Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 4.6e-195 684.5 377 100.0
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 2.5e-180 635.6 377 93.1
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 3.4e-145 518.8 378 78.6
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 4.1e-143 511.9 356 83.1
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 1.6e-142 510.0 384 78.6
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 1.5e-140 503.4 355 82.5
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 5.6e-140 501.5 381 76.9
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 1.7e-136 490.0 382 76.2
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 8.1e-131 471.1 383 72.8
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 4.1e-127 458.8 380 71.8
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 4.1e-127 458.8 380 71.8
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 1.5e-121 440.3 381 69.8
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 3.4e-121 439.1 382 68.1
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.9e-119 433.3 381 67.7
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 1.6e-118 430.3 379 69.7
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 5.1e-117 425.2 380 67.4
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 6.2e-115 418.3 375 66.4
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 9.0e-106 387.9 377 63.9
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 2.2e-104 383.3 381 65.4
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 5.8e-97 358.6 388 58.5
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.0e-96 357.8 372 58.9
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 3.2e-95 352.8 375 56.8
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.0e-93 346.3 373 57.4
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 8.7e-93 344.7 373 57.1
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.1e-92 344.4 373 57.1
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 1.1e-92 344.4 375 57.1
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 3.3e-92 342.8 377 57.8
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 4.1e-90 335.9 376 55.3
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 4.1e-90 335.9 394 53.3
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 6.9e-90 335.1 391 56.5
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.6e-89 333.2 390 54.4
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 3.4e-89 332.8 372 55.6
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.7e-88 330.5 373 55.2
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.7e-88 330.5 373 55.0
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 3.8e-88 329.3 380 55.3
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 2.5e-87 326.6 379 54.9
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 9.3e-87 324.7 384 54.7
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 6.1e-86 322.0 374 53.7
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 1.0e-85 321.2 381 53.8
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 2.3e-85 320.1 389 55.0
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 2.8e-83 313.2 382 54.5
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 6.3e-83 312.0 373 55.8
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 6.3e-83 312.0 373 55.8
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 8.2e-83 311.6 379 54.1
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.9e-80 303.1 376 51.9
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 2.9e-80 303.1 352 53.4
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 1.9e-79 300.4 384 53.9
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.5e-79 300.1 324 59.3
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 1.2e-78 297.7 386 52.3
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.1e-78 297.0 376 50.5
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.1e-78 297.0 376 50.5
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 2.7e-78 296.6 374 52.4
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 1.8e-77 293.9 379 50.7
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 8.8e-77 291.6 372 52.7
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 7.4e-76 288.5 375 49.3
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.4e-76 288.5 384 50.3
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.3e-75 287.7 388 50.0
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.4e-74 283.5 386 49.5
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 4.5e-73 279.3 348 52.3
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 2.9e-72 276.6 372 47.8
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 6.5e-72 275.4 379 48.8
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 3.2e-71 273.1 377 47.7
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 4.7e-70 269.2 377 49.3
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 1.0e-69 268.1 379 51.7
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.3e-69 266.9 375 47.2
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 7.4e-68 261.9 389 44.7
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 1.3e-67 261.2 388 46.6
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 7.0e-66 255.4 379 47.5
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 7.0e-66 255.4 390 45.9
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.0e-65 253.8 372 47.6
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 2.0e-65 253.8 360 45.3
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 8.5e-64 248.4 374 44.9
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 4.2e-63 246.1 378 45.8
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 2.1e-62 243.8 382 47.9
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 4.7e-62 242.7 379 45.9
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 3.0e-61 240.0 381 46.5
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 2.0e-60 237.3 390 43.3
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 4.8e-59 232.6 318 51.6
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 8.2e-59 231.9 317 50.2
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.4e-58 231.1 373 44.2
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.8e-58 230.7 318 51.3
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 4.1e-58 229.6 384 43.0
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 5.3e-58 229.2 273 50.5
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 1.6e-57 227.6 373 45.3
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 4.2e-55 219.5 386 41.5
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 4.2e-55 219.5 391 40.9
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.2e-54 218.0 373 44.5
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.2e-54 218.0 391 40.7
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.0e-53 213.4 379 43.3
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 5.2e-53 212.6 384 40.4
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 3.4e-52 209.9 381 39.9
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 3.4e-52 209.9 381 39.9
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 2.2e-51 207.2 382 41.9
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 4.8e-51 206.1 391 41.2
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 1.1e-50 204.9 375 42.1
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.8e-50 204.1 328 47.9
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 7.7e-49 198.7 376 41.2
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 2.5e-47 193.7 377 41.4
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 5.5e-47 192.6 380 41.8
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 5.5e-47 192.6 380 41.8
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 7.2e-47 192.2 369 40.7
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 1.6e-46 191.0 316 46.5
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 1.0e-45 188.3 385 41.6
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 8.8e-45 185.3 326 44.5
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 5.7e-44 182.6 374 39.8
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 2.2e-43 180.6 374 40.1
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 4.9e-43 179.5 377 39.0
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.4e-42 177.9 378 38.9
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 2.4e-42 177.2 363 40.8
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 2.3e-40 170.6 377 38.7
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.1e-39 168.3 379 38.5
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 1.1e-39 168.3 373 38.1
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 2.5e-39 167.2 373 38.6
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 3.3e-39 166.8 311 42.1
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 5.6e-39 166.0 311 42.4
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.2e-38 164.9 372 38.4
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 1.6e-38 164.5 315 40.6
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 8.0e-38 162.2 349 39.3
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 5.2e-37 159.5 307 42.0
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 8.9e-37 158.7 380 38.9
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 8.9e-37 158.7 349 39.3
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.4e-36 156.8 184 60.9
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 9.8e-36 155.2 381 37.5
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 1.3e-35 154.8 386 35.0
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 6.4e-35 152.5 327 39.8
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 4.1e-34 149.8 311 42.4
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 4.6e-33 146.4 186 52.2
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.7e-32 144.4 365 35.6
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.8e-30 137.1 330 38.8
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 6.2e-30 136.0 329 36.5
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 8.0e-30 135.6 219 48.4
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 6.8e-29 132.5 374 34.8
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 8.9e-29 132.1 324 38.6
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 1.2e-28 131.7 324 38.3
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 1.2e-28 131.7 333 36.6
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 1.5e-28 131.3 333 36.9
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 7.5e-28 129.0 384 34.6
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 8.3e-27 125.6 306 37.3
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 8.3e-27 125.6 361 33.8
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 3.5e-25 120.2 324 36.7
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 4.6e-25 119.8 200 47.0
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 1.7e-24 117.9 299 35.8
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.6e-22 111.3 324 35.5
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.6e-22 111.3 324 35.5
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 1.9e-18 97.8 332 31.9
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 3.2e-18 97.1 155 46.5
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 4.1e-18 96.7 370 30.5
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 4.1e-18 96.7 302 34.8
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 7.1e-18 95.9 302 34.1
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 2.3e-16 90.9 322 32.9
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 3.0e-16 90.5 316 31.0
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 5.1e-16 89.7 383 30.3
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 4.0e-13 80.1 303 32.0
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.2e-12 78.6 374 29.9
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 3.8e-11 73.6 304 31.2
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 1.4e-10 71.6 304 30.9
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 4.1e-10 70.1 133 42.1
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 9.2e-10 68.9 181 33.7
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 2.1e-09 67.8 373 28.7
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 7.8e-09 65.9 301 30.9
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 7.8e-09 65.9 301 30.9
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 3.0e-08 63.9 373 27.9
Os06g0728500 Oryza sativa ssp. japonica HOM05D060560 ORTHO05D005048 1.6e-06 58.2 395 26.8


User provided reference genes

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