73.0
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 7.7e-116 421.8 342 67.5
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 3.2e-106 389.8 230 89.1
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.4e-96 357.8 421 49.9
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 2.8e-94 350.1 422 51.2
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 1.0e-80 305.1 222 71.2
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.0e-80 305.1 282 62.4
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 2.2e-78 297.4 175 93.7
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 3.5e-76 290.0 439 41.7
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.3e-70 271.6 386 39.1
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 4.1e-69 266.5 156 92.3
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 1.4e-64 251.5 230 61.3
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 2.2e-62 244.2 452 33.4
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 2.3e-56 224.2 239 56.1
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 7.5e-55 219.2 453 37.7
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 6.4e-54 216.1 376 36.2
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 1.4e-53 214.9 156 69.9
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 7.6e-39 166.0 136 60.3
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 1.2e-31 142.1 144 61.1
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 3.4e-31 140.6 132 62.1
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 2.3e-27 127.9 98 76.5
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 8.7e-27 125.9 122 59.0
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 5.3e-24 116.7 81 72.8
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 4.6e-20 103.6 384 24.5
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 8.1e-17 92.8 102 52.9
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 2.7e-12 77.8 422 26.1
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 5.1e-11 73.6 221 28.1
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 6.7e-11 73.2 67 65.7


User provided reference genes

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