Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G269500 Phaseolus vulgaris HOM05D007916 ORTHO05D010074 9.9e-98 360.1 186 100.0
Glyma.09G198900 Glycine max HOM05D007916 ORTHO05D010074 2.4e-88 328.9 185 90.3
VMungo0251G0273 Vigna mungo HOM05D007916 ORTHO05D010074 1.6e-84 316.2 186 88.2
Psat4g104200 Pisum sativum HOM05D007916 ORTHO05D010074 1.3e-73 280.0 185 74.6
Lj2g0002075 Lotus japonicus HOM05D007916 ORTHO05D010074 2.9e-73 278.9 186 75.3
Ca_22424_v3 Cicer arietinum L. HOM05D007916 ORTHO05D010074 1.9e-72 276.2 186 73.1
Medtr8g073850 Medicago truncatula HOM05D007916 ORTHO05D010074 9.3e-72 273.9 189 75.1
Medtr8g073770 Medicago truncatula HOM05D007916 ORTHO05D010074 3.0e-70 268.9 189 74.1
Lalb_Chr09g0321231 Lupinus albus HOM05D007916 ORTHO05D010074 1.6e-68 263.1 179 73.2
TPR.G18290 Trifolium pratense HOM05D007916 ORTHO05D010074 3.7e-68 261.9 155 80.6
QL06p052846 Quercus lobata HOM05D007916 ORTHO05D010074 3.1e-67 258.8 186 72.0
Cfa007071 Carpinus fangiana HOM05D007916 ORTHO05D010074 5.3e-67 258.1 185 69.7
Cfa021284 Carpinus fangiana HOM05D007916 ORTHO05D010074 5.3e-67 258.1 185 69.7
Lj2g0011068 Lotus japonicus HOM05D007916 ORTHO05D010074 4.5e-66 255.0 183 71.6
CiPaw.08G181000 Carya illinoinensis HOM05D007916 ORTHO05D010074 1.1e-64 250.4 186 70.4
Potri.005G100700 Populus trichocarpa HOM05D007916 ORTHO05D010074 5.5e-64 248.1 182 70.9
arahy.Tifrunner.gnm1.ann1.B3G9N7 Arachis hypogaea HOM05D007916 ORTHO05D010074 7.2e-64 247.7 155 76.8
arahy.Tifrunner.gnm1.ann1.IBR8Q2 Arachis hypogaea HOM05D007916 ORTHO05D010074 7.2e-64 247.7 155 76.8
PGR102G1177 Punica granatum HOM05D007916 ORTHO05D010074 1.2e-63 246.9 174 72.4
Prupe.7G181300 Prunus persica HOM05D007916 ORTHO05D010074 2.1e-63 246.1 154 77.3
MD02G1118100 Malus domestica HOM05D007916 ORTHO05D010074 2.7e-63 245.7 154 78.6
Manes.02G113500 Manihot esculenta HOM05D007916 ORTHO05D010074 2.7e-63 245.7 181 69.6
COL.COLO4_22545 Corchorus olitorius HOM05D007916 ORTHO05D010074 3.6e-63 245.4 185 65.4
Manes.01G154600 Manihot esculenta HOM05D007916 ORTHO05D010074 4.6e-63 245.0 181 70.2
Manes.17G004000 Manihot esculenta HOM05D007916 ORTHO05D010074 6.1e-63 244.6 181 69.6
Duzib264G1152 Durio zibethinus HOM05D007916 ORTHO05D010074 2.3e-62 242.7 183 66.7
Nn5g30966 Nelumbo nucifera HOM05D007916 ORTHO05D010074 2.3e-62 242.7 185 66.5
Glyma.11G085200 Glycine max HOM05D007916 ORTHO05D010074 8.8e-62 240.7 193 63.7
FvH4_1g10500 Fragaria vesca HOM05D007916 ORTHO05D010074 3.3e-61 238.8 154 76.0
FAN19G0206 Fragaria x ananassa HOM05D007916 ORTHO05D010074 3.3e-61 238.8 154 76.0
Sabra05G0083300 Salix brachista HOM05D007916 ORTHO05D010074 3.3e-61 238.8 186 68.3
TAR381G0850 Trochodendron aralioides HOM05D007916 ORTHO05D010074 4.3e-61 238.4 151 78.1
FAN28G0654 Fragaria x ananassa HOM05D007916 ORTHO05D010074 5.7e-61 238.0 180 67.8
MBI08_g04809_MAGBIO Magnolia biondii HOM05D007916 ORTHO05D010074 1.3e-60 236.9 184 67.4
RcHm_v2.0_Chr2g0097361 Rosa chinensis HOM05D007916 ORTHO05D010074 2.2e-60 236.1 156 75.0
FAN26G2729 Fragaria x ananassa HOM05D007916 ORTHO05D010074 2.8e-60 235.7 154 75.3
FAN26G3374 Fragaria x ananassa HOM05D007916 ORTHO05D010074 2.8e-60 235.7 154 75.3
MD02G1118400 Malus domestica HOM05D007916 ORTHO05D010074 4.8e-60 235.0 154 74.7
Thecc.01G006300 Theobroma cacao HOM05D007916 ORTHO05D010074 4.8e-60 235.0 185 64.3
Hma1.2p1_0085F.1_g044830 Hydrangea macrophylla HOM05D007916 ORTHO05D010074 1.4e-59 233.4 186 65.6
CANSAT25G0415 Cannabis sativa HOM05D007916 ORTHO05D010074 1.8e-59 233.0 188 66.5
Dinv40180 Davidia involucrata HOM05D000046 ORTHO05D000195 2.6e-58 229.2 149 75.2
HanXRQChr14g0442461 Helianthus annuus HOM05D007916 ORTHO05D010074 1.0e-57 227.3 182 64.8
MELO3C013719.2 Cucumis melo HOM05D007916 ORTHO05D010074 1.7e-57 226.5 178 64.0
Aqoxy6G01679 Aquilegia oxysepala HOM05D007916 ORTHO05D010074 3.8e-57 225.3 186 62.4
Phvul.002G115700 Phaseolus vulgaris HOM05D007916 ORTHO05D010074 5.0e-57 224.9 193 61.1
CSS0010065 Camellia sinensis var. sinensis HOM05D007916 ORTHO05D010074 2.5e-56 222.6 151 68.9
Ah.08g211140 Amaranthus hybridus HOM05D007916 ORTHO05D010074 4.2e-56 221.9 166 66.9
CAN.G1238.3 Capsicum annuum HOM05D007916 ORTHO05D010074 1.2e-55 220.3 149 69.8
ClCG10G000210 Citrullus lanatus HOM05D007916 ORTHO05D010074 1.2e-55 220.3 173 63.6
Sopen02g027500 Solanum pennellii HOM05D007916 ORTHO05D010074 2.7e-55 219.2 175 62.9
PGSC0003DMG403001521 Solanum tuberosum HOM05D007916 ORTHO05D010074 3.6e-55 218.8 149 70.5
ATR0661G436 Amborella trichopoda HOM05D007916 ORTHO05D010074 3.0e-54 215.7 184 59.2
Lsat_1_v5_gn_2_73460 Lactuca sativa HOM05D007916 ORTHO05D010074 8.8e-54 214.2 146 71.9
Solyc02g082740.1 Solanum lycopersicum HOM05D007916 ORTHO05D010074 8.8e-54 214.2 175 61.7
AUR62040166 Chenopodium quinoa HOM05D007916 ORTHO05D010074 3.7e-52 208.8 147 69.4
HanXRQChr14g0442451 Helianthus annuus HOM05D007916 ORTHO05D010074 3.7e-52 208.8 181 57.5
AUR62037915 Chenopodium quinoa HOM05D007916 ORTHO05D010074 2.6e-50 202.6 147 66.7
Zm00001eb145860 Zea mays HOM05D007916 ORTHO05D010074 5.0e-49 198.4 153 61.4
Os01g0879200 Oryza sativa ssp. japonica HOM05D007916 ORTHO05D010074 5.7e-45 184.9 179 51.4
Sabra05G0083200 Salix brachista HOM05D007916 ORTHO05D010074 8.2e-44 181.0 178 53.9
EL10Ac4g07997 Beta vulgaris HOM05D007916 ORTHO05D010074 1.2e-42 177.2 177 52.0
AUR62034214 Chenopodium quinoa HOM05D007916 ORTHO05D010074 2.9e-41 172.6 187 48.7
Potri.005G100600 Populus trichocarpa HOM05D007916 ORTHO05D010074 2.9e-41 172.6 148 58.1
AUR62034212 Chenopodium quinoa HOM05D007916 ORTHO05D010074 8.5e-41 171.0 175 50.9
AUR62029252 Chenopodium quinoa HOM05D007916 ORTHO05D010074 1.1e-40 170.6 152 54.6
Ah.05g178650 Amaranthus hybridus HOM05D007916 ORTHO05D010074 1.8e-38 163.3 148 52.7
EL10Ac1g00145 Beta vulgaris HOM05D007916 ORTHO05D010074 3.0e-38 162.5 150 52.7
AUR62029249 Chenopodium quinoa HOM05D007916 ORTHO05D010074 2.6e-37 159.5 155 51.6
Lj4P234T30 Lonicera japonica HOM05D007916 ORTHO05D010074 4.4e-37 158.7 103 71.8
VMungo1215G2711 Vigna mungo HOM05D007916 ORTHO05D010074 1.2e-31 140.6 189 43.9
Os01g0879300 Oryza sativa ssp. japonica HOM05D007916 ORTHO05D010074 7.5e-29 131.3 163 42.3
AUR62014631 Chenopodium quinoa HOM05D007916 ORTHO05D010074 8.9e-22 107.8 115 47.0
SMO143G0023 Selaginella moellendorffii HOM05D007916 ORTHO05D010074 2.0e-18 96.7 181 28.2
AUR62029251 Chenopodium quinoa HOM05D007916 ORTHO05D010074 1.0e-14 84.3 93 44.1
Zm00001eb051440 Zea mays HOM05D007916 ORTHO05D010074 6.4e-12 75.1 74 45.9
Ah.09g237060 Amaranthus hybridus HOM05D007916 ORTHO05D010074 3.2e-11 72.8 89 42.7
QL08p032297 Quercus lobata HOM05D000180 ORTHO05D000099 7.0e-11 71.6 134 35.1
Prupe.3G215600 Prunus persica HOM05D000180 ORTHO05D000099 1.3e-09 67.4 146 32.2
Phvul.001G145700 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 3.0e-09 66.2 155 29.7
FvH4_6g42490 Fragaria vesca HOM05D000180 ORTHO05D000099 3.3e-08 62.8 153 32.7
Potri.005G100750 Populus trichocarpa HOM05D007916 ORTHO05D010074 3.3e-08 62.8 85 47.1
FAN09G1602 Fragaria x ananassa HOM05D000180 ORTHO05D000099 5.6e-08 62.0 150 34.7
Zm00001eb212920 Zea mays HOM05D007916 ORTHO05D010074 5.6e-08 62.0 66 42.4
SEGI_27732 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 9.5e-08 61.2 177 26.6
TWI79G0050 Tripterygium wilfordii HOM05D000180 ORTHO05D000099 9.5e-08 61.2 127 35.4
FAN02G4293 Fragaria x ananassa HOM05D000180 ORTHO05D000099 1.2e-07 60.8 150 34.0
Cfa014363 Carpinus fangiana HOM05D000180 ORTHO05D000099 1.6e-07 60.5 102 37.3
Prupe.3G215100 Prunus persica HOM05D000180 ORTHO05D000099 1.6e-07 60.5 106 34.9
PGR004G1299 Punica granatum HOM05D000180 ORTHO05D000099 1.6e-07 60.5 153 32.7
Cc04_g12480 Coffea canephora HOM05D000180 ORTHO05D000099 3.6e-07 59.3 150 31.3
Glyma.03G147800 Glycine max HOM05D000180 ORTHO05D000099 4.7e-07 58.9 155 28.4
TAR628G0454 Trochodendron aralioides HOM05D000180 ORTHO05D000099 4.7e-07 58.9 152 31.6
FAN14G5554 Fragaria x ananassa HOM05D000180 ORTHO05D000099 6.2e-07 58.5 88 36.4
Nn7g35942 Nelumbo nucifera HOM05D000180 ORTHO05D000099 6.2e-07 58.5 145 33.8
FvH4_6g42510 Fragaria vesca HOM05D000180 ORTHO05D000099 1.1e-06 57.8 88 36.4
TPR.G5231 Trifolium pratense HOM05D000180 ORTHO05D000099 1.8e-06 57.0 125 33.6
HPP92_003134 Vanilla planifolia HOM05D000180 ORTHO05D000099 1.8e-06 57.0 174 25.3
Haze_12837 Corylus avellana HOM05D000180 ORTHO05D000099 2.3e-06 56.6 102 35.3
FAN05G1781 Fragaria x ananassa HOM05D000180 ORTHO05D000099 2.3e-06 56.6 152 31.6
unitig_0.g2849 Utricularia gibba HOM05D003816 ORTHO05D004410 2.3e-06 56.6 114 32.5
VMungo1127G1606 Vigna mungo HOM05D000180 ORTHO05D000099 2.3e-06 56.6 155 32.3
Gohir.D04G158300 Gossypium hirsutum HOM05D000180 ORTHO05D000099 3.1e-06 56.2 150 31.3
Gorai.012G145700 Gossypium raimondii HOM05D000180 ORTHO05D000099 3.1e-06 56.2 150 31.3
Oeu001389.1 Olea europaea HOM05D000180 ORTHO05D000099 3.1e-06 56.2 126 33.3
PGSC0003DMG400032229 Solanum tuberosum HOM05D000180 ORTHO05D000099 3.1e-06 56.2 148 31.1
CiPaw.14G133500 Carya illinoinensis HOM05D000180 ORTHO05D000099 4.0e-06 55.8 156 28.8
Gohir.A09G213000 Gossypium hirsutum HOM05D000180 ORTHO05D000099 4.0e-06 55.8 162 30.2
Haze_22988 Corylus avellana HOM05D000180 ORTHO05D000099 5.2e-06 55.5 146 29.5
Duzib093G0842 Durio zibethinus HOM05D000180 ORTHO05D000099 5.2e-06 55.5 151 29.8
Eucgr.A02481 Eucalyptus grandis HOM05D000180 ORTHO05D000099 5.2e-06 55.5 101 36.6
Gohir.D09G206600 Gossypium hirsutum HOM05D000180 ORTHO05D000099 5.2e-06 55.5 162 30.2
Medtr4g013320 Medicago truncatula HOM05D000180 ORTHO05D000099 5.2e-06 55.5 144 32.6
Oeu060424.1 Olea europaea HOM05D000180 ORTHO05D000099 5.2e-06 55.5 145 35.2
Psat5g033680 Pisum sativum HOM05D000180 ORTHO05D000099 5.2e-06 55.5 168 33.3
Cfa009617 Carpinus fangiana HOM05D000180 ORTHO05D000099 6.8e-06 55.1 153 29.4
CiPaw.13G172200 Carya illinoinensis HOM05D000180 ORTHO05D000099 6.8e-06 55.1 139 32.4
Haze_12834 Corylus avellana HOM05D000180 ORTHO05D000099 6.8e-06 55.1 102 34.3
Gohir.A04G116600 Gossypium hirsutum HOM05D000180 ORTHO05D000099 6.8e-06 55.1 150 30.7
Nn7g35945 Nelumbo nucifera HOM05D000180 ORTHO05D000099 6.8e-06 55.1 154 31.2
Oeu001618.1 Olea europaea HOM05D000180 ORTHO05D000099 6.8e-06 55.1 138 34.1
TAR376G1129 Trochodendron aralioides HOM05D000180 ORTHO05D000099 6.8e-06 55.1 152 27.6
CANSAT64G2982 Cannabis sativa HOM05D000180 ORTHO05D000099 8.9e-06 54.7 122 35.2
Gohir.D03G085200 Gossypium hirsutum HOM05D000180 ORTHO05D000099 8.9e-06 54.7 159 30.8
Gorai.006G230500 Gossypium raimondii HOM05D000180 ORTHO05D000099 8.9e-06 54.7 162 30.2
Lsat_1_v5_gn_6_18101 Lactuca sativa HOM05D000180 ORTHO05D000099 8.9e-06 54.7 119 34.5
Medtr7g093790 Medicago truncatula HOM05D000180 ORTHO05D000099 8.9e-06 54.7 128 31.2


User provided reference genes

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